Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00295

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00285 and DDA3937_RS00290 are separated by 178 nucleotidesDDA3937_RS00290 and DDA3937_RS00295 are separated by 444 nucleotidesDDA3937_RS00295 and DDA3937_RS00300 are separated by 100 nucleotides DDA3937_RS00285: DDA3937_RS00285 - hypothetical protein, at 67,850 to 68,131 _RS00285 DDA3937_RS00290: DDA3937_RS00290 - DUF1471 domain-containing protein, at 68,310 to 68,576 _RS00290 DDA3937_RS00295: DDA3937_RS00295 - ROK family transcriptional regulator, at 69,021 to 70,124 _RS00295 DDA3937_RS00300: DDA3937_RS00300 - extracellular solute-binding protein, at 70,225 to 71,595 _RS00300 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.259 kb on + strandat 68.401 kb on + strand, within DDA3937_RS00290at 68.401 kb on + strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.568 kb on + strandat 68.568 kb on + strandat 68.568 kb on + strandat 68.569 kb on - strandat 68.569 kb on - strandat 68.569 kb on - strandat 68.569 kb on - strandat 68.569 kb on - strandat 68.608 kb on + strandat 68.609 kb on - strandat 68.614 kb on + strandat 68.672 kb on - strandat 68.702 kb on + strandat 68.702 kb on + strandat 68.702 kb on + strandat 68.972 kb on + strandat 68.972 kb on + strandat 68.972 kb on + strandat 68.972 kb on + strandat 68.972 kb on + strandat 69.199 kb on + strand, within DDA3937_RS00295at 69.233 kb on + strand, within DDA3937_RS00295at 69.233 kb on + strand, within DDA3937_RS00295at 69.234 kb on - strand, within DDA3937_RS00295at 69.234 kb on - strand, within DDA3937_RS00295at 69.234 kb on - strand, within DDA3937_RS00295at 69.234 kb on - strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.236 kb on - strand, within DDA3937_RS00295at 69.236 kb on - strand, within DDA3937_RS00295at 69.236 kb on - strand, within DDA3937_RS00295at 69.236 kb on - strand, within DDA3937_RS00295at 69.247 kb on + strand, within DDA3937_RS00295at 69.248 kb on - strand, within DDA3937_RS00295at 69.494 kb on + strand, within DDA3937_RS00295at 69.495 kb on - strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.503 kb on - strand, within DDA3937_RS00295at 69.624 kb on + strand, within DDA3937_RS00295at 69.624 kb on + strand, within DDA3937_RS00295at 69.624 kb on + strand, within DDA3937_RS00295at 69.624 kb on + strandat 69.624 kb on + strand, within DDA3937_RS00295at 69.841 kb on + strand, within DDA3937_RS00295at 69.841 kb on + strand, within DDA3937_RS00295at 69.841 kb on + strand, within DDA3937_RS00295at 69.841 kb on + strand, within DDA3937_RS00295at 69.895 kb on + strand, within DDA3937_RS00295at 69.895 kb on + strand, within DDA3937_RS00295at 69.895 kb on + strand, within DDA3937_RS00295at 