Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22630

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,893,904	-				+1.0
4,893,925	+				+1.5
4,893,925	+				+1.8
4,893,925	+				+0.4
4,893,925	+				-1.7
4,893,980	+				+1.9
4,894,100	+		DZA65_RS22625	0.23	+0.1
4,894,100	+		DZA65_RS22625	0.23	+1.7
4,894,100	+		DZA65_RS22625	0.23	-0.3
4,894,100	+		DZA65_RS22625	0.23	-0.1
4,894,100	+		DZA65_RS22625	0.23	+2.1
4,894,100	+		DZA65_RS22625	0.23	+0.1
4,894,101	-		DZA65_RS22625	0.23	+0.4
4,894,101	-		DZA65_RS22625	0.23	+1.4
4,894,171	+		DZA65_RS22625	0.31	+0.5
4,894,299	+		DZA65_RS22625	0.45	+0.8
4,894,398	-		DZA65_RS22625	0.56	-0.1
4,894,398	-		DZA65_RS22625	0.56	-0.9
4,894,442	-		DZA65_RS22625	0.61	-0.9
4,894,442	-		DZA65_RS22625	0.61	-0.2
4,894,538	+		DZA65_RS22625	0.72	+0.5
4,894,539	-		DZA65_RS22625	0.72	-1.5
4,894,540	+		DZA65_RS22625	0.72	+4.5
4,894,540	+		DZA65_RS22625	0.72	+0.1
4,894,540	+		DZA65_RS22625	0.72	+0.9
4,894,541	-		DZA65_RS22625	0.72	-0.8
4,894,541	-		DZA65_RS22625	0.72	-0.2
4,894,541	-		DZA65_RS22625	0.72	+0.1
4,894,580	+		DZA65_RS22625	0.76	-0.7
4,894,580	+		DZA65_RS22625	0.76	+1.5
4,894,580	+		DZA65_RS22625	0.76	+0.8
4,894,580	+		DZA65_RS22625	0.76	+1.9
4,894,580	+		DZA65_RS22625	0.76	+0.9
4,894,580	+		DZA65_RS22625	0.76	+0.5
4,894,580	+		DZA65_RS22625	0.76	+1.7
4,894,581	-		DZA65_RS22625	0.76	+3.2
4,894,581	-		DZA65_RS22625	0.76	+1.1
4,894,581	-		DZA65_RS22625	0.76	-0.5
4,894,581	-		DZA65_RS22625	0.76	-0.2
4,894,581	-		DZA65_RS22625	0.76	-1.1
4,894,581	-		DZA65_RS22625	0.76	+0.8
4,894,581	-		DZA65_RS22625	0.76	-0.1
4,894,581	-		DZA65_RS22625	0.76	-0.5
4,894,581	-		DZA65_RS22625	0.76	+0.5
4,894,582	+		DZA65_RS22625	0.77	-1.5
4,894,582	+		DZA65_RS22625	0.77	+0.1
4,894,582	+		DZA65_RS22625	0.77	-1.0
4,894,582	+		DZA65_RS22625	0.77	-0.5
4,894,582	+		DZA65_RS22625	0.77	+0.8
4,894,582	+		DZA65_RS22625	0.77	+0.4
4,894,582	+		DZA65_RS22625	0.77	+0.9
4,894,583	-		DZA65_RS22625	0.77	-1.5
4,894,583	-		DZA65_RS22625	0.77	-0.6
4,894,583	-		DZA65_RS22625	0.77	-0.6
4,894,706	-				-0.5
4,894,706	-				-0.5
4,894,798	+				+0.3
4,894,798	+				-0.9
4,894,798	+				-0.7
4,894,798	+				-0.2
4,894,798	+				+0.1
4,894,798	+				-1.0
4,894,798	+				+1.1
4,894,799	-				+0.5
4,894,799	-				-0.8
4,894,799	-				-0.7
4,894,799	-				-0.1
4,894,799	-				-0.5
4,894,832	+				+0.5
4,894,840	+				-1.1
4,894,840	+				-1.5
4,894,840	+				-1.5
4,894,841	-				-1.5
4,894,841	-				-0.6
4,894,841	-				-0.1
4,894,843	+				-1.5
4,894,843	+				-0.7
4,894,843	+				+0.3
4,894,844	-				-0.5
4,894,848	+				-0.4
4,894,848	+				+1.1
4,894,849	-				+0.2
4,894,872	-				+0.4
4,894,872	-				+3.0
