Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22580

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,880,785	+				-0.9
4,880,785	+				+0.9
4,880,786	-				+2.4
4,880,786	-				-1.0
4,880,786	-				-0.6
4,880,799	+				+0.1
4,880,800	-				+1.0
4,880,800	-				+1.0
4,880,811	+				-1.2
4,880,811	+				-0.3
4,880,811	+				+2.0
4,880,811	+				+1.0
4,880,812	-				+0.3
4,880,812	-				-0.1
4,880,887	+				-0.9
4,880,887	+				+0.5
4,880,887	+				+0.0
4,880,887	+				-0.2
4,880,887	+				-0.2
4,880,887	+				+1.1
4,880,887	+				-0.5
4,880,887	+				+0.2
4,880,890	+				+0.5
4,880,890	+				-0.4
4,880,890	+				-1.5
4,880,890	+				-1.0
4,880,890	+				-1.0
4,880,890	+				+0.7
4,880,890	+				-0.1
4,880,890	+				-0.2
4,880,890	+				-0.8
4,880,890	+				+0.3
4,880,896	+				-1.7
4,880,896	+				+0.1
4,880,896	+				+0.5
4,880,951	-				+1.4
4,880,966	+				-1.3
4,880,966	+				+1.1
4,880,966	+				-0.5
4,880,966	+				+0.1
4,880,966	+				-1.9
4,880,966	+				+0.8
4,880,966	+				-0.4
4,880,966	+				+0.3
4,880,966	+				-0.2
4,880,966	+				+1.7
4,880,967	-				+1.3
4,880,967	-				+1.1
4,880,967	-				+0.3
4,880,967	-				-0.0
4,881,017	+				+0.5
4,881,018	-				+0.8
4,881,018	-				+0.8
4,881,018	-				+0.3
4,881,036	-				-0.5
4,881,075	+				-1.2
4,881,075	+				-0.9
4,881,076	-				+0.2
4,881,106	+		DZA65_RS22575	0.12	-2.3
4,881,107	-		DZA65_RS22575	0.12	-0.5
4,881,134	-		DZA65_RS22575	0.16	-1.1
4,881,134	-		DZA65_RS22575	0.16	+0.5
4,881,185	+		DZA65_RS22575	0.22	-1.3
4,881,186	-		DZA65_RS22575	0.22	+0.7
4,881,217	-		DZA65_RS22575	0.27	+1.8
4,881,268	-		DZA65_RS22575	0.33	-0.1
4,881,268	-		DZA65_RS22575	0.33	+1.1
4,881,268	-		DZA65_RS22575	0.33	-1.2
4,881,396	+		DZA65_RS22575	0.51	-2.7
4,881,397	-		DZA65_RS22575	0.51	-0.1
4,881,397	-		DZA65_RS22575	0.51	-0.7
4,881,410	+		DZA65_RS22575	0.52	+1.5
4,881,410	+		DZA65_RS22575	0.52	+0.1
4,881,462	+		DZA65_RS22575	0.59	-0.3
4,881,462	+		DZA65_RS22575	0.59	+0.7
4,881,462	+		DZA65_RS22575	0.59	+0.4
4,881,463	-		DZA65_RS22575	0.60	+1.9
4,881,463	-		DZA65_RS22575	0.60	+1.2
4,881,463	-		DZA65_RS22575	0.60	+0.5
4,881,507	+		DZA65_RS22575	0.65	-0.0
4,881,507	+		DZA65_RS22575	0.65	+1.1
4,881,507	+		DZA65_RS22575	0.65	+0.1
4,881,508	-		DZA65_RS22575	0.66	-1.2
4,881,508	-		DZA65_RS22575	0.66	+1.7
4,881,508	-		DZA65_RS22575	0.66	+0.1
4,881,508	-		DZA65_RS22575	0.66	+1.1
