Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00050

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
9,651	+				-0.4
9,651	+				-0.8
9,651	+				-0.3
9,651	+				+0.3
9,652	-				-0.1
9,652	-				+0.0
9,652	-				+0.5
9,712	-				+0.0
9,799	+		DDA3937_RS00045	0.19	-0.0
9,799	+		DDA3937_RS00045	0.19	-0.1
9,799	+		DDA3937_RS00045	0.19	-0.5
9,800	-		DDA3937_RS00045	0.19	-0.5
9,828	+		DDA3937_RS00045	0.22	-1.1
9,838	-		DDA3937_RS00045	0.23	-0.1
9,917	+		DDA3937_RS00045	0.32	+0.3
9,918	-		DDA3937_RS00045	0.32	-0.3
9,922	-		DDA3937_RS00045	0.33	-1.3
10,083	+		DDA3937_RS00045	0.51	-0.6
10,084	-		DDA3937_RS00045	0.51	+0.5
10,255	-		DDA3937_RS00045	0.70	-0.3
10,337	+		DDA3937_RS00045	0.80	-0.6
10,516	+				-0.2
10,516	+				+0.6
10,516	+				-1.4
10,516	+				-1.1
10,517	-				-0.3
10,517	-				-0.1
10,517	-				-0.5
10,517	-				+0.9
10,519	+				-1.7
10,519	+				-0.6
10,520	-				-0.4
10,520	-				-0.8
10,535	+				-0.7
10,535	+				-0.1
10,536	-				-1.0
10,539	-				+1.1
10,539	-				-1.2
10,539	-				-0.4
10,549	+				-1.1
10,549	+				-0.2
10,549	+				+0.1
10,550	-				-0.3
10,550	-				-0.3
10,550	-				+0.9
10,550	-				-1.8
10,550	-				+0.2
10,550	-				+0.0
10,550	-				+0.6
10,550	-				-0.5
10,550	-				-1.4
10,552	+				-1.6
10,552	+				-0.0
10,552	+				+0.9
10,553	-				+1.4
10,553	-				+0.5
10,580	+				-1.7
10,581	-				+0.1
10,624	-				-0.5
10,624	-				+1.9
10,624	-				-0.9
10,651	+				+0.3
10,651	+				-0.1
10,652	-				-1.0
10,652	-				-0.4
10,652	-				+0.3
10,652	-				-0.9
10,706	+		DDA3937_RS00050	0.11	+0.1
10,706	+		DDA3937_RS00050	0.11	+0.0
10,706	+		DDA3937_RS00050	0.11	-1.0
10,706	+		DDA3937_RS00050	0.11	-0.8
10,707	-		DDA3937_RS00050	0.11	-0.5
10,707	-		DDA3937_RS00050	0.11	-1.2
10,707	-		DDA3937_RS00050	0.11	-1.4
10,707	-		DDA3937_RS00050	0.11	-0.6
10,707	-		DDA3937_RS00050	0.11	+0.9
10,707	-		DDA3937_RS00050	0.11	-0.2
10,707	-		DDA3937_RS00050	0.11	-1.2
10,707	-		DDA3937_RS00050	0.11	-0.4
10,781	-		DDA3937_RS00050	0.19	-1.5
10,816	+		DDA3937_RS00050	0.23	+0.7
10,817	-		DDA3937_RS00050	0.23	-2.6
10,834	+		DDA3937_RS00050	0.25	-0.3
10,970	+		DDA3937_RS00050	0.39	-0.1
10,971	-		DDA3937_RS00050	0.40	-0.1
10,971	-		DDA3937_RS00050	0.40	-1.7
10,971	-		DDA3937_RS00050	0.40	-0.5