69.895 kb on + strand, within DDA3937_RS00295at 69.896 kb on - strand, within DDA3937_RS00295at 69.978 kb on + strand, within DDA3937_RS00295at 69.978 kb on + strand, within DDA3937_RS00295at 69.978 kb on + strand, within DDA3937_RS00295at 69.979 kb on - strand, within DDA3937_RS00295at 69.979 kb on - strand, within DDA3937_RS00295at 70.180 kb on - strandat 70.185 kb on - strandat 70.185 kb on - strandat 70.189 kb on - strandat 70.189 kb on - strandat 70.209 kb on + strandat 70.209 kb on + strandat 70.259 kb on + strandat 70.332 kb on + strandat 70.332 kb on + strandat 70.332 kb on + strandat 70.332 kb on + strandat 70.561 kb on + strand, within DDA3937_RS00300at 70.587 kb on + strand, within DDA3937_RS00300at 70.606 kb on + strand, within DDA3937_RS00300at 70.606 kb on + strand, within DDA3937_RS00300at 70.607 kb on - strand, within DDA3937_RS00300at 70.607 kb on - strand, within DDA3937_RS00300at 70.645 kb on + strand, within DDA3937_RS00300at 70.645 kb on + strand, within DDA3937_RS00300at 70.660 kb on + strand, within DDA3937_RS00300at 70.660 kb on + strand, within DDA3937_RS00300at 70.660 kb on + strand, within DDA3937_RS00300at 70.744 kb on - strand, within DDA3937_RS00300at 70.820 kb on + strand, within DDA3937_RS00300at 70.820 kb on + strand, within DDA3937_RS00300at 70.821 kb on - strand, within DDA3937_RS00300at 70.821 kb on - strand, within DDA3937_RS00300at 70.876 kb on + strand, within DDA3937_RS00300

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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68,053 + DDA3937_RS00285 0.72 -0.8
68,053 + DDA3937_RS00285 0.72 +0.3
68,053 + DDA3937_RS00285 0.72 -0.6
68,053 + DDA3937_RS00285 0.72 -0.8
68,053 + DDA3937_RS00285 0.72 -0.6
68,053 + DDA3937_RS00285 0.72 -0.8
68,053 + DDA3937_RS00285 0.72 +0.3
68,053 + DDA3937_RS00285 0.72 -1.8
68,054 - DDA3937_RS00285 0.72 -0.6
68,054 - DDA3937_RS00285 0.72 +0.1
68,054 - DDA3937_RS00285 0.72 +0.7
68,054 - DDA3937_RS00285 0.72 -0.3
68,054 - DDA3937_RS00285 0.72 -0.9
68,054 - DDA3937_RS00285 0.72 -1.0
68,259 + +0.5
68,401 + DDA3937_RS00290 0.34 -1.3
68,401 + DDA3937_RS00290 0.34 -0.5
68,402 - DDA3937_RS00290 0.34 -0.4
68,402 - DDA3937_RS00290 0.34 -1.1
68,402 - DDA3937_RS00290 0.34 -0.1
68,402 - DDA3937_RS00290 0.34 +0.3
68,568 + -0.0
68,568 + +0.4
68,568 + -0.3
68,569 - +0.8
68,569 - -1.3
68,569 - -0.5
68,569 - -1.4
68,569 - +0.3
68,608 + -0.2
68,609 - -0.5
68,614 + -0.6
68,672 - -0.3
68,702 + -0.5
68,702 + -1.7
68,702 + +0.6
68,972 + -0.4
68,972 + -0.3
68,972 + +0.1
68,972 + +0.2
68,972 + -1.3
69,199 + DDA3937_RS00295 0.16 +0.1
69,233 + DDA3937_RS00295 0.19 +0.9
69,233 + DDA3937_RS00295 0.19 -0.9
69,234 - DDA3937_RS00295 0.19 -0.1
69,234 - DDA3937_RS00295 0.19 -0.8