4,881,561	+		DZA65_RS22575	0.73	+0.5
4,881,561	+		DZA65_RS22575	0.73	-0.1
4,881,561	+		DZA65_RS22575	0.73	+0.5
4,881,561	+		DZA65_RS22575	0.73	-2.0
4,881,561	+		DZA65_RS22575	0.73	-0.5
4,881,561	+		DZA65_RS22575	0.73	+0.0
4,881,561	+		DZA65_RS22575	0.73	+0.7
4,881,562	-		DZA65_RS22575	0.73	+0.8
4,881,562	-		DZA65_RS22575	0.73	-0.2
4,881,562	-		DZA65_RS22575	0.73	-0.2
4,881,562	-		DZA65_RS22575	0.73	-0.7
4,881,562	-		DZA65_RS22575	0.73	-0.2
4,881,562	-		DZA65_RS22575	0.73	-1.0
4,881,562	-		DZA65_RS22575	0.73	+1.5
4,881,562	-		DZA65_RS22575	0.73	-0.2
4,881,562	-		DZA65_RS22575	0.73	+0.1
4,881,562	-		DZA65_RS22575	0.73	-0.7
4,881,562	-		DZA65_RS22575	0.73	-0.0
4,881,562	-		DZA65_RS22575	0.73	-1.7
4,881,621	+		DZA65_RS22575	0.81	-0.0
4,881,622	-		DZA65_RS22575	0.81	-0.3
4,881,622	-		DZA65_RS22575	0.81	+1.7
4,881,622	-		DZA65_RS22575	0.81	+0.9
4,881,622	-		DZA65_RS22575	0.81	-0.3
4,881,622	-		DZA65_RS22575	0.81	-1.2
4,881,622	-		DZA65_RS22575	0.81	+1.4
4,881,622	-		DZA65_RS22575	0.81	-1.3
4,881,685	+		DZA65_RS22575	0.89	+0.5
4,881,685	+		DZA65_RS22575	0.89	-0.8
4,881,685	+		DZA65_RS22575	0.89	-0.3
4,881,685	+		DZA65_RS22575	0.89	-1.2
4,881,686	-		DZA65_RS22575	0.89	-0.0
4,881,686	-		DZA65_RS22575	0.89	-0.2
4,881,686	-		DZA65_RS22575	0.89	-0.9
4,881,686	-		DZA65_RS22575	0.89	+0.3
4,881,690	+				+1.5
4,881,690	+				-1.2
4,881,690	+				+0.2
4,881,690	+				-0.5
4,881,690	+				+0.7
4,881,690	+				-1.2
4,881,690	+				-0.3
4,881,690	+				-1.0
4,881,690	+				+0.9
4,881,690	+				-0.8
4,881,690	+				+1.3
4,881,690	+				+0.5
4,881,690	+				+0.3
4,881,690	+				-1.8
4,881,690	+				+0.3
4,881,690	+				-1.7
4,881,690	+				+0.3
4,881,690	+				-1.0
4,881,690	+				+0.2
4,881,690	+				+1.1
4,881,690	+				+1.3
4,881,690	+				+2.5
4,881,690	+				+0.6
4,881,690	+				-1.3
4,881,690	+				+0.1
4,881,690	+				+0.3
4,881,691	-				-0.6
4,881,691	-				+0.9
4,881,691	-				+1.1
4,881,691	-				-1.3
4,881,691	-				+0.8
4,881,691	-				+0.9
4,881,691	-				-1.5
4,881,691	-				+0.2
4,881,691	-				+0.1
4,881,691	-				+0.3
4,881,691	-				+0.4
4,881,691	-				+1.9
4,881,691	-				-0.2
4,881,691	-				+0.4
4,881,691	-				+0.8
4,881,691	-				+0.6
4,881,691	-				-0.3
4,881,691	-				-0.5
4,881,692	+				-0.1
4,881,692	+				-0.7
4,881,692	+				-0.5
4,881,692	+				-0.8
4,881,692	+				+0.7