10,996	+		DDA3937_RS00050	0.42	+0.6
11,242	+		DDA3937_RS00050	0.69	-0.2
11,243	-		DDA3937_RS00050	0.69	-0.9
11,243	-		DDA3937_RS00050	0.69	-0.7
11,243	-		DDA3937_RS00050	0.69	-1.3
11,260	-		DDA3937_RS00050	0.71	-1.3
11,260	-		DDA3937_RS00050	0.71	-0.9
11,266	+		DDA3937_RS00050	0.71	-0.1
11,266	+		DDA3937_RS00050	0.71	-0.5
11,266	+		DDA3937_RS00050	0.71	-0.9
11,266	+		DDA3937_RS00050	0.71	-0.4
11,266	+		DDA3937_RS00050	0.71	-0.5
11,267	-		DDA3937_RS00050	0.72	-1.5
11,267	-		DDA3937_RS00050	0.72	-1.4
11,267	-		DDA3937_RS00050	0.72	-1.8
11,267	-		DDA3937_RS00050	0.72	-0.9
11,267	-		DDA3937_RS00050	0.72	+0.8
11,267	-		DDA3937_RS00050	0.72	+0.9
11,267	-		DDA3937_RS00050	0.72	-0.6
11,267	-		DDA3937_RS00050	0.72	+0.0
11,267	-		DDA3937_RS00050	0.72	+0.5
11,317	+		DDA3937_RS00050	0.77	+0.2
11,317	+		DDA3937_RS00050	0.77	+0.3
11,317	+		DDA3937_RS00050	0.77	-0.6
11,317	+		DDA3937_RS00050	0.77	-1.3
11,318	-		DDA3937_RS00050	0.77	-1.0
11,318	-		DDA3937_RS00050	0.77	-0.3
11,318	-		DDA3937_RS00050	0.77	-2.5
11,318	-		DDA3937_RS00050	0.77	-1.0
11,318	-		DDA3937_RS00050	0.77	-0.7
11,528	+				-0.1
11,528	+				+0.2
11,528	+				+2.3
11,529	-				+0.1
11,529	-				-0.1
11,529	-				-0.3
11,596	+				-0.1
11,596	+				+0.2
11,596	+				+0.2
11,597	-				-0.8
11,597	-				+0.0
11,605	+				+0.1
11,606	-				-0.4
11,606	-				-1.0
11,606	-				+1.3
11,612	+				-0.0
11,612	+				-0.2
11,612	+				+0.2
11,612	+				-2.1
11,613	-				-2.6
11,613	-				-0.2
11,666	+		DDA3937_RS00055	0.13	-0.3
11,666	+		DDA3937_RS00055	0.13	+0.2
11,667	-		DDA3937_RS00055	0.13	-0.5
11,667	-		DDA3937_RS00055	0.13	-1.2
11,689	+		DDA3937_RS00055	0.15	+0.1
11,740	+		DDA3937_RS00055	0.20	-0.5
11,740	+		DDA3937_RS00055	0.20	+1.5
11,740	+		DDA3937_RS00055	0.20	+0.5
11,741	-		DDA3937_RS00055	0.21	+0.1
11,753	+		DDA3937_RS00055	0.22	-0.4
11,753	+		DDA3937_RS00055	0.22	-0.9
11,753	+		DDA3937_RS00055	0.22	+1.2
11,753	+		DDA3937_RS00055	0.22	-1.0
11,753	+		DDA3937_RS00055	0.22	-0.4
11,754	-		DDA3937_RS00055	0.22	-0.7
11,789	+		DDA3937_RS00055	0.25	+0.0
11,789	+		DDA3937_RS00055	0.25	-0.4
11,789	+		DDA3937_RS00055	0.25	-0.5
11,802	-		DDA3937_RS00055	0.27	-0.7
11,808	+		DDA3937_RS00055	0.27	+0.2
11,809	-		DDA3937_RS00055	0.27	-1.6
