Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22165

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,792,680	-		DZA65_RS22160	0.63	-0.9
4,792,820	+		DZA65_RS22160	0.70	-0.6
4,792,820	+		DZA65_RS22160	0.70	-0.6
4,792,821	-		DZA65_RS22160	0.70	+0.5
4,792,884	-		DZA65_RS22160	0.73	-0.1
4,792,884	-		DZA65_RS22160	0.73	+1.5
4,792,884	-		DZA65_RS22160	0.73	-1.1
4,792,918	+		DZA65_RS22160	0.75	+0.5
4,792,984	+		DZA65_RS22160	0.78	-0.1
4,792,984	+		DZA65_RS22160	0.78	+1.1
4,792,984	+		DZA65_RS22160	0.78	-1.9
4,792,985	-		DZA65_RS22160	0.78	-0.6
4,792,985	-		DZA65_RS22160	0.78	-1.7
4,792,985	-		DZA65_RS22160	0.78	-0.9
4,793,145	+		DZA65_RS22160	0.86	+0.1
4,793,146	-		DZA65_RS22160	0.86	+0.1
4,793,153	+		DZA65_RS22160	0.86	-0.2
4,793,154	-		DZA65_RS22160	0.86	-1.0
4,793,154	-		DZA65_RS22160	0.86	-0.6
4,793,154	-		DZA65_RS22160	0.86	-1.5
4,793,199	+		DZA65_RS22160	0.88	+0.9
4,793,200	-		DZA65_RS22160	0.88	-1.9
4,793,431	+				+0.9
4,793,431	+				-0.9
4,793,431	+				+0.8
4,793,431	+				-0.3
4,793,431	+				+0.5
4,793,431	+				+0.7
4,793,431	+				-1.9
4,793,431	+				+1.9
4,793,432	-				-0.7
4,793,432	-				+0.1
4,793,432	-				+1.1
4,793,432	-				-0.1
4,793,432	-				+0.1
4,793,432	-				-1.5
4,793,432	-				-1.2
4,793,432	-				+1.4
4,793,494	-				+1.1
4,793,513	+				-1.8
4,793,513	+				+0.7
4,793,513	+				+0.2
4,793,513	+				-0.5
4,793,513	+				-0.4
4,793,514	-				+0.8
4,793,514	-				-0.5
4,793,514	-				+1.1
4,793,514	-				-0.1
4,793,514	-				-0.5
4,793,514	-				+0.5
4,793,514	-				-0.1
4,793,516	+				-2.2
4,793,586	+				-0.5
4,793,586	+				+0.1
4,793,587	-				-0.3
4,793,621	+				+0.4
4,793,622	-				-0.8
4,793,647	+				+1.1
4,793,647	+				-0.5
4,793,647	+				-1.0
4,793,648	-				-0.0
4,793,648	-				-1.2
4,793,648	-				+0.9
4,793,648	-				-0.1
4,793,691	+				-0.0
4,793,995	+		DZA65_RS22165	0.27	-0.5
4,793,995	+		DZA65_RS22165	0.27	+2.1
4,793,996	-		DZA65_RS22165	0.27	-0.2
4,794,100	+		DZA65_RS22165	0.34	+0.2
4,794,100	+		DZA65_RS22165	0.34	+0.1
4,794,101	-		DZA65_RS22165	0.34	+1.1
4,794,277	-		DZA65_RS22165	0.47	-0.0
4,794,287	-		DZA65_RS22165	0.48	+0.4
4,794,287	-		DZA65_RS22165	0.48	-0.1
4,794,305	+		DZA65_RS22165	0.49	+0.3
4,794,306	-		DZA65_RS22165	0.49	-2.6
4,794,318	+		DZA65_RS22165	0.50	-2.5
4,794,402	+		DZA65_RS22165	0.56	-0.8
4,794,402	+		DZA65_RS22165	0.56	+1.1
4,794,402	+		DZA65_RS22165	0.56	-0.9