4,881,693	-				+0.1
4,881,693	-				+1.1
4,881,795	+				-0.6
4,881,796	-				+1.0
4,881,796	-				+1.6
4,881,796	-				-1.0
4,881,796	-				-0.1
4,881,799	+				-0.9
4,881,799	+				-0.2
4,881,800	-				+0.5
4,881,866	+		DZA65_RS22580	0.13	+1.0
4,881,866	+		DZA65_RS22580	0.13	-0.9
4,881,866	+		DZA65_RS22580	0.13	-0.1
4,881,866	+		DZA65_RS22580	0.13	+0.1
4,881,867	-		DZA65_RS22580	0.13	-1.2
4,882,009	+		DZA65_RS22580	0.32	+0.9
4,882,041	+		DZA65_RS22580	0.36	+1.2
4,882,042	-		DZA65_RS22580	0.36	-0.8
4,882,042	-		DZA65_RS22580	0.36	-0.1
4,882,093	+		DZA65_RS22580	0.43	-0.1
4,882,094	-		DZA65_RS22580	0.43	+1.1
4,882,130	+		DZA65_RS22580	0.48	-0.9
4,882,192	+		DZA65_RS22580	0.56	+0.1
4,882,192	+		DZA65_RS22580	0.56	+0.7
4,882,192	+		DZA65_RS22580	0.56	-0.9
4,882,192	+		DZA65_RS22580	0.56	+1.1
4,882,192	+		DZA65_RS22580	0.56	+0.9
4,882,192	+		DZA65_RS22580	0.56	-0.3
4,882,192	+		DZA65_RS22580	0.56	+0.8
4,882,192	+		DZA65_RS22580	0.56	-0.2
4,882,192	+		DZA65_RS22580	0.56	+1.7
4,882,193	-		DZA65_RS22580	0.56	-0.5
4,882,193	-		DZA65_RS22580	0.56	-1.0
4,882,193	-		DZA65_RS22580	0.56	-0.6
4,882,193	-		DZA65_RS22580	0.56	-2.6
4,882,193	-		DZA65_RS22580	0.56	+0.1
4,882,193	-		DZA65_RS22580	0.56	+1.2
4,882,260	+		DZA65_RS22580	0.65	+0.1
4,882,261	-		DZA65_RS22580	0.65	+2.1
4,882,266	+		DZA65_RS22580	0.66	+0.5
4,882,267	-		DZA65_RS22580	0.66	-0.4
4,882,279	+		DZA65_RS22580	0.68	+0.5
4,882,279	+		DZA65_RS22580	0.68	-0.2
4,882,279	+				-0.5
4,882,279	+		DZA65_RS22580	0.68	+1.9
4,882,279	+		DZA65_RS22580	0.68	-1.1
4,882,279	+		DZA65_RS22580	0.68	+0.9
4,882,279	+		DZA65_RS22580	0.68	-0.0
4,882,279	+		DZA65_RS22580	0.68	+0.7
4,882,279	+		DZA65_RS22580	0.68	+1.1
4,882,280	-		DZA65_RS22580	0.68	+0.0
4,882,280	-		DZA65_RS22580	0.68	+0.2
4,882,280	-		DZA65_RS22580	0.68	+1.1
4,882,280	-		DZA65_RS22580	0.68	+0.1
4,882,280	-		DZA65_RS22580	0.68	+0.3
4,882,280	-		DZA65_RS22580	0.68	-0.5
4,882,280	-		DZA65_RS22580	0.68	-0.5
4,882,280	-		DZA65_RS22580	0.68	-0.2
4,882,280	-		DZA65_RS22580	0.68	-0.9
4,882,281	+		DZA65_RS22580	0.68	+0.8
4,882,281	+		DZA65_RS22580	0.68	-0.6
4,882,281	+		DZA65_RS22580	0.68	-1.5
4,882,281	+		DZA65_RS22580	0.68	-0.7
4,882,281	+		DZA65_RS22580	0.68	+0.1
4,882,281	+		DZA65_RS22580	0.68	-1.7
4,882,281	+		DZA65_RS22580	0.68	-0.3
4,882,281	+		DZA65_RS22580	0.68	-1.2
