Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22600

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,884,945	+				-0.9
4,884,945	+				+0.1
4,884,945	+				+0.6
4,884,945	+				-1.3
4,884,945	+				-1.2
4,884,945	+				-0.5
4,884,945	+				-0.4
4,884,946	-				-0.9
4,884,946	-				-0.4
4,884,953	+				-1.7
4,884,954	-				+0.1
4,884,954	-				+1.3
4,884,955	+				-2.2
4,884,955	+				-1.5
4,884,955	+				-2.5
4,884,955	+				+0.4
4,884,955	+				-0.8
4,884,955	+				-2.6
4,884,956	-				-0.5
4,884,956	-				+1.5
4,884,956	-				+1.1
4,885,010	-		DZA65_RS22595	0.15	-0.9
4,885,021	+		DZA65_RS22595	0.16	-0.2
4,885,021	+		DZA65_RS22595	0.16	-0.9
4,885,021	+		DZA65_RS22595	0.16	+0.5
4,885,021	+		DZA65_RS22595	0.16	-0.6
4,885,021	+		DZA65_RS22595	0.16	-1.5
4,885,021	+		DZA65_RS22595	0.16	-0.2
4,885,021	+		DZA65_RS22595	0.16	+0.1
4,885,021	+		DZA65_RS22595	0.16	-0.5
4,885,021	+		DZA65_RS22595	0.16	+0.5
4,885,021	+		DZA65_RS22595	0.16	-0.4
4,885,021	+		DZA65_RS22595	0.16	-0.5
4,885,021	+		DZA65_RS22595	0.16	+0.7
4,885,021	+		DZA65_RS22595	0.16	-0.9
4,885,021	+		DZA65_RS22595	0.16	+0.3
4,885,021	+		DZA65_RS22595	0.16	+0.0
4,885,022	-		DZA65_RS22595	0.16	-0.2
4,885,022	-		DZA65_RS22595	0.16	+0.3
4,885,022	-		DZA65_RS22595	0.16	-1.3
4,885,022	-		DZA65_RS22595	0.16	+0.1
4,885,022	-		DZA65_RS22595	0.16	+0.3
4,885,022	-		DZA65_RS22595	0.16	-2.0
4,885,022	-		DZA65_RS22595	0.16	+1.1
4,885,078	+		DZA65_RS22595	0.24	+0.2
4,885,079	-		DZA65_RS22595	0.24	-1.9
4,885,079	-		DZA65_RS22595	0.24	+0.1
4,885,115	+		DZA65_RS22595	0.29	+0.8
4,885,115	+		DZA65_RS22595	0.29	-1.7
4,885,115	+		DZA65_RS22595	0.29	+0.3
4,885,115	+		DZA65_RS22595	0.29	+0.5
4,885,179	-		DZA65_RS22595	0.38	+0.8
4,885,211	+		DZA65_RS22595	0.42	-0.1
4,885,211	+		DZA65_RS22595	0.42	-0.5
4,885,211	+		DZA65_RS22595	0.42	+0.3
4,885,212	-		DZA65_RS22595	0.42	+0.6
4,885,212	-		DZA65_RS22595	0.42	-0.2
4,885,218	+		DZA65_RS22595	0.43	+0.5
4,885,218	+		DZA65_RS22595	0.43	-1.9
4,885,218	+		DZA65_RS22595	0.43	-0.0
4,885,218	+		DZA65_RS22595	0.43	-0.5
4,885,219	-		DZA65_RS22595	0.43	+0.9
4,885,219	-		DZA65_RS22595	0.43	+0.8
4,885,219	-		DZA65_RS22595	0.43	-1.2
4,885,486	+		DZA65_RS22595	0.79	-1.5
4,885,486	+		DZA65_RS22595	0.79	-0.6
4,885,486	+				+1.5
4,885,486	+				+1.7
4,885,487	-		DZA65_RS22595	0.79	-0.1
4,885,487	-		DZA65_RS22595	0.79	-0.8
4,885,487	-		DZA65_RS22595	0.79	-0.5
4,885,569	+				+0.3
4,885,569	+				-0.9
4,885,569	+				-0.5
4,885,569	+				-0.6
4,885,569	+				+0.5
4,885,569	+				+0.7
4,885,570	-				-1.2
4,885,570	-				+0.8
4,885,570	-				+0.1
4,885,570	-				+0.3
4,885,570	-				-1.0
4,885,570	-				-1.0
4,885,640	+				+0.7
4,885,640	+				+0.9
4,885,640	+				-0.3
4,885,641	-				-0.2
4,885,684	+				-1.2
4,885,736	+				-0.1
4,885,736	+				-0.3