4,794,402	+		DZA65_RS22165	0.56	-0.7
4,794,402	+		DZA65_RS22165	0.56	-0.9
4,794,403	-		DZA65_RS22165	0.56	-0.7
4,794,403	-		DZA65_RS22165	0.56	+0.4
4,794,403	-		DZA65_RS22165	0.56	+0.2
4,794,403	-		DZA65_RS22165	0.56	-1.1
4,794,403	-		DZA65_RS22165	0.56	+0.5
4,794,403	-		DZA65_RS22165	0.56	+1.5
4,794,405	+		DZA65_RS22165	0.56	-1.7
4,794,406	-		DZA65_RS22165	0.56	-0.3
4,794,534	+		DZA65_RS22165	0.65	-0.9
4,794,534	+		DZA65_RS22165	0.65	-0.1
4,794,534	+		DZA65_RS22165	0.65	-0.9
4,794,534	+		DZA65_RS22165	0.65	+0.8
4,794,535	-		DZA65_RS22165	0.66	-0.1
4,794,535	-		DZA65_RS22165	0.66	-0.7
4,794,535	-		DZA65_RS22165	0.66	-0.1
4,794,535	-		DZA65_RS22165	0.66	+0.1
4,794,602	+		DZA65_RS22165	0.70	-0.8
4,794,602	+		DZA65_RS22165	0.70	-0.2
4,794,602	+		DZA65_RS22165	0.70	+1.7
4,794,602	+		DZA65_RS22165	0.70	+0.1
4,794,602	+		DZA65_RS22165	0.70	+0.1
4,794,602	+		DZA65_RS22165	0.70	+0.1
4,794,669	+		DZA65_RS22165	0.75	-1.0
4,794,703	+		DZA65_RS22165	0.78	+0.1
4,794,704	-		DZA65_RS22165	0.78	-0.1
4,794,712	+		DZA65_RS22165	0.78	+0.9
4,794,712	+		DZA65_RS22165	0.78	+0.6
4,794,712	+		DZA65_RS22165	0.78	+0.5
4,794,712	+		DZA65_RS22165	0.78	-0.2
4,794,713	-		DZA65_RS22165	0.78	-0.8
4,794,713	-		DZA65_RS22165	0.78	-1.2
4,794,736	+		DZA65_RS22165	0.80	-1.2
4,794,736	+		DZA65_RS22165	0.80	-1.1
4,794,736	+		DZA65_RS22165	0.80	-0.7
4,794,737	-		DZA65_RS22165	0.80	+1.1
4,794,737	-		DZA65_RS22165	0.80	+0.0
4,794,737	-		DZA65_RS22165	0.80	-0.1
4,794,812	+		DZA65_RS22165	0.85	+0.4
4,794,812	+		DZA65_RS22165	0.85	+0.1
4,794,812	+		DZA65_RS22165	0.85	-0.5
4,794,812	+		DZA65_RS22165	0.85	-2.6
4,794,813	-		DZA65_RS22165	0.86	-0.2
4,794,813	-		DZA65_RS22165	0.86	-0.5
4,794,813	-		DZA65_RS22165	0.86	-0.8
4,794,813	-		DZA65_RS22165	0.86	-0.1
4,794,813	-		DZA65_RS22165	0.86	+0.1
4,794,813	-		DZA65_RS22165	0.86	+0.1
4,794,813	-		DZA65_RS22165	0.86	+1.3
4,794,965	+				-1.7
4,795,012	-				-0.7
4,795,040	+				+0.9
4,795,040	+				+0.2
4,795,040	+				+0.3
4,795,040	+				+0.0
4,795,040	+				+0.5
4,795,040	+				+0.4
4,795,040	+				+0.5
4,795,041	-				-1.3
4,795,041	-				+0.4
4,795,041	-				-0.3
4,795,041	-				+0.1
4,795,041	-				-2.2
4,795,047	+				-1.2
4,795,047	+				+0.5
4,795,047	+				-0.9
4,795,047	+				-0.6
4,795,047	+				+1.1
4,795,048	-				+0.1
4,795,048	-				-0.2
4,795,050	+				+0.6
4,795,051	-				-0.2