11,809	-		DDA3937_RS00055	0.27	-1.2
11,809	-		DDA3937_RS00055	0.27	-1.3
11,809	-		DDA3937_RS00055	0.27	-1.3
11,809	-		DDA3937_RS00055	0.27	+0.3
11,809	-		DDA3937_RS00055	0.27	-0.7
11,809	-		DDA3937_RS00055	0.27	-1.9
11,821	+				-0.7
11,821	+		DDA3937_RS00055	0.29	-0.6
11,821	+		DDA3937_RS00055	0.29	-1.3
11,865	+		DDA3937_RS00055	0.33	+1.3
11,865	+		DDA3937_RS00055	0.33	-0.5
11,865	+		DDA3937_RS00055	0.33	-0.1
11,865	+		DDA3937_RS00055	0.33	-0.6
11,865	+		DDA3937_RS00055	0.33	-0.5
11,865	+		DDA3937_RS00055	0.33	-1.9
11,866	-		DDA3937_RS00055	0.33	-0.4
11,866	-		DDA3937_RS00055	0.33	-0.1
11,866	-		DDA3937_RS00055	0.33	-1.0
11,866	-		DDA3937_RS00055	0.33	+0.1
11,866	-		DDA3937_RS00055	0.33	-2.7
11,902	+		DDA3937_RS00055	0.37	-0.7
11,902	+		DDA3937_RS00055	0.37	-1.1
11,902	+		DDA3937_RS00055	0.37	-0.4
11,903	-		DDA3937_RS00055	0.37	+1.3
11,903	-		DDA3937_RS00055	0.37	-0.5
11,914	+		DDA3937_RS00055	0.38	+0.0
11,914	+		DDA3937_RS00055	0.38	-2.1
11,914	+		DDA3937_RS00055	0.38	-0.5
11,914	+		DDA3937_RS00055	0.38	-0.3
11,915	-		DDA3937_RS00055	0.38	-0.8
11,915	-		DDA3937_RS00055	0.38	-0.9
11,932	+		DDA3937_RS00055	0.40	-0.6
11,932	+		DDA3937_RS00055	0.40	-0.1
11,932	+		DDA3937_RS00055	0.40	-0.8
11,933	-		DDA3937_RS00055	0.40	+0.3
11,933	-		DDA3937_RS00055	0.40	-0.7
11,933	-		DDA3937_RS00055	0.40	-0.2
11,933	-		DDA3937_RS00055	0.40	-1.4
11,950	+		DDA3937_RS00055	0.41	+0.7
11,950	+		DDA3937_RS00055	0.41	-0.2
11,950	+		DDA3937_RS00055	0.41	+0.8
11,950	+		DDA3937_RS00055	0.41	+0.2
11,950	+		DDA3937_RS00055	0.41	-0.1
11,950	+		DDA3937_RS00055	0.41	+0.1
11,950	+		DDA3937_RS00055	0.41	-0.6
11,950	+		DDA3937_RS00055	0.41	+1.3
11,950	+		DDA3937_RS00055	0.41	+0.3
11,950	+		DDA3937_RS00055	0.41	-0.7
11,950	+		DDA3937_RS00055	0.41	-0.5
11,950	+		DDA3937_RS00055	0.41	-1.0
11,951	-		DDA3937_RS00055	0.41	-0.1
11,951	-		DDA3937_RS00055	0.41	-1.0
11,951	-		DDA3937_RS00055	0.41	-1.1
11,951	-		DDA3937_RS00055	0.41	-0.3
11,951	-		DDA3937_RS00055	0.41	-3.3
11,951	-		DDA3937_RS00055	0.41	+0.0
11,951	-		DDA3937_RS00055	0.41	-0.3
11,951	-		DDA3937_RS00055	0.41	-1.1
11,951	-		DDA3937_RS00055	0.41	-1.0
11,951	-		DDA3937_RS00055	0.41	+0.1
11,951	-		DDA3937_RS00055	0.41	+0.2
12,001	+		DDA3937_RS00055	0.46	+0.3