69,234 - DDA3937_RS00295 0.19 -0.5
69,234 - DDA3937_RS00295 0.19 -0.3
69,235 + DDA3937_RS00295 0.19 -1.1
69,235 + DDA3937_RS00295 0.19 +2.1
69,235 + DDA3937_RS00295 0.19 +0.7
69,235 + DDA3937_RS00295 0.19 +0.8
69,235 + DDA3937_RS00295 0.19 +0.2
69,235 + DDA3937_RS00295 0.19 +0.2
69,235 + DDA3937_RS00295 0.19 -1.2
69,235 + DDA3937_RS00295 0.19 -0.1
69,235 + DDA3937_RS00295 0.19 -1.6
69,235 + DDA3937_RS00295 0.19 +0.7
69,235 + DDA3937_RS00295 0.19 -0.5
69,236 - DDA3937_RS00295 0.19 -0.1
69,236 - DDA3937_RS00295 0.19 +0.6
69,236 - DDA3937_RS00295 0.19 +0.0
69,236 - DDA3937_RS00295 0.19 +0.2
69,247 + DDA3937_RS00295 0.20 -2.4
69,248 - DDA3937_RS00295 0.21 -0.0
69,494 + DDA3937_RS00295 0.43 -2.2
69,495 - DDA3937_RS00295 0.43 -0.9
69,496 + DDA3937_RS00295 0.43 -1.5
69,496 + DDA3937_RS00295 0.43 -0.4
69,496 + DDA3937_RS00295 0.43 +0.5
69,496 + DDA3937_RS00295 0.43 -1.0
69,496 + DDA3937_RS00295 0.43 -1.2
69,497 - DDA3937_RS00295 0.43 +1.6
69,497 - DDA3937_RS00295 0.43 -1.7
69,497 - DDA3937_RS00295 0.43 -0.8
69,497 - DDA3937_RS00295 0.43 -0.6
69,497 - DDA3937_RS00295 0.43 -0.5
69,497 - DDA3937_RS00295 0.43 +0.2
69,497 - DDA3937_RS00295 0.43 -0.3
69,497 - DDA3937_RS00295 0.43 -1.0
69,497 - DDA3937_RS00295 0.43 -0.7
69,497 - DDA3937_RS00295 0.43 -0.1
69,503 - DDA3937_RS00295 0.44 -0.8
69,624 + DDA3937_RS00295 0.55 -0.4
69,624 + DDA3937_RS00295 0.55 -2.7
69,624 + DDA3937_RS00295 0.55 -0.4
69,624 + -1.0
69,624 + DDA3937_RS00295 0.55 +0.1
69,841 + DDA3937_RS00295 0.74 +0.7
69,841 + DDA3937_RS00295 0.74 +0.3
69,841 + DDA3937_RS00295 0.74 -0.8
69,841 + DDA3937_RS00295 0.74 -0.4
69,895 + DDA3937_RS00295 0.79 +1.2
69,895 + DDA3937_RS00295 0.79 +0.8
69,895 + DDA3937_RS00295 0.79 -1.6
69,895 + DDA3937_RS00295 0.79 -0.8
69,896 - DDA3937_RS00295 0.79 -0.7
69,978 + DDA3937_RS00295 0.87 -0.4
69,978 + DDA3937_RS00295 0.87 -0.1
69,978 + DDA3937_RS00295 0.87 +0.3
69,979 - DDA3937_RS00295 0.87 -0.8
69,979 - DDA3937_RS00295 0.87 -1.8
70,180 - +0.0
70,185 - -0.5
70,185 - -0.5
70,189 - -0.6
70,189 - -0.0
70,209 + +0.5
70,209 + -0.9
70,259 + +0.8
70,332 + -0.1
70,332 + -0.7
70,332 + +0.3
70,332 + +0.0
70,561 + DDA3937_RS00300 0.25 -0.7
70,587 + DDA3937_RS00300 0.26 -0.9
70,606 + DDA3937_RS00300 0.28 +1.2
70,606 + DDA3937_RS00300 0.28 -0.4
70,607 - DDA3937_RS00300 0.28 +0.0
70,607 - DDA3937_RS00300 0.28 -2.1
70,645 + DDA3937_RS00300 0.31 -1.8
70,645 + DDA3937_RS00300 0.31 +2.6
70,660 + DDA3937_RS00300 0.32 -0.3
70,660 + DDA3937_RS00300 0.32 -1.0
70,660 + DDA3937_RS00300 0.32 -0.5
70,744 - DDA3937_RS00300 0.38 +0.6
70,820 + DDA3937_RS00300 0.43 +1.9
70,820 + DDA3937_RS00300 0.43 +0.5
70,821 - DDA3937_RS00300 0.43 -1.3
70,821 - DDA3937_RS00300 0.43 +0.0
70,876 + DDA3937_RS00300 0.47 -0.8

Or see this region's nucleotide sequence