4,795,051	-				-1.9
4,795,051	-				+0.4
4,795,068	+				+0.3
4,795,068	+				-0.5
4,795,068	+				-0.2
4,795,068	+				+0.5
4,795,069	-				+0.4
4,795,069	-				-0.5
4,795,069	-				-1.3
4,795,069	-				-0.1
4,795,069	-				-1.5
4,795,077	+				-1.5
4,795,077	+				-2.0
4,795,078	-				-0.0
4,795,078	-				-0.1
4,795,125	-				-1.5
4,795,125	-				+0.1
4,795,125	-				-1.2
4,795,125	-				-1.2
4,795,125	-				+0.7
4,795,132	+				-1.3
4,795,132	+				-0.5
4,795,132	+				+0.0
4,795,133	-				+2.3
4,795,133	-				-0.5
4,795,133	-				+0.5
4,795,170	+				-0.2
4,795,170	+				-2.0
4,795,180	+				-0.2
4,795,180	+				-0.5
4,795,181	-				+0.0
4,795,181	-				+0.4
4,795,190	-				-1.2
4,795,191	+				-0.7
4,795,191	+				+2.4
4,795,191	+				-0.2
4,795,191	+				-1.8
4,795,191	+				-0.3
4,795,191	+				+0.5
4,795,192	-				-0.0
4,795,192	-				-0.1
4,795,192	-				+0.5
4,795,192	-				-0.2
4,795,204	+				+0.3
4,795,204	+				-2.3
4,795,204	+				+0.8
4,795,204	+				+1.1
4,795,205	-				-0.9
4,795,205	-				+0.7
4,795,205	-				-1.2
4,795,205	-				-0.2
4,795,208	+				-0.1
4,795,208	+				+0.4
4,795,208	+				+0.1
4,795,208	+				+1.1
4,795,208	+				-1.3
4,795,208	+				+0.7
4,795,209	-				+1.0
4,795,209	-				+1.6
4,795,209	-				+0.9
4,795,209	-				+1.1
4,795,220	+				-0.0
4,795,220	+				+1.1
4,795,220	+				-0.3
4,795,220	+				-1.2
4,795,220	+				+1.1
4,795,221	-				-0.6
4,795,221	-				-0.8
4,795,221	-				+0.1
4,795,221	-				-0.3
4,795,221	-				-1.2
4,795,225	+				+2.1
4,795,225	+				+1.3
4,795,225	+				-0.9
4,795,225	+				-0.1
4,795,226	-				-0.1
4,795,245	+				-2.0
4,795,245	+				-0.2
4,795,246	-				-0.4
4,795,256	+				-0.2
4,795,256	+				-0.3
4,795,289	+				-0.3
4,795,289	+				-0.8
4,795,289	+				-0.6
4,795,289	+				-0.5
4,795,290	-				-1.1
4,795,290	-				+0.8
4,795,290	-				+0.1
4,795,290	-				-1.0
4,795,290	-				+2.1
4,795,290	-				-1.5
4,795,333	-				+0.1
4,795,361	+				-2.5
4,795,361	+				+0.6
4,795,361	+				+0.1
4,795,361	+				-0.3
4,795,361	+				+1.1
4,795,361	+				+0.1
4,795,362	-				+1.5
4,795,362	-				-0.5
4,795,362	-				-1.5
4,795,362	-				+0.7
4,795,362	-				-0.0
4,795,362	-				-1.0
4,795,362	-				+0.5
4,795,365	+				+0.5
4,795,366	-				+0.3
4,795,366	-				-1.3
4,795,366	-				-0.2
4,795,366	-				+0.1
4,795,366	-				-1.5
4,795,366	-				-1.5
4,795,396	+				-0.7
4,795,396	+				+1.0
4,795,396	+				-1.0
4,795,396	+				+0.6
4,795,397	-				-2.0
