Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00165 and DDA3937_RS00170 are separated by 181 nucleotides DDA3937_RS00170 and DDA3937_RS00175 overlap by 1 nucleotides DDA3937_RS00175 and DDA3937_RS00180 are separated by 6 nucleotides
DDA3937_RS00165: DDA3937_RS00165 - uracil-xanthine permease, at 38,891 to 40,279
_RS00165
DDA3937_RS00170: DDA3937_RS00170 - ATP-dependent DNA helicase RecG, at 40,461 to 42,542
_RS00170
DDA3937_RS00175: DDA3937_RS00175 - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 42,542 to 43,234
_RS00175
DDA3937_RS00180: DDA3937_RS00180 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 43,241 to 45,343
_RS00180
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.499 kb on - strand, within DDA3937_RS00165 at 39.502 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165 at 39.785 kb on - strand, within DDA3937_RS00165 at 39.909 kb on - strand, within DDA3937_RS00165 at 40.212 kb on + strand at 40.282 kb on + strand at 40.318 kb on - strand at 40.378 kb on - strand at 40.399 kb on - strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.402 kb on + strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.403 kb on - strand at 40.411 kb on - strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.472 kb on + strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.473 kb on - strand at 40.482 kb on - strand at 40.482 kb on - strand at 40.482 kb on - strand at 40.750 kb on + strand, within DDA3937_RS00170 at 40.750 kb on + strand, within DDA3937_RS00170 at 40.751 kb on - strand, within DDA3937_RS00170 at 40.892 kb on + strand, within DDA3937_RS00170 at 40.892 kb on + strand, within DDA3937_RS00170 at 40.892 kb on + strand, within DDA3937_RS00170 at 41.083 kb on + strand, within DDA3937_RS00170 at 41.084 kb on - strand, within DDA3937_RS00170 at 41.084 kb on - strand, within DDA3937_RS00170 at 41.169 kb on - strand, within DDA3937_RS00170 at 41.224 kb on + strand, within DDA3937_RS00170 at 41.224 kb on + strand, within DDA3937_RS00170 at 41.225 kb on - strand, within DDA3937_RS00170 at 41.225 kb on - strand, within DDA3937_RS00170 at 41.427 kb on + strand, within DDA3937_RS00170 at 41.427 kb on + strand, within DDA3937_RS00170 at 41.428 kb on - strand, within DDA3937_RS00170 at 41.649 kb on + strand at 41.649 kb on + strand, within DDA3937_RS00170 at 41.649 kb on + strand, within DDA3937_RS00170 at 41.649 kb on + strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.650 kb on - strand, within DDA3937_RS00170 at 41.693 kb on + strand, within DDA3937_RS00170 at 41.693 kb on + strand, within DDA3937_RS00170 at 42.050 kb on + strand, within DDA3937_RS00170 at 42.050 kb on + strand, within DDA3937_RS00170 at 42.051 kb on - strand, within DDA3937_RS00170 at 42.051 kb on - strand, within DDA3937_RS00170 at 42.088 kb on + strand at 42.088 kb on + strand, within DDA3937_RS00170 at 42.186 kb on + strand, within DDA3937_RS00170 at 42.186 kb on + strand, within DDA3937_RS00170 at 42.187 kb on - strand, within DDA3937_RS00170 at 42.196 kb on + strand, within DDA3937_RS00170 at 42.196 kb on + strand, within DDA3937_RS00170 at 42.197 kb on - strand, within DDA3937_RS00170 at 42.197 kb on - strand, within DDA3937_RS00170 at 42.197 kb on - strand, within DDA3937_RS00170 at 42.251 kb on + strand, within DDA3937_RS00170 at 42.261 kb on + strand at 42.262 kb on - strand, within DDA3937_RS00170 at 42.273 kb on - strand, within DDA3937_RS00170 at 42.351 kb on + strand at 42.352 kb on - strand at 42.352 kb on - strand at 42.352 kb on - strand at 42.352 kb on - strand at 42.361 kb on + strand at 42.361 kb on + strand at 42.361 kb on + strand at 42.361 kb on + strand at 42.362 kb on - strand at 42.362 kb on - strand at 42.362 kb on - strand at 42.391 kb on + strand at 42.392 kb on - strand at 42.543 kb on + strand at 42.544 kb on - strand at 42.723 kb on + strand, within DDA3937_RS00175 at 42.723 kb on + strand, within DDA3937_RS00175 at 42.723 kb on + strand, within DDA3937_RS00175 at 42.723 kb on + strand, within DDA3937_RS00175 at 42.724 kb on - strand, within DDA3937_RS00175 at 42.895 kb on + strand, within DDA3937_RS00175 at 42.896 kb on - strand, within DDA3937_RS00175 at 42.896 kb on - strand, within DDA3937_RS00175 at 42.906 kb on + strand, within DDA3937_RS00175 at 42.907 kb on - strand, within DDA3937_RS00175 at 42.907 kb on - strand, within DDA3937_RS00175 at 43.136 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.150 kb on + strand, within DDA3937_RS00175 at 43.151 kb on - strand, within DDA3937_RS00175 at 43.151 kb on - strand, within DDA3937_RS00175 at 43.196 kb on - strand at 43.210 kb on + strand at 43.216 kb on + strand at 43.216 kb on + strand at 43.216 kb on + strand at 43.216 kb on + strand at 43.216 kb on + strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.218 kb on + strand at 43.219 kb on - strand at 43.234 kb on + strand at 43.235 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 39,498 + DDA3937_RS00165 0.44 -1.3 39,498 + DDA3937_RS00165 0.44 -1.2 39,499 - DDA3937_RS00165 0.44 +0.8 39,502 - DDA3937_RS00165 0.44 -0.8 39,618 - DDA3937_RS00165 0.52 -0.3 39,618 - DDA3937_RS00165 0.52 +0.2 39,785 - DDA3937_RS00165 0.64 -1.8 39,909 - DDA3937_RS00165 0.73 -1.3 40,212 + +0.3 40,282 + +0.1 40,318 - -0.6 40,378 - +1.2 40,399 - +0.2 40,402 + -1.3 40,402 + +0.3 40,402 + -0.4 40,402 + -0.5 40,402 + +1.7 40,402 + +0.7 40,403 - -0.2 40,403 - +0.5 40,403 - +0.9 40,403 - -0.8 40,403 - -1.0 40,403 - +0.5 40,403 - -0.0 40,411 - -0.3 40,472 + +0.4 40,472 + -0.2 40,472 + -0.4 40,472 + +0.1 40,472 + -1.1 40,472 + -0.0 40,473 - +0.2 40,473 - -0.1 40,473 - -0.7 40,473 - -1.3 