4,894,963	+		DZA65_RS22630	0.10	+0.8
4,894,963	+		DZA65_RS22630	0.10	+1.1
4,894,964	-		DZA65_RS22630	0.10	+0.3
4,895,025	+		DZA65_RS22630	0.14	+1.3
4,895,025	+		DZA65_RS22630	0.14	+0.1
4,895,025	+		DZA65_RS22630	0.14	-1.5
4,895,026	-		DZA65_RS22630	0.14	+2.0
4,895,026	-		DZA65_RS22630	0.14	-0.2
4,895,028	+		DZA65_RS22630	0.14	+0.9
4,895,028	+		DZA65_RS22630	0.14	-1.2
4,895,086	+		DZA65_RS22630	0.18	-1.2
4,895,087	-		DZA65_RS22630	0.18	-1.9
4,895,087	-		DZA65_RS22630	0.18	+1.0
4,895,087	-		DZA65_RS22630	0.18	+0.6
4,895,122	-		DZA65_RS22630	0.20	-0.9
4,895,143	-		DZA65_RS22630	0.21	+1.5
4,895,146	+		DZA65_RS22630	0.21	-0.5
4,895,147	-		DZA65_RS22630	0.21	+0.8
4,895,147	-		DZA65_RS22630	0.21	-0.6
4,895,167	+		DZA65_RS22630	0.23	+0.3
4,895,167	+		DZA65_RS22630	0.23	+0.4
4,895,168	-		DZA65_RS22630	0.23	+0.9
4,895,168	-		DZA65_RS22630	0.23	+1.5
4,895,168	-		DZA65_RS22630	0.23	-0.3
4,895,168	-		DZA65_RS22630	0.23	-0.1
4,895,182	+				+1.1
4,895,182	+		DZA65_RS22630	0.24	+2.4
4,895,182	+		DZA65_RS22630	0.24	+0.3
4,895,182	+		DZA65_RS22630	0.24	+1.5
4,895,182	+		DZA65_RS22630	0.24	+0.5
4,895,182	+		DZA65_RS22630	0.24	+0.1
4,895,183	-		DZA65_RS22630	0.24	+1.6
4,895,183	-		DZA65_RS22630	0.24	-0.0
4,895,183	-		DZA65_RS22630	0.24	+0.1
4,895,183	-		DZA65_RS22630	0.24	+0.8
4,895,183	-		DZA65_RS22630	0.24	-0.2
4,895,183	-				+1.5
4,895,183	-		DZA65_RS22630	0.24	-1.0
4,895,183	-		DZA65_RS22630	0.24	-0.4
4,895,200	-		DZA65_RS22630	0.25	+1.4
4,895,200	-		DZA65_RS22630	0.25	-0.7
4,895,200	-		DZA65_RS22630	0.25	+0.8
4,895,200	-		DZA65_RS22630	0.25	-0.5
4,895,200	-		DZA65_RS22630	0.25	-1.6
4,895,272	-		DZA65_RS22630	0.29	-1.5
4,895,284	+		DZA65_RS22630	0.30	+0.1
4,895,284	+		DZA65_RS22630	0.30	-1.2
4,895,285	-				+0.1
4,895,410	+		DZA65_RS22630	0.37	-1.2
4,895,497	+		DZA65_RS22630	0.42	-1.5
4,895,497	+		DZA65_RS22630	0.42	+1.1
4,895,497	+		DZA65_RS22630	0.42	-1.7
4,895,497	+		DZA65_RS22630	0.42	-0.5
4,895,498	-		DZA65_RS22630	0.43	-1.0
4,895,517	+		DZA65_RS22630	0.44	-1.2
4,895,517	+		DZA65_RS22630	0.44	+0.8
4,895,517	+		DZA65_RS22630	0.44	-1.8
4,895,517	+		DZA65_RS22630	0.44	-1.0
4,895,517	+		DZA65_RS22630	0.44	-0.1
4,895,517	+		DZA65_RS22630	0.44	+0.4
4,895,517	+		DZA65_RS22630	0.44	+0.4
4,895,517	+		DZA65_RS22630	0.44	+0.4
4,895,517	+		DZA65_RS22630	0.44	-0.7
4,895,517	+		DZA65_RS22630	0.44	+1.1
4,895,518	-		DZA65_RS22630	0.44	+0.9
4,895,518	-		DZA65_RS22630	0.44	+0.3
4,895,518	-		DZA65_RS22630	0.44	+1.4
4,895,518	-		DZA65_RS22630	0.44	+0.6
4,895,518	-		DZA65_RS22630	0.44	+0.9
4,895,570	-		DZA65_RS22630	0.47	-0.3
4,895,572	+		DZA65_RS22630	0.47	+0.1
4,895,572	+		DZA65_RS22630	0.47	+0.5
4,895,573	-		DZA65_RS22630	0.47	+2.1