4,882,281	+		DZA65_RS22580	0.68	+0.4
4,882,282	-		DZA65_RS22580	0.68	+0.1
4,882,282	-		DZA65_RS22580	0.68	+0.1
4,882,282	-		DZA65_RS22580	0.68	+0.5
4,882,282	-		DZA65_RS22580	0.68	+0.6
4,882,282	-		DZA65_RS22580	0.68	+0.3
4,882,282	-		DZA65_RS22580	0.68	-1.0
4,882,282	-		DZA65_RS22580	0.68	-0.5
4,882,282	-		DZA65_RS22580	0.68	-2.2
4,882,282	-		DZA65_RS22580	0.68	-0.7
4,882,282	-		DZA65_RS22580	0.68	+2.1
4,882,282	-		DZA65_RS22580	0.68	+0.4
4,882,282	-		DZA65_RS22580	0.68	-0.1
4,882,282	-		DZA65_RS22580	0.68	-0.1
4,882,282	-		DZA65_RS22580	0.68	+0.1
4,882,282	-		DZA65_RS22580	0.68	-0.3
4,882,282	-		DZA65_RS22580	0.68	+0.2
4,882,343	-		DZA65_RS22580	0.76	-0.4
4,882,378	+		DZA65_RS22580	0.81	+0.8
4,882,378	+		DZA65_RS22580	0.81	-0.9
4,882,378	+		DZA65_RS22580	0.81	+0.2
4,882,378	+		DZA65_RS22580	0.81	+0.7
4,882,379	-		DZA65_RS22580	0.81	-0.2
4,882,379	-		DZA65_RS22580	0.81	-1.0
4,882,379	-		DZA65_RS22580	0.81	+0.8
4,882,466	+				-1.7
4,882,466	+				-0.3
4,882,466	+				+1.3
4,882,467	-				-2.6
4,882,467	-				+0.1
4,882,467	-				-2.8
4,882,467	-				-1.1
4,882,624	+		DZA65_RS22585	0.14	-1.5
4,882,624	+		DZA65_RS22585	0.14	+0.5
4,882,624	+		DZA65_RS22585	0.14	+0.9
4,882,624	+		DZA65_RS22585	0.14	+0.5
4,882,624	+		DZA65_RS22585	0.14	+0.1
4,882,624	+		DZA65_RS22585	0.14	+0.7
4,882,624	+		DZA65_RS22585	0.14	-0.9
4,882,624	+		DZA65_RS22585	0.14	+0.6
4,882,624	+		DZA65_RS22585	0.14	+0.0
4,882,624	+		DZA65_RS22585	0.14	-0.4
4,882,624	+				+2.7
4,882,624	+		DZA65_RS22585	0.14	-0.0
4,882,624	+		DZA65_RS22585	0.14	-0.2
4,882,624	+		DZA65_RS22585	0.14	-0.3
4,882,625	-		DZA65_RS22585	0.14	-0.0
4,882,625	-		DZA65_RS22585	0.14	-0.2
4,882,625	-		DZA65_RS22585	0.14	-1.2
4,882,625	-		DZA65_RS22585	0.14	-0.5
4,882,625	-		DZA65_RS22585	0.14	+1.7
4,882,625	-		DZA65_RS22585	0.14	-0.5
4,882,625	-		DZA65_RS22585	0.14	+1.1
4,882,625	-		DZA65_RS22585	0.14	+0.4
4,882,625	-		DZA65_RS22585	0.14	+0.6
4,882,625	-		DZA65_RS22585	0.14	+0.9
4,882,625	-		DZA65_RS22585	0.14	+0.1
4,882,641	+		DZA65_RS22585	0.17	+0.7
4,882,644	+		DZA65_RS22585	0.17	+0.4
4,882,644	+		DZA65_RS22585	0.17	+0.2
4,882,645	-		DZA65_RS22585	0.17	+0.6
4,882,645	-		DZA65_RS22585	0.17	-1.9
4,882,645	-		DZA65_RS22585	0.17	-0.5
4,882,645	-		DZA65_RS22585	0.17	-0.6
4,882,645	-		DZA65_RS22585	0.17	-1.9