12,002	-		DDA3937_RS00055	0.47	-0.0
12,002	-		DDA3937_RS00055	0.47	-0.8
12,044	+		DDA3937_RS00055	0.51	-0.4
12,044	+		DDA3937_RS00055	0.51	-0.5
12,045	-		DDA3937_RS00055	0.51	-1.5
12,079	+		DDA3937_RS00055	0.54	+0.8
12,079	+		DDA3937_RS00055	0.54	+0.2
12,080	-		DDA3937_RS00055	0.54	-1.1
12,133	+		DDA3937_RS00055	0.60	-0.8
12,134	-		DDA3937_RS00055	0.60	+1.3
12,143	+		DDA3937_RS00055	0.61	-0.4
12,143	+		DDA3937_RS00055	0.61	-0.9
12,143	+		DDA3937_RS00055	0.61	-1.2
12,143	+		DDA3937_RS00055	0.61	-0.3
12,143	+		DDA3937_RS00055	0.61	-0.5
12,143	+		DDA3937_RS00055	0.61	+0.0
12,143	+		DDA3937_RS00055	0.61	-0.1
12,143	+		DDA3937_RS00055	0.61	-0.4
12,143	+		DDA3937_RS00055	0.61	-0.1
12,144	-		DDA3937_RS00055	0.61	-0.2
12,144	-		DDA3937_RS00055	0.61	+0.0
12,144	-		DDA3937_RS00055	0.61	+0.4
12,144	-		DDA3937_RS00055	0.61	-0.6
12,144	-		DDA3937_RS00055	0.61	+0.1
12,144	-		DDA3937_RS00055	0.61	-0.8
12,144	-		DDA3937_RS00055	0.61	-0.3
12,144	-		DDA3937_RS00055	0.61	-0.4
12,144	-		DDA3937_RS00055	0.61	-1.7
12,144	-		DDA3937_RS00055	0.61	-1.5
12,144	-		DDA3937_RS00055	0.61	-0.9
12,144	-		DDA3937_RS00055	0.61	-0.7
12,174	-		DDA3937_RS00055	0.64	-0.1
12,263	-		DDA3937_RS00055	0.73	-2.1
12,269	-		DDA3937_RS00055	0.73	-0.6
12,277	+		DDA3937_RS00055	0.74	-0.4
12,278	-		DDA3937_RS00055	0.74	-0.5
12,294	-		DDA3937_RS00055	0.76	-0.7
12,322	+		DDA3937_RS00055	0.78	-0.7
12,322	+		DDA3937_RS00055	0.78	-1.3
12,322	+		DDA3937_RS00055	0.78	+0.3
12,322	+		DDA3937_RS00055	0.78	-0.4
12,322	+		DDA3937_RS00055	0.78	+0.3
12,322	+		DDA3937_RS00055	0.78	-1.1
12,334	+		DDA3937_RS00055	0.80	-0.5
12,350	+		DDA3937_RS00055	0.81	-0.5
12,374	+				+2.9
12,374	+		DDA3937_RS00055	0.84	-0.5
12,374	+		DDA3937_RS00055	0.84	-1.2
12,374	+		DDA3937_RS00055	0.84	-2.0
12,375	-		DDA3937_RS00055	0.84	+0.3
12,409	+		DDA3937_RS00055	0.87	-0.3
12,410	-		DDA3937_RS00055	0.87	-1.2
12,410	-		DDA3937_RS00055	0.87	-0.1
12,410	-		DDA3937_RS00055	0.87	-1.4
12,439	+				-1.0
12,440	-				-0.4
12,483	+				+0.6
12,483	+				-0.3
12,483	+				+0.5
12,483	+				+0.1
12,483	+				-1.0
12,483	+				-1.1
12,483	+				+0.5
12,484	-				-1.1
12,484	-				+0.3
12,484	-				-1.6
12,484	-				-0.5
12,484	-				-1.5
12,504	+				-0.8
12,504	+				-1.0
12,504	+				-0.4