Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00615 and DDA3937_RS00620 are separated by 271 nucleotides DDA3937_RS00620 and DDA3937_RS00625 are separated by 60 nucleotides DDA3937_RS00625 and DDA3937_RS00630 overlap by 11 nucleotides DDA3937_RS00630 and DDA3937_RS00635 are separated by 311 nucleotides
DDA3937_RS00615: DDA3937_RS00615 - lysoplasmalogenase, at 144,435 to 145,064
_RS00615
DDA3937_RS00620: DDA3937_RS00620 - DUF1820 family protein, at 145,336 to 145,662
_RS00620
DDA3937_RS00625: DDA3937_RS00625 - DUF1145 family protein, at 145,723 to 146,004
_RS00625
DDA3937_RS00630: DDA3937_RS00630 - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 145,994 to 146,617
_RS00630
DDA3937_RS00635: DDA3937_RS00635 - signal recognition particle-docking protein FtsY, at 146,929 to 148,269
_RS00635
Position (kb)
145
146
147 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 144.794 kb on + strand, within DDA3937_RS00615 at 144.794 kb on + strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.795 kb on - strand, within DDA3937_RS00615 at 144.796 kb on + strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.797 kb on - strand, within DDA3937_RS00615 at 144.818 kb on - strand, within DDA3937_RS00615 at 144.818 kb on - strand, within DDA3937_RS00615 at 144.960 kb on + strand at 144.960 kb on + strand, within DDA3937_RS00615 at 144.961 kb on - strand, within DDA3937_RS00615 at 144.974 kb on + strand, within DDA3937_RS00615 at 144.974 kb on + strand, within DDA3937_RS00615 at 144.974 kb on + strand at 144.975 kb on - strand, within DDA3937_RS00615 at 144.975 kb on - strand, within DDA3937_RS00615 at 145.006 kb on + strand at 145.007 kb on - strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.021 kb on + strand at 145.022 kb on - strand at 145.022 kb on - strand at 145.022 kb on - strand at 145.022 kb on - strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.064 kb on + strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.065 kb on - strand at 145.076 kb on - strand at 145.132 kb on - strand at 145.139 kb on + strand at 145.140 kb on - strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.171 kb on + strand at 145.172 kb on - strand at 145.172 kb on - strand at 145.172 kb on - strand at 145.172 kb on - strand at 145.172 kb on - strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.175 kb on + strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.177 kb on + strand at 145.177 kb on + strand at 145.178 kb on - strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.266 kb on + strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.267 kb on - strand at 145.295 kb on + strand at 145.302 kb on - strand at 145.333 kb on + strand at 145.333 kb on + strand at 145.333 kb on + strand at 145.334 kb on - strand at 145.353 kb on - strand at 145.383 kb on + strand, within DDA3937_RS00620 at 145.390 kb on + strand, within DDA3937_RS00620 at 145.391 kb on - strand, within DDA3937_RS00620 at 145.391 kb on - strand, within DDA3937_RS00620 at 145.391 kb on - strand, within DDA3937_RS00620 at 145.391 kb on - strand at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.399 kb on + strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.400 kb on - strand, within DDA3937_RS00620 at 145.478 kb on + strand, within DDA3937_RS00620 at 145.479 kb on - strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.537 kb on + strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.538 kb on - strand, within DDA3937_RS00620 at 145.539 kb on + strand, within DDA3937_RS00620 at 145.539 kb on + strand, within DDA3937_RS00620 at 145.539 kb on + strand, within DDA3937_RS00620 at 145.540 kb on - strand, within DDA3937_RS00620 at 145.564 kb on - strand, within DDA3937_RS00620 at 145.564 kb on - strand, within DDA3937_RS00620 at 145.734 kb on + strand at 145.780 kb on + strand, within DDA3937_RS00625 at 145.801 kb on + strand, within DDA3937_RS00625 at 145.801 kb on + strand, within DDA3937_RS00625 at 145.801 kb on + strand, within DDA3937_RS00625 at 145.801 kb on + strand, within DDA3937_RS00625 at 145.802 kb on - strand, within DDA3937_RS00625 at 145.802 kb on - strand, within DDA3937_RS00625 at 145.802 kb on - strand, within DDA3937_RS00625 at 145.914 kb on + strand, within DDA3937_RS00625 at 145.914 kb on + strand, within DDA3937_RS00625 at 145.915 kb on - strand, within DDA3937_RS00625 at 145.915 kb on - strand, within DDA3937_RS00625 at 145.966 kb on + strand, within DDA3937_RS00625 at 146.047 kb on + strand at 146.049 kb on + strand at 146.049 kb on + strand at 146.050 kb on - strand at 146.050 kb on - strand at 146.050 kb on - strand at 146.144 kb on - strand at 146.145 kb on + strand, within DDA3937_RS00630 at 146.145 kb on + strand, within DDA3937_RS00630 at 146.145 kb on + strand at 146.145 kb on + strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.146 kb on - strand, within DDA3937_RS00630 at 146.248 kb on - strand at 146.499 kb on - strand, within DDA3937_RS00630 at 146.612 kb on + strand at 146.613 kb on - strand at 146.613 kb on - strand at 146.637 kb on + strand at 146.637 kb on + strand at 146.637 kb on + strand at 146.638 kb on - strand at 146.638 kb on - strand at 146.676 kb on + strand at 146.677 kb on - strand at 146.699 kb on + strand at 146.708 kb on + strand at 146.709 kb on - strand at 146.709 kb on - strand at 146.720 kb on + strand at 146.721 kb on - strand at 146.721 kb on - strand at 146.727 kb on - strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.762 kb on + strand at 146.763 kb on - strand at 146.763 kb on - strand at 146.763 kb on - strand at 146.763 kb on - strand at 146.763 kb on - strand at 146.774 kb on + strand at 146.775 kb on - strand at 146.775 kb on - strand at 146.775 kb on - strand at 146.775 kb on - strand at 146.775 kb on - strand at 146.857 kb on + strand at 146.888 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 144,794 + DDA3937_RS00615 0.57 +1.0 144,794 + DDA3937_RS00615 0.57 -0.6 144,795 - DDA3937_RS00615 0.57 +0.7 144,795 - DDA3937_RS00615 0.57 -0.6 144,795 - DDA3937_RS00615 0.57 +1.6 144,795 - DDA3937_RS00615 0.57 +1.4 144,795 - DDA3937_RS00615 0.57 -0.5 144,796 + DDA3937_RS00615 0.57 -0.7 144,797 - DDA3937_RS00615 0.57 -0.7 144,797 - DDA3937_RS00615 0.57 -0.9 144,797 - DDA3937_RS00615 0.57 +0.5 144,797 - DDA3937_RS00615 0.57 -0.4 144,797 - DDA3937_RS00615 0.57 +0.6 144,818 - DDA3937_RS00615 0.61 +0.3 144,818 - DDA3937_RS00615 0.61 -0.3 144,960 + +1.3 144,960 + DDA3937_RS00615 0.83 -0.3 144,961 - DDA3937_RS00615 0.83 -0.7 144,974 + DDA3937_RS00615 0.86 +0.6 144,974 + DDA3937_RS00615 0.86 +0.9 144,974 + +1.7 144,975 - DDA3937_RS00615 0.86 +1.1 144,975 - DDA3937_RS00615 0.86 -0.4 145,006 + -0.2 145,007 - -0.1 145,021 + +0.3 145,021 + +0.2 145,021 + +1.1 145,021 + -0.6 145,021 + -2.5 145,021 + -0.7 145,021 + -0.9 145,022 - -0.4 145,022 - +0.5 145,022 - +0.4 145,022 - -0.3 145,064 + -0.1 145,064 + -0.7 145,064 + +0.0 145,064 + -1.5 145,064 + -0.9 145,064 + +0.3 145,064 + +0.3 145,064 + -0.8 145,064 + -0.5 145,064 + -0.5 145,064 + -0.0 145,064 + -0.6 145,064 + +0.3 145,064 + -0.8 145,065 - +0.7 145,065 - -0.3 145,065 - -0.2 145,065 - +0.9 145,065 - +0.0 145,065 - +0.0 145,065 - -1.5 145,065 - +0.2 145,065 - -1.1 145,065 - -1.4 145,065 - +0.3 145,065 - -0.2 145,065 - +0.3 145,065 - -0.8 145,065 - +0.1 145,076 - -0.3 145,132 - -0.1 145,139 + -1.3 145,140 - -0.3 145,171 + +0.1 145,171 + +0.1 145,171 + -0.8 145,171 + +0.1 