Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00280 and DDA3937_RS00285 are separated by 376 nucleotides DDA3937_RS00285 and DDA3937_RS00290 are separated by 178 nucleotides DDA3937_RS00290 and DDA3937_RS00295 are separated by 444 nucleotides
DDA3937_RS00280: DDA3937_RS00280 - D-serine ammonia-lyase, at 66,100 to 67,473
_RS00280
DDA3937_RS00285: DDA3937_RS00285 - hypothetical protein, at 67,850 to 68,131
_RS00285
DDA3937_RS00290: DDA3937_RS00290 - DUF1471 domain-containing protein, at 68,310 to 68,576
_RS00290
DDA3937_RS00295: DDA3937_RS00295 - ROK family transcriptional regulator, at 69,021 to 70,124
_RS00295
Position (kb) 67
68
69 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.080 kb on - strand, within DDA3937_RS00280 at 67.080 kb on - strand, within DDA3937_RS00280 at 67.080 kb on - strand, within DDA3937_RS00280 at 67.091 kb on + strand, within DDA3937_RS00280 at 67.092 kb on - strand, within DDA3937_RS00280 at 67.150 kb on + strand, within DDA3937_RS00280 at 67.150 kb on + strand, within DDA3937_RS00280 at 67.150 kb on + strand, within DDA3937_RS00280 at 67.151 kb on - strand, within DDA3937_RS00280 at 67.151 kb on - strand, within DDA3937_RS00280 at 67.452 kb on + strand at 67.452 kb on + strand at 67.453 kb on - strand at 67.457 kb on + strand at 67.458 kb on - strand at 67.458 kb on - strand at 67.459 kb on + strand at 67.460 kb on - strand at 67.475 kb on - strand at 67.526 kb on + strand at 67.609 kb on - strand at 67.614 kb on + strand at 67.633 kb on + strand at 67.692 kb on + strand at 67.719 kb on - strand at 67.775 kb on + strand at 67.775 kb on + strand at 67.775 kb on + strand at 67.776 kb on - strand at 67.776 kb on - strand at 67.776 kb on - strand at 67.820 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.857 kb on + strand at 67.857 kb on + strand at 67.857 kb on + strand at 67.857 kb on + strand at 67.912 kb on + strand, within DDA3937_RS00285 at 67.913 kb on - strand, within DDA3937_RS00285 at 67.992 kb on - strand, within DDA3937_RS00285 at 67.992 kb on - strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.259 kb on + strand at 68.401 kb on + strand, within DDA3937_RS00290 at 68.401 kb on + strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.568 kb on + strand at 68.568 kb on + strand at 68.568 kb on + strand at 68.569 kb on - strand at 68.569 kb on - strand at 68.569 kb on - strand at 68.569 kb on - strand at 68.569 kb on - strand at 68.608 kb on + strand at 68.609 kb on - strand at 68.614 kb on + strand at 68.672 kb on - strand at 68.702 kb on + strand at 68.702 kb on + strand at 68.702 kb on + strand at 68.972 kb on + strand at 68.972 kb on + strand at 68.972 kb on + strand at 68.972 kb on + strand at 68.972 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 67,080 - DDA3937_RS00280 0.71 -0.4 67,080 - DDA3937_RS00280 0.71 +0.1 67,080 - DDA3937_RS00280 0.71 -0.3 67,091 + DDA3937_RS00280 0.72 -0.1 67,092 - DDA3937_RS00280 0.72 +0.0 67,150 + DDA3937_RS00280 0.76 -0.1 67,150 + DDA3937_RS00280 0.76 +0.4 67,150 + DDA3937_RS00280 0.76 -0.1 67,151 - DDA3937_RS00280 0.76 +0.3 67,151 - DDA3937_RS00280 0.76 +0.6 67,452 + +1.7 67,452 + +0.1 67,453 - -0.0 67,457 + +0.3 67,458 - -1.0 67,458 - -1.0 67,459 + +0.0 67,460 - +0.0 67,475 - -1.9 67,526 + -0.5 67,609 - -1.3 67,614 + -0.3 67,633 + -0.4 67,692 + +0.0 67,719 - +0.1 67,775 + -0.3 67,775 + -1.1 67,775 + +1.0 67,776 - -0.1 67,776 - +0.3 67,776 - +1.2 67,820 + +2.6 67,845 + +0.6 67,845 + -0.5 67,845 + -0.2 67,845 + +0.5 67,845 + -0.5 67,846 - +0.2 67,846 - -0.8 67,846 - -0.1 67,846 - -0.7 67,846 - -0.4 67,846 - +1.6 67,857 + -0.1 67,857 + +0.3 67,857 + -0.1 67,857 + -0.1 67,912 + DDA3937_RS00285 0.22 -1.7 67,913 - DDA3937_RS00285 0.22 +0.1 67,992 - DDA3937_RS00285 0.50 +0.0 67,992 - DDA3937_RS00285 0.50 -0.4 68,053 + DDA3937_RS00285 0.72 -0.8 68,053 + DDA3937_RS00285 0.72 +0.3 68,053 + DDA3937_RS00285 0.72 -0.6 68,053 + DDA3937_RS00285 0.72 -0.8 68,053 + DDA3937_RS00285 0.72 -0.6 68,053 + DDA3937_RS00285 0.72 -0.8 68,053 + DDA3937_RS00285 0.72 +0.3 68,053 + DDA3937_RS00285 0.72 -1.8 68,054 - DDA3937_RS00285 0.72 -0.6 68,054 - DDA3937_RS00285 0.72 +0.1 68,054 - DDA3937_RS00285 0.72 +0.7 68,054 - DDA3937_RS00285 0.72 -0.3 68,054 - DDA3937_RS00285 0.72 -0.9 68,054 - DDA3937_RS00285 0.72 -1.0 68,259 + +0.5 68,401 + DDA3937_RS00290 0.34 -1.3 68,401 + DDA3937_RS00290 0.34 -0.5 68,402 - DDA3937_RS00290 0.34 -0.4 68,402 - DDA3937_RS00290 0.34 -1.1 68,402 - DDA3937_RS00290 0.34 -0.1 68,402 - DDA3937_RS00290 0.34 +0.3 68,568 + -0.0 68,568 + +0.4 68,568 + -0.3 68,569 - +0.8 68,569 - -1.3 68,569 - -0.5 68,569 - -1.4 68,569 - +0.3 68,608 + -0.2 68,609 - -0.5 68,614 + -0.6 68,672 - -0.3 68,702 + -0.5 68,702 + -1.7 68,702 + +0.6 68,972 + -0.4 68,972 + -0.3 68,972 + +0.1 68,972 + +0.2 68,972 + -1.3
Or see this region's nucleotide sequence