Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00695 and DDA3937_RS00700 are separated by 98 nucleotides DDA3937_RS00700 and DDA3937_RS00705 are separated by 445 nucleotides
DDA3937_RS00695: DDA3937_RS00695 - hypothetical protein, at 160,727 to 161,644
_RS00695
DDA3937_RS00700: DDA3937_RS00700 - MCP four helix bundle domain-containing protein, at 161,743 to 163,362
_RS00700
DDA3937_RS00705: DDA3937_RS00705 - MCP four helix bundle domain-containing protein, at 163,808 to 165,436
_RS00705
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.765 kb on + strand at 160.765 kb on + strand at 160.894 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.924 kb on + strand, within DDA3937_RS00695 at 160.925 kb on - strand, within DDA3937_RS00695 at 160.946 kb on - strand, within DDA3937_RS00695 at 161.049 kb on + strand, within DDA3937_RS00695 at 161.371 kb on + strand, within DDA3937_RS00695 at 161.527 kb on + strand, within DDA3937_RS00695 at 161.617 kb on + strand at 161.726 kb on - strand at 161.739 kb on + strand at 161.739 kb on + strand at 161.740 kb on - strand at 161.815 kb on + strand at 162.399 kb on + strand, within DDA3937_RS00700 at 162.678 kb on + strand, within DDA3937_RS00700 at 162.689 kb on + strand, within DDA3937_RS00700 at 162.689 kb on + strand, within DDA3937_RS00700 at 162.689 kb on + strand, within DDA3937_RS00700 at 162.689 kb on + strand, within DDA3937_RS00700 at 162.690 kb on - strand, within DDA3937_RS00700 at 162.690 kb on - strand, within DDA3937_RS00700 at 162.690 kb on - strand, within DDA3937_RS00700 at 162.757 kb on + strand, within DDA3937_RS00700 at 162.768 kb on + strand, within DDA3937_RS00700 at 162.800 kb on + strand, within DDA3937_RS00700 at 163.005 kb on + strand, within DDA3937_RS00700 at 163.066 kb on + strand, within DDA3937_RS00700 at 163.066 kb on + strand, within DDA3937_RS00700 at 163.066 kb on + strand, within DDA3937_RS00700 at 163.067 kb on - strand, within DDA3937_RS00700 at 163.067 kb on - strand, within DDA3937_RS00700 at 163.078 kb on - strand, within DDA3937_RS00700 at 163.185 kb on + strand, within DDA3937_RS00700 at 163.210 kb on - strand at 163.232 kb on + strand at 163.233 kb on - strand at 163.233 kb on - strand at 163.233 kb on - strand at 163.233 kb on - strand at 163.242 kb on + strand at 163.259 kb on - strand at 163.287 kb on + strand at 163.309 kb on + strand at 163.309 kb on + strand at 163.309 kb on + strand at 163.309 kb on + strand at 163.310 kb on - strand at 163.310 kb on - strand at 163.310 kb on - strand at 163.311 kb on + strand at 163.311 kb on + strand at 163.312 kb on - strand at 163.312 kb on - strand at 163.344 kb on + strand at 163.352 kb on - strand at 163.363 kb on + strand at 163.363 kb on + strand at 163.372 kb on + strand at 163.372 kb on + strand at 163.378 kb on - strand at 163.378 kb on - strand at 163.400 kb on - strand at 163.434 kb on + strand at 163.434 kb on + strand at 163.435 kb on - strand at 163.435 kb on - strand at 163.435 kb on - strand at 163.482 kb on - strand at 163.482 kb on - strand at 163.535 kb on + strand at 163.535 kb on + strand at 163.539 kb on + strand at 163.558 kb on - strand at 163.686 kb on + strand at 163.686 kb on + strand at 163.731 kb on + strand at 163.731 kb on + strand at 163.732 kb on - strand at 163.732 kb on - strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.736 kb on - strand at 163.744 kb on + strand at 163.792 kb on + strand at 163.793 kb on - strand at 163.795 kb on - strand at 163.810 kb on - strand at 163.810 kb on - strand at 163.832 kb on + strand at 164.113 kb on + strand, within DDA3937_RS00705 at 164.113 kb on + strand, within DDA3937_RS00705 at 164.113 kb on + strand, within DDA3937_RS00705 at 164.344 kb on + strand, within DDA3937_RS00705 at 164.345 kb on - strand, within DDA3937_RS00705
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 160,765 + -1.5 160,765 + -0.7 160,894 + DDA3937_RS00695 0.18 -0.9 160,924 + DDA3937_RS00695 0.21 -1.0 160,924 + DDA3937_RS00695 0.21 -0.5 160,924 + DDA3937_RS00695 0.21 +0.9 160,924 + DDA3937_RS00695 0.21 +0.8 160,925 - DDA3937_RS00695 0.22 -0.6 160,946 - DDA3937_RS00695 0.24 +0.3 161,049 + DDA3937_RS00695 0.35 +0.7 161,371 + DDA3937_RS00695 0.70 +0.1 161,527 + DDA3937_RS00695 0.87 +0.2 161,617 + -0.5 161,726 - -0.0 161,739 + +0.2 161,739 + +0.7 161,740 - -0.2 161,815 + -0.6 162,399 + DDA3937_RS00700 0.40 +0.8 162,678 + DDA3937_RS00700 0.58 -0.3 162,689 + DDA3937_RS00700 0.58 -0.1 162,689 + DDA3937_RS00700 0.58 +1.3 162,689 + DDA3937_RS00700 0.58 +0.7 162,689 + DDA3937_RS00700 0.58 -0.3 162,690 - DDA3937_RS00700 0.58 -0.3 162,690 - DDA3937_RS00700 0.58 +0.7 162,690 - DDA3937_RS00700 0.58 -1.1 162,757 + DDA3937_RS00700 0.63 +1.0 162,768 + DDA3937_RS00700 0.63 +0.3 162,800 + DDA3937_RS00700 0.65 -0.5 163,005 + DDA3937_RS00700 0.78 +0.6 163,066 + DDA3937_RS00700 0.82 +0.3 163,066 + DDA3937_RS00700 0.82 -0.4 163,066 + DDA3937_RS00700 0.82 -0.7 163,067 - DDA3937_RS00700 0.82 -0.7 163,067 - DDA3937_RS00700 0.82 +0.3 163,078 - DDA3937_RS00700 0.82 -0.0 163,185 + DDA3937_RS00700 0.89 +0.3 163,210 - +0.2 163,232 + +0.8 163,233 - +0.3 163,233 - -1.7 163,233 - -0.5 163,233 - -0.9 163,242 + -0.6 163,259 - -0.7 163,287 + -0.5 163,309 + +1.3 163,309 + +2.1 163,309 + -0.7 163,309 + -1.3 163,310 - -0.6 163,310 - -0.7 163,310 - -0.0 163,311 + -0.1 163,311 + +1.3 163,312 - -0.3 163,312 - -0.3 163,344 + -0.0 163,352 - -0.4 163,363 + +1.3 163,363 + +0.5 163,372 + -0.5 163,372 + -0.8 163,378 - +0.8 163,378 - -0.6 163,400 - -1.1 163,434 + +0.3 163,434 + -0.6 163,435 - +0.2 163,435 - -0.1 163,435 - -0.6 163,482 - +1.9 163,482 - -0.4 163,535 + -1.4 163,535 + -0.0 163,539 + +0.8 163,558 - +1.1 163,686 + +2.6 163,686 + -0.3 163,731 + -1.0 163,731 + +0.3 163,732 - +0.7 163,732 - -0.8 163,733 + +0.5 163,733 + -2.4 163,733 + +0.3 163,733 + +0.1 163,733 + -1.3 163,734 - -0.3 163,734 - -0.7 163,734 - -0.5 163,734 - +0.0 163,734 - -1.0 163,734 - +2.1 163,734 - -0.4 163,734 - +0.1 163,734 - +1.3 163,734 - -0.0 163,735 + -0.1 163,735 + -0.5 163,735 + -0.7 163,735 + +0.1 163,735 + -0.8 163,736 - +1.0 163,744 + -0.3 163,792 + -1.8 163,793 - -0.3 163,795 - +0.0 163,810 - +0.0 163,810 - +0.2 163,832 + -0.5 164,113 + DDA3937_RS00705 0.19 -1.6 164,113 + DDA3937_RS00705 0.19 +0.1 164,113 + DDA3937_RS00705 0.19 +2.7 164,344 + DDA3937_RS00705 0.33 -1.1 164,345 - DDA3937_RS00705 0.33 +0.4
Or see this region's nucleotide sequence