4,895,573	-		DZA65_RS22630	0.47	+0.5
4,895,573	-		DZA65_RS22630	0.47	-0.6
4,895,573	-		DZA65_RS22630	0.47	-0.3
4,895,674	+		DZA65_RS22630	0.53	+1.1
4,895,740	+		DZA65_RS22630	0.57	+0.5
4,895,740	+		DZA65_RS22630	0.57	-0.2
4,895,740	+		DZA65_RS22630	0.57	+0.1
4,895,740	+		DZA65_RS22630	0.57	-0.5
4,895,740	+		DZA65_RS22630	0.57	-0.9
4,895,740	+		DZA65_RS22630	0.57	+1.1
4,895,741	-		DZA65_RS22630	0.57	-0.5
4,895,741	-		DZA65_RS22630	0.57	+1.1
4,895,741	-		DZA65_RS22630	0.57	+0.6
4,895,741	-		DZA65_RS22630	0.57	-0.0
4,895,741	-		DZA65_RS22630	0.57	+0.1
4,895,741	-		DZA65_RS22630	0.57	+0.5
4,895,741	-		DZA65_RS22630	0.57	+0.1
4,895,741	-		DZA65_RS22630	0.57	-2.0
4,895,914	+		DZA65_RS22630	0.68	+0.1
4,895,914	+		DZA65_RS22630	0.68	+1.5
4,895,914	+		DZA65_RS22630	0.68	+1.5
4,895,914	+		DZA65_RS22630	0.68	-0.6
4,895,914	+		DZA65_RS22630	0.68	+1.1
4,895,914	+		DZA65_RS22630	0.68	+0.6
4,895,915	-		DZA65_RS22630	0.68	-0.4
4,895,915	-		DZA65_RS22630	0.68	-2.2
4,896,151	+		DZA65_RS22630	0.82	-1.5
4,896,151	+		DZA65_RS22630	0.82	+1.3
4,896,152	-		DZA65_RS22630	0.82	-1.3
4,896,152	-		DZA65_RS22630	0.82	-0.9
4,896,152	-		DZA65_RS22630	0.82	+0.1
4,896,213	+		DZA65_RS22630	0.86	+0.1
4,896,223	+		DZA65_RS22630	0.86	-0.5
4,896,223	+		DZA65_RS22630	0.86	-0.3
4,896,223	+		DZA65_RS22630	0.86	+0.5
4,896,223	+		DZA65_RS22630	0.86	-1.2
4,896,223	+		DZA65_RS22630	0.86	+0.0
4,896,224	-		DZA65_RS22630	0.86	+1.5
4,896,224	-		DZA65_RS22630	0.86	-0.2
4,896,224	-		DZA65_RS22630	0.86	+1.1
4,896,224	-		DZA65_RS22630	0.86	+0.1
4,896,224	-		DZA65_RS22630	0.86	-1.2
4,896,224	-		DZA65_RS22630	0.86	-0.3
4,896,248	-		DZA65_RS22630	0.88	+0.3
4,896,353	+				-0.3
4,896,353	+				+0.4
4,896,400	+				+3.1
4,896,400	+				+1.1
4,896,400	+				-0.5
4,896,400	+				+0.4
4,896,401	-				-1.5
4,896,401	-				-0.9
4,896,401	-				-2.7
4,896,401	-				+0.7
4,896,402	+				-2.7
4,896,402	+				+0.3
4,896,402	+				-0.6
4,896,402	+				-0.5
4,896,402	+				-1.7
4,896,403	-				+1.1
4,896,403	-				+0.1
4,896,403	-				-0.1
4,896,403	-				+1.1
4,896,403	-				+0.5
4,896,403	-				-0.1
4,896,428	+				+0.5
4,896,429	-				-3.0
4,896,429	-				-0.2
4,896,431	+				+0.1
4,896,431	+				+0.1
4,896,431	+				-0.9
4,896,431	+				-0.2
4,896,431	+				+0.3
4,896,431	+				+0.5
4,896,432	-				+0.7
4,896,432	-				+0.5
4,896,432	-				+1.7
4,896,432	-				-1.0
4,896,432	-				-0.5
4,896,432	-				-0.7
4,896,432	-				+1.9
4,896,432	-				+1.8
4,896,432	-				-0.7
4,896,456	+				-0.8
4,896,456	+				-1.6
4,896,456	+				-0.4
4,896,456	+				+1.1
4,896,456	+				-1.5
4,896,457	-				-1.8
4,896,457	-				-0.6
4,896,557	+		DZA65_RS22635	0.32	-0.5
4,896,719	+		DZA65_RS22635	0.80	-2.0