4,885,736	+				+1.5
4,885,763	+				-0.0
4,885,775	-				-0.2
4,885,778	+				+1.1
4,885,778	+				-0.5
4,885,779	-				+0.2
4,885,779	-				-0.2
4,885,797	+				+0.3
4,885,797	+				-0.7
4,885,797	+				+1.8
4,885,797	+				-1.5
4,885,797	+				+1.1
4,885,797	+				-0.4
4,885,798	-				+1.0
4,885,798	-				+0.1
4,885,798	-				+0.6
4,885,798	-				-1.2
4,885,798	-				+0.1
4,885,853	+				-0.2
4,885,853	+				+1.1
4,885,853	+				-0.3
4,885,854	-				+2.0
4,885,854	-				-0.2
4,885,854	-				-0.8
4,885,854	-				-1.0
4,886,053	+		DZA65_RS22600	0.21	-0.4
4,886,053	+		DZA65_RS22600	0.21	+0.2
4,886,053	+		DZA65_RS22600	0.21	-0.6
4,886,054	-		DZA65_RS22600	0.22	-0.1
4,886,097	+		DZA65_RS22600	0.30	+1.5
4,886,097	+		DZA65_RS22600	0.30	+0.5
4,886,097	+		DZA65_RS22600	0.30	+1.3
4,886,097	+		DZA65_RS22600	0.30	-1.3
4,886,097	+		DZA65_RS22600	0.30	+0.4
4,886,097	+		DZA65_RS22600	0.30	-1.0
4,886,098	-		DZA65_RS22600	0.30	-0.9
4,886,098	-		DZA65_RS22600	0.30	+2.4
4,886,185	+		DZA65_RS22600	0.46	+3.4
4,886,185	+		DZA65_RS22600	0.46	-0.0
4,886,185	+		DZA65_RS22600	0.46	+0.4
4,886,185	+		DZA65_RS22600	0.46	-0.2
4,886,185	+		DZA65_RS22600	0.46	+0.7
4,886,185	+		DZA65_RS22600	0.46	-1.5
4,886,185	+		DZA65_RS22600	0.46	+0.5
4,886,186	-		DZA65_RS22600	0.46	+0.9
4,886,186	-		DZA65_RS22600	0.46	-1.3
4,886,186	-		DZA65_RS22600	0.46	-0.9
4,886,186	-		DZA65_RS22600	0.46	+0.1
4,886,186	-		DZA65_RS22600	0.46	+0.4
4,886,186	-		DZA65_RS22600	0.46	-0.6
4,886,186	-		DZA65_RS22600	0.46	-0.9
4,886,186	-		DZA65_RS22600	0.46	-1.2
4,886,186	-		DZA65_RS22600	0.46	+0.2
4,886,188	+		DZA65_RS22600	0.47	+0.5
4,886,189	-		DZA65_RS22600	0.47	+0.1
4,886,189	-		DZA65_RS22600	0.47	+0.1
4,886,208	+		DZA65_RS22600	0.50	+1.6
4,886,208	+		DZA65_RS22600	0.50	-0.8
4,886,208	+		DZA65_RS22600	0.50	-0.0
4,886,208	+		DZA65_RS22600	0.50	-0.4
4,886,209	-		DZA65_RS22600	0.51	+3.4
4,886,209	-		DZA65_RS22600	0.51	-0.6
4,886,209	-		DZA65_RS22600	0.51	-1.0
4,886,241	+		DZA65_RS22600	0.57	+0.8
4,886,241	+		DZA65_RS22600	0.57	-0.3
4,886,241	+		DZA65_RS22600	0.57	-0.0
4,886,241	+		DZA65_RS22600	0.57	-0.9
4,886,241	+		DZA65_RS22600	0.57	-0.3
4,886,242	-		DZA65_RS22600	0.57	-0.1
4,886,242	-		DZA65_RS22600	0.57	+0.2
4,886,242	-		DZA65_RS22600	0.57	+1.4
4,886,308	+		DZA65_RS22600	0.69	+0.1
4,886,308	+		DZA65_RS22600	0.69	+2.1
4,886,309	-		DZA65_RS22600	0.69	+0.6
4,886,309	-		DZA65_RS22600	0.69	-0.0
4,886,309	-		DZA65_RS22600	0.69	+0.5
4,886,334	+		DZA65_RS22600	0.74	+0.7
4,886,334	+		DZA65_RS22600	0.74	+0.9
4,886,338	+		DZA65_RS22600	0.75	-0.1
4,886,339	-		DZA65_RS22600	0.75	+0.9
4,886,339	-		DZA65_RS22600	0.75	+1.3
4,886,343	+		DZA65_RS22600	0.76	+0.8
4,886,344	-		DZA65_RS22600	0.76	-0.3
4,886,344	-		DZA65_RS22600	0.76	+0.3
4,886,516	+				+0.1
4,886,516	+				-1.1