4,882,645	-		DZA65_RS22585	0.17	+1.1
4,882,645	-		DZA65_RS22585	0.17	-0.1
4,882,656	-		DZA65_RS22585	0.19	-1.0
4,882,788	+		DZA65_RS22585	0.39	+0.3
4,882,797	+		DZA65_RS22585	0.40	+0.1
4,882,797	+		DZA65_RS22585	0.40	+0.0
4,882,839	-		DZA65_RS22585	0.47	+0.1
4,882,907	+		DZA65_RS22585	0.57	+1.1
4,883,032	+		DZA65_RS22585	0.76	-0.9
4,883,040	+		DZA65_RS22585	0.77	+0.4
4,883,040	+		DZA65_RS22585	0.77	-0.3
4,883,104	+		DZA65_RS22585	0.86	-0.7
4,883,105	-		DZA65_RS22585	0.86	-1.9
4,883,110	+		DZA65_RS22585	0.87	-0.3
4,883,111	-		DZA65_RS22585	0.87	+0.1
4,883,118	+		DZA65_RS22585	0.88	-0.5
4,883,118	+		DZA65_RS22585	0.88	+1.0
4,883,118	+		DZA65_RS22585	0.88	+0.8
4,883,118	+		DZA65_RS22585	0.88	+0.1
4,883,119	-		DZA65_RS22585	0.89	-1.0
4,883,119	-		DZA65_RS22585	0.89	+0.3
4,883,119	-		DZA65_RS22585	0.89	-0.6
4,883,119	-		DZA65_RS22585	0.89	-0.2
4,883,119	-		DZA65_RS22585	0.89	+1.1
4,883,119	-		DZA65_RS22585	0.89	-0.3
4,883,119	-		DZA65_RS22585	0.89	+1.1
4,883,119	-		DZA65_RS22585	0.89	+0.9
4,883,119	-		DZA65_RS22585	0.89	-0.6
4,883,119	-		DZA65_RS22585	0.89	+1.1
4,883,119	-		DZA65_RS22585	0.89	+1.0
4,883,175	-				+0.1
4,883,175	-				+0.8
4,883,198	+				-0.5
4,883,198	+				-0.8
4,883,199	-				+1.1
4,883,230	+				-0.1
4,883,230	+				-1.3
4,883,231	-				+0.5
4,883,231	-				+0.7
4,883,231	-				-0.1
4,883,266	+				-0.4
4,883,266	+				-1.9
4,883,266	+				-0.1
4,883,267	-				-0.2
4,883,267	-				+0.4
4,883,285	+				+0.5
4,883,285	+				+0.1
4,883,285	+				+0.5
4,883,286	-				-0.5
4,883,286	-				-1.5
4,883,286	-				-0.1
4,883,286	-				+1.1
4,883,353	+				-0.6
4,883,354	-				-0.9
4,883,356	-				+0.5
4,883,417	+				-0.1
4,883,419	+				+0.9
4,883,419	+				-0.3
4,883,419	+				-1.0
4,883,419	+				+1.1
4,883,419	+				-0.9
4,883,419	+				+1.1
4,883,419	+				-1.6
4,883,419	+				+0.5
4,883,419	+				-0.1
4,883,419	+				-0.3
4,883,420	-				-0.3
4,883,420	-				-0.9
4,883,420	-				-1.2
4,883,420	-				+0.8
4,883,420	-				+1.1
4,883,435	+				+0.8
4,883,435	+				+0.3
4,883,436	-				-1.9
4,883,461	-				+2.1
4,883,461	-				-0.5
4,883,461	-				-0.6
4,883,464	+				-0.8
4,883,464	+				-1.3
4,883,464	+				+0.3
4,883,464	+				+0.2
4,883,464	+				-0.2
4,883,464	+				-0.3
4,883,465	-				-0.2
4,883,465	-				-0.3
4,883,465	-				-0.5
4,883,465	-				+0.6
4,883,465	-				+1.9
4,883,473	+				-0.9
4,883,473	+				-1.5