145,171 + -0.4 145,171 + -0.1 145,172 - +0.8 145,172 - -0.7 145,172 - -1.3 145,172 - -0.5 145,172 - +0.9 145,175 + -2.9 145,175 + +0.1 145,175 + +0.3 145,175 + -1.0 145,175 + -0.3 145,175 + -0.2 145,175 + +0.0 145,175 + -0.1 145,175 + -1.4 145,176 - -0.5 145,176 - -0.6 145,176 - +0.7 145,176 - -1.0 145,177 + -0.2 145,177 + -0.1 145,178 - -0.8 145,266 + -0.2 145,266 + +1.0 145,266 + -0.1 145,266 + -0.3 145,266 + +0.3 145,266 + -0.1 145,267 - -0.3 145,267 - -0.3 145,267 - +0.0 145,267 - +0.3 145,267 - -0.2 145,267 - +0.3 145,267 - -0.5 145,295 + -1.1 145,302 - +0.3 145,333 + -0.1 145,333 + +0.1 145,333 + -0.2 145,334 - +0.6 145,353 - +0.5 145,383 + DDA3937_RS00620 0.14 +0.4 145,390 + DDA3937_RS00620 0.17 +0.6 145,391 - DDA3937_RS00620 0.17 -0.2 145,391 - DDA3937_RS00620 0.17 +1.3 145,391 - DDA3937_RS00620 0.17 -0.1 145,391 - +1.3 145,399 + DDA3937_RS00620 0.19 -1.1 145,399 + DDA3937_RS00620 0.19 -1.0 145,399 + DDA3937_RS00620 0.19 -1.3 145,399 + DDA3937_RS00620 0.19 -0.6 145,399 + DDA3937_RS00620 0.19 -0.7 145,399 + DDA3937_RS00620 0.19 +0.1 145,399 + DDA3937_RS00620 0.19 -0.5 145,399 + DDA3937_RS00620 0.19 -1.0 145,399 + DDA3937_RS00620 0.19 -0.5 145,400 - DDA3937_RS00620 0.20 +0.7 145,400 - DDA3937_RS00620 0.20 -1.0 145,400 - DDA3937_RS00620 0.20 -0.9 145,400 - DDA3937_RS00620 0.20 +0.6 145,400 - DDA3937_RS00620 0.20 +0.1 145,400 - DDA3937_RS00620 0.20 -2.4 145,478 + DDA3937_RS00620 0.43 +0.6 145,479 - DDA3937_RS00620 0.44 +1.1 145,537 + DDA3937_RS00620 0.61 -0.1 145,537 + DDA3937_RS00620 0.61 +0.6 145,537 + DDA3937_RS00620 0.61 -0.6 145,537 + DDA3937_RS00620 0.61 -0.8 145,537 + DDA3937_RS00620 0.61 -0.2 145,537 + DDA3937_RS00620 0.61 +1.1 145,537 + DDA3937_RS00620 0.61 -0.3 145,538 - DDA3937_RS00620 0.62 +0.5 145,538 - DDA3937_RS00620 0.62 +0.1 145,538 - DDA3937_RS00620 0.62 +0.7 145,538 - DDA3937_RS00620 0.62 +0.5 145,538 - DDA3937_RS00620 0.62 -0.7 145,538 - DDA3937_RS00620 0.62 +0.0 145,539 + DDA3937_RS00620 0.62 +0.3 145,539 + DDA3937_RS00620 0.62 +2.3 145,539 + DDA3937_RS00620 0.62 -1.2 145,540 - DDA3937_RS00620 0.62 -0.3 145,564 - DDA3937_RS00620 0.70 -0.6 145,564 - DDA3937_RS00620 0.70 -0.3 145,734 + -1.2 145,780 + DDA3937_RS00625 0.20 -1.0 145,801 + DDA3937_RS00625 0.28 -1.5 145,801 + DDA3937_RS00625 0.28 -0.8 145,801 + DDA3937_RS00625 0.28 -2.1 145,801 + DDA3937_RS00625 0.28 +0.2 145,802 - DDA3937_RS00625 0.28 -3.0 145,802 - DDA3937_RS00625 0.28 -1.1 145,802 - DDA3937_RS00625 0.28 +0.8 145,914 + DDA3937_RS00625 0.68 -1.3 145,914 + DDA3937_RS00625 0.68 +1.0 145,915 - DDA3937_RS00625 0.68 -0.7 145,915 - DDA3937_RS00625 0.68 -1.0 145,966 + DDA3937_RS00625 0.86 -0.1 146,047 + -0.1 146,049 + -0.7 146,049 + -0.6 146,050 - -0.5 146,050 - -0.0 146,050 - +0.0 146,144 - -0.7 146,145 + DDA3937_RS00630 0.24 -0.3 146,145 + DDA3937_RS00630 0.24 -0.7 146,145 + +0.7 146,145 + DDA3937_RS00630 0.24 +0.0 146,146 - DDA3937_RS00630 0.24 +0.9 146,146 - DDA3937_RS00630 0.24 +1.7 146,146 - DDA3937_RS00630 0.24 -0.5 146,146 - DDA3937_RS00630 0.24 -0.5 146,146 - DDA3937_RS00630 0.24 -1.0 146,248 - -0.3 146,499 - DDA3937_RS00630 0.81 +1.0 146,612 + -0.8 146,613 - -0.2 146,613 - +0.2 146,637 + -0.3 146,637 + +0.1 146,637 + -1.0 146,638 - -0.1 146,638 - +0.6 146,676 + -0.5 146,677 - -0.9 146,699 + +0.2 146,708 + -1.8 146,709 - -0.9 146,709 - +0.3 146,720 + -0.5 146,721 - -0.9 146,721 - +0.1 146,727 - -0.3 146,762 + -0.4 146,762 + +0.0 146,762 + -1.5 146,762 + +0.3 146,762 + -0.6 146,762 + -0.8 146,762 + -0.8 146,762 + -0.9 146,763 - -0.1 146,763 - +0.9 146,763 - -0.9 146,763 - +1.3 146,763 - -0.5 146,774 + -0.6 146,775 - +0.7 146,775 - -0.7 146,775 - +0.1 146,775 - +3.3 146,775 - -0.9 146,857 + -0.7 146,888 + -0.1
Or see this region's nucleotide sequence