4,886,516	+				+2.0
4,886,517	-				-0.5
4,886,517	-				+0.2
4,886,517	-				-1.2
4,886,517	-				-0.1
4,886,517	-				+1.1
4,886,517	-				+0.9
4,886,517	-				-0.1
4,886,538	-				-0.6
4,886,696	+		DZA65_RS22605	0.11	-1.6
4,886,696	+		DZA65_RS22605	0.11	+0.1
4,886,871	+		DZA65_RS22605	0.20	+0.3
4,886,871	+		DZA65_RS22605	0.20	-0.3
4,886,871	+		DZA65_RS22605	0.20	+0.1
4,886,871	+		DZA65_RS22605	0.20	-2.3
4,886,871	+		DZA65_RS22605	0.20	-0.5
4,886,871	+		DZA65_RS22605	0.20	-0.9
4,886,871	+		DZA65_RS22605	0.20	+0.6
4,886,871	+		DZA65_RS22605	0.20	+0.5
4,886,872	-		DZA65_RS22605	0.20	+1.0
4,886,872	-		DZA65_RS22605	0.20	+0.1
4,886,872	-		DZA65_RS22605	0.20	+1.6
4,886,872	-		DZA65_RS22605	0.20	-2.0
4,886,953	-		DZA65_RS22605	0.24	+0.7
4,886,953	-				-0.5
4,886,996	-		DZA65_RS22605	0.26	-0.7
4,886,996	-		DZA65_RS22605	0.26	-1.4
4,887,103	+		DZA65_RS22605	0.32	+0.5
4,887,103	+		DZA65_RS22605	0.32	-1.9
4,887,103	+		DZA65_RS22605	0.32	-1.3
4,887,103	+		DZA65_RS22605	0.32	-0.7
4,887,103	+		DZA65_RS22605	0.32	-1.0
4,887,103	+		DZA65_RS22605	0.32	-0.5
4,887,104	-		DZA65_RS22605	0.32	-0.2
4,887,104	-		DZA65_RS22605	0.32	-0.9
4,887,104	-		DZA65_RS22605	0.32	-2.6
4,887,104	-		DZA65_RS22605	0.32	-0.1
4,887,104	-		DZA65_RS22605	0.32	+1.6
4,887,104	-		DZA65_RS22605	0.32	-0.2
4,887,104	-		DZA65_RS22605	0.32	+1.9
4,887,104	-		DZA65_RS22605	0.32	+0.4
4,887,104	-		DZA65_RS22605	0.32	+1.6
4,887,104	-		DZA65_RS22605	0.32	-0.2
4,887,104	-		DZA65_RS22605	0.32	+0.5
4,887,175	+		DZA65_RS22605	0.35	-2.3
4,887,176	-		DZA65_RS22605	0.35	-1.0
4,887,223	+		DZA65_RS22605	0.38	+1.0
4,887,224	-		DZA65_RS22605	0.38	-0.6
4,887,243	+		DZA65_RS22605	0.39	+1.6
4,887,243	+		DZA65_RS22605	0.39	-0.6
4,887,243	+		DZA65_RS22605	0.39	-0.1
4,887,244	-		DZA65_RS22605	0.39	-0.9
4,887,244	-		DZA65_RS22605	0.39	+0.4
4,887,244	-		DZA65_RS22605	0.39	-1.9
4,887,244	-		DZA65_RS22605	0.39	+0.5
4,887,244	-		DZA65_RS22605	0.39	+0.6
4,887,299	+		DZA65_RS22605	0.41	-1.9
4,887,299	+		DZA65_RS22605	0.41	+0.4
4,887,299	+		DZA65_RS22605	0.41	+0.5
4,887,300	-		DZA65_RS22605	0.41	-2.0
4,887,302	+		DZA65_RS22605	0.42	-0.9
4,887,302	+		DZA65_RS22605	0.42	+1.1
4,887,302	+		DZA65_RS22605	0.42	+0.5
4,887,303	-		DZA65_RS22605	0.42	+1.0
4,887,303	-		DZA65_RS22605	0.42	-0.9
4,887,303	-		DZA65_RS22605	0.42	-0.0
4,887,303	-		DZA65_RS22605	0.42	+0.5
4,887,303	-		DZA65_RS22605	0.42	-0.9
4,887,303	-		DZA65_RS22605	0.42	-0.2
4,887,303	-		DZA65_RS22605	0.42	+0.2
4,887,303	-		DZA65_RS22605	0.42	+0.3
4,887,333	+		DZA65_RS22605	0.43	-1.7
4,887,333	+		DZA65_RS22605	0.43	+0.3
4,887,333	+		DZA65_RS22605	0.43	+1.4
4,887,334	-		DZA65_RS22605	0.43	-1.0
4,887,438	+		DZA65_RS22605	0.48	-0.5
4,887,438	+		DZA65_RS22605	0.48	-0.9
4,887,439	-		DZA65_RS22605	0.48	+0.1