4,896,719	+		DZA65_RS22635	0.80	-1.5
4,896,719	+		DZA65_RS22635	0.80	+2.1
4,896,719	+		DZA65_RS22635	0.80	+2.9
4,896,719	+				+1.1
4,896,719	+		DZA65_RS22635	0.80	+0.5
4,896,719	+		DZA65_RS22635	0.80	-0.2
4,896,720	-				+0.5
4,896,720	-		DZA65_RS22635	0.80	-0.5
4,896,720	-		DZA65_RS22635	0.80	+1.1
4,896,720	-		DZA65_RS22635	0.80	-3.0
4,896,763	+				+0.9
4,896,763	+				-1.5
4,896,763	+				+0.8
4,896,764	-				+2.7
4,896,764	-				-1.0
4,896,764	-				-0.7
4,896,764	-				-0.2
4,896,764	-				+0.3
4,896,764	-				+2.4
4,896,764	-				+0.1
4,896,794	+				-0.2
4,896,810	+				+0.1
4,896,810	+				+0.1
4,896,810	+				+1.7
4,896,811	-				-0.9
4,896,895	+		DZA65_RS22640	0.28	+0.5
4,896,895	+		DZA65_RS22640	0.28	-0.5
4,896,895	+		DZA65_RS22640	0.28	-0.5
4,896,896	-		DZA65_RS22640	0.28	-0.5
4,896,896	-		DZA65_RS22640	0.28	+0.1
4,896,896	-		DZA65_RS22640	0.28	-1.2
4,896,956	+		DZA65_RS22640	0.43	+0.5
4,896,956	+		DZA65_RS22640	0.43	-0.9
4,896,956	+		DZA65_RS22640	0.43	+1.1
4,896,982	+		DZA65_RS22640	0.49	+0.4
4,896,983	-		DZA65_RS22640	0.50	+2.4
4,897,017	-		DZA65_RS22640	0.58	+0.7
4,897,037	+		DZA65_RS22640	0.63	-0.5
4,897,037	+		DZA65_RS22640	0.63	+1.0
4,897,037	+		DZA65_RS22640	0.63	-2.2
4,897,037	+		DZA65_RS22640	0.63	-1.2
4,897,038	-		DZA65_RS22640	0.63	+0.2
4,897,038	-		DZA65_RS22640	0.63	+0.9
4,897,038	-		DZA65_RS22640	0.63	+0.5
4,897,038	-		DZA65_RS22640	0.63	-1.7
4,897,123	+		DZA65_RS22640	0.85	-1.5
4,897,134	+		DZA65_RS22640	0.87	-0.7
4,897,134	+		DZA65_RS22640	0.87	+0.8
4,897,134	+		DZA65_RS22640	0.87	+1.1
4,897,134	+		DZA65_RS22640	0.87	-2.4
4,897,282	-				-0.8
4,897,282	-				-0.9
4,897,282	-				+1.5
4,897,289	+				+0.6
4,897,289	+				-0.7
4,897,289	+				-0.9
4,897,289	+				-0.3
4,897,289	+				+0.7
4,897,289	+				-0.6
4,897,289	+				+0.1
4,897,289	+				-1.0
4,897,289	+				-1.6
4,897,289	+				+0.1
4,897,289	+				+0.1
4,897,289	+				-1.3
4,897,289	+				+0.9
4,897,289	+				-0.9
4,897,289	+				-0.3
4,897,289	+				-1.5
4,897,289	+				+0.8
4,897,289	+				+0.4
4,897,289	+				-0.3
4,897,289	+				+1.4
4,897,289	+				-1.3
4,897,289	+				+0.1
4,897,289	+				-0.9
4,897,290	-				-0.6
4,897,290	-				-0.5
4,897,290	-				-1.3
4,897,290	-				+1.9
4,897,290	-				+1.0
4,897,290	-				+0.6
4,897,290	-				-0.1
4,897,290	-				+0.3
4,897,290	-				+0.4
4,897,290	-				-0.3
4,897,290	-				-2.1
4,897,290	-				+2.1
4,897,290	-				+1.4
4,897,290	-				+0.5
4,897,290	-				-2.2
4,897,293	+				+0.4
4,897,339	-		DZA65_RS22645	0.12	+0.5
4,897,357	+		DZA65_RS22645	0.15	-0.7
4,897,358	-		DZA65_RS22645	0.16	-0.0
4,897,358	-		DZA65_RS22645	0.16	-0.9
4,897,386	+		DZA65_RS22645	0.21	+1.1
4,897,387	-		DZA65_RS22645	0.21	+0.4