40,473 - +0.7 40,482 - +0.2 40,482 - -0.3 40,482 - -0.5 40,750 + DDA3937_RS00170 0.14 -1.7 40,750 + DDA3937_RS00170 0.14 -0.7 40,751 - DDA3937_RS00170 0.14 -0.1 40,892 + DDA3937_RS00170 0.21 -0.3 40,892 + DDA3937_RS00170 0.21 -1.7 40,892 + DDA3937_RS00170 0.21 -0.4 41,083 + DDA3937_RS00170 0.30 -1.5 41,084 - DDA3937_RS00170 0.30 -0.7 41,084 - DDA3937_RS00170 0.30 -0.7 41,169 - DDA3937_RS00170 0.34 -0.9 41,224 + DDA3937_RS00170 0.37 -2.0 41,224 + DDA3937_RS00170 0.37 +0.7 41,225 - DDA3937_RS00170 0.37 -0.4 41,225 - DDA3937_RS00170 0.37 -0.5 41,427 + DDA3937_RS00170 0.46 +0.7 41,427 + DDA3937_RS00170 0.46 -1.5 41,428 - DDA3937_RS00170 0.46 -1.3 41,649 + -0.3 41,649 + DDA3937_RS00170 0.57 -2.0 41,649 + DDA3937_RS00170 0.57 -0.3 41,649 + DDA3937_RS00170 0.57 -2.6 41,650 - DDA3937_RS00170 0.57 -0.4 41,650 - DDA3937_RS00170 0.57 +0.5 41,650 - DDA3937_RS00170 0.57 -1.1 41,650 - DDA3937_RS00170 0.57 -0.7 41,650 - DDA3937_RS00170 0.57 -1.3 41,650 - DDA3937_RS00170 0.57 -1.3 41,693 + DDA3937_RS00170 0.59 +0.6 41,693 + DDA3937_RS00170 0.59 -3.3 42,050 + DDA3937_RS00170 0.76 -0.5 42,050 + DDA3937_RS00170 0.76 -0.3 42,051 - DDA3937_RS00170 0.76 -0.6 42,051 - DDA3937_RS00170 0.76 -0.3 42,088 + +1.3 42,088 + DDA3937_RS00170 0.78 +0.2 42,186 + DDA3937_RS00170 0.83 +0.0 42,186 + DDA3937_RS00170 0.83 +0.3 42,187 - DDA3937_RS00170 0.83 -0.8 42,196 + DDA3937_RS00170 0.83 -2.0 42,196 + DDA3937_RS00170 0.83 +0.0 42,197 - DDA3937_RS00170 0.83 -1.0 42,197 - DDA3937_RS00170 0.83 +0.4 42,197 - DDA3937_RS00170 0.83 -0.7 42,251 + DDA3937_RS00170 0.86 -1.0 42,261 + +1.3 42,262 - DDA3937_RS00170 0.87 -0.4 42,273 - DDA3937_RS00170 0.87 -1.4 42,351 + +0.8 42,352 - +0.6 42,352 - +0.2 42,352 - -0.7 42,352 - -0.7 42,361 + -0.9 42,361 + -0.9 42,361 + +0.9 42,361 + +0.3 42,362 - -1.3 42,362 - +0.2 42,362 - -0.5 42,391 + -1.5 42,392 - -0.5 42,543 + +2.1 42,544 - -0.1 42,723 + DDA3937_RS00175 0.26 -2.1 42,723 + DDA3937_RS00175 0.26 -0.4 42,723 + DDA3937_RS00175 0.26 +0.9 42,723 + DDA3937_RS00175 0.26 -0.5 42,724 - DDA3937_RS00175 0.26 +0.2 42,895 + DDA3937_RS00175 0.51 -0.4 42,896 - DDA3937_RS00175 0.51 +0.1 42,896 - DDA3937_RS00175 0.51 +0.9 42,906 + DDA3937_RS00175 0.53 -1.0 42,907 - DDA3937_RS00175 0.53 -0.1 42,907 - DDA3937_RS00175 0.53 -0.6 43,136 + DDA3937_RS00175 0.86 -0.8 43,150 + DDA3937_RS00175 0.88 -1.3 43,150 + DDA3937_RS00175 0.88 -0.9 43,150 + DDA3937_RS00175 0.88 -1.5 43,150 + DDA3937_RS00175 0.88 -0.0 43,150 + DDA3937_RS00175 0.88 -0.1 43,151 - DDA3937_RS00175 0.88 -0.8 43,151 - DDA3937_RS00175 0.88 -0.4 43,196 - -0.1 43,210 + +0.3 43,216 + +1.3 43,216 + -0.5 43,216 + -0.5 43,216 + -0.5 43,216 + -1.0 43,217 - -0.4 43,217 - -0.6 43,217 - -1.0 43,217 - -0.5 43,217 - -0.1 43,217 - -1.3 43,218 + -1.0 43,219 - -1.5 43,234 + -0.3 43,235 - -1.1
Or see this region's nucleotide sequence