4,795,397	-				-0.1
4,795,397	-				-0.2
4,795,397	-				-0.2
4,795,397	-				-0.9
4,795,397	-				-1.5
4,795,397	-				-0.1
4,795,397	-				+0.1
4,795,420	+				+0.3
4,795,421	-				+0.0
4,795,421	-				-0.9
4,795,639	+		DZA65_RS22175	0.20	+0.4
4,795,639	+		DZA65_RS22175	0.20	+0.1
4,795,639	+		DZA65_RS22175	0.20	-0.9
4,795,639	+		DZA65_RS22175	0.20	-0.1
4,795,639	+		DZA65_RS22175	0.20	+0.7
4,795,639	+		DZA65_RS22175	0.20	-0.3
4,795,639	+		DZA65_RS22175	0.20	-0.2
4,795,640	-		DZA65_RS22175	0.20	-1.4
4,795,640	-		DZA65_RS22175	0.20	-0.2
4,795,640	-		DZA65_RS22175	0.20	-0.6
4,795,640	-		DZA65_RS22175	0.20	+0.4
4,795,728	+		DZA65_RS22175	0.25	+3.1
4,795,728	+		DZA65_RS22175	0.25	+1.6
4,795,728	+		DZA65_RS22175	0.25	+0.1
4,795,729	-		DZA65_RS22175	0.25	+0.8
4,795,729	-		DZA65_RS22175	0.25	-1.2
4,795,738	+		DZA65_RS22175	0.25	+0.5
4,795,738	+		DZA65_RS22175	0.25	-1.5
4,795,741	+		DZA65_RS22175	0.26	-0.2
4,795,741	+		DZA65_RS22175	0.26	+0.1
4,795,742	-		DZA65_RS22175	0.26	+1.2
4,795,742	-		DZA65_RS22175	0.26	-0.6
4,795,742	-		DZA65_RS22175	0.26	+0.1
4,795,778	-		DZA65_RS22175	0.28	+0.8
4,795,842	+		DZA65_RS22175	0.31	+0.5
4,795,842	+		DZA65_RS22175	0.31	-1.2
4,795,842	+		DZA65_RS22175	0.31	-0.0
4,795,842	+		DZA65_RS22175	0.31	-0.7
4,795,842	+		DZA65_RS22175	0.31	-0.7
4,795,843	-		DZA65_RS22175	0.31	-0.5
4,795,843	-		DZA65_RS22175	0.31	-1.7
4,795,843	-		DZA65_RS22175	0.31	-1.7
4,795,843	-		DZA65_RS22175	0.31	+0.7
4,795,843	-		DZA65_RS22175	0.31	-1.7
4,795,843	-		DZA65_RS22175	0.31	+0.9
4,795,843	-		DZA65_RS22175	0.31	-0.1
4,795,845	+		DZA65_RS22175	0.32	-0.2
4,795,845	+		DZA65_RS22175	0.32	-0.9
4,795,845	+		DZA65_RS22175	0.32	+0.6
4,795,845	+		DZA65_RS22175	0.32	-0.6
4,795,845	+		DZA65_RS22175	0.32	+2.9
4,795,845	+		DZA65_RS22175	0.32	+0.4
4,795,845	+		DZA65_RS22175	0.32	-0.0
4,795,845	+		DZA65_RS22175	0.32	+1.3
4,795,846	-		DZA65_RS22175	0.32	-0.9
4,795,846	-		DZA65_RS22175	0.32	-1.7
4,795,846	-		DZA65_RS22175	0.32	-1.5
4,795,846	-		DZA65_RS22175	0.32	+0.6
4,795,846	-		DZA65_RS22175	0.32	+0.5
4,795,846	-		DZA65_RS22175	0.32	+0.3
4,795,846	-		DZA65_RS22175	0.32	+0.1
4,795,846	-		DZA65_RS22175	0.32	+0.1
4,795,848	+		DZA65_RS22175	0.32	+0.1
4,795,848	+		DZA65_RS22175	0.32	+0.1
4,795,848	+		DZA65_RS22175	0.32	+0.4
4,795,848	+		DZA65_RS22175	0.32	-1.2
4,795,848	+		DZA65_RS22175	0.32	-1.2
4,795,848	+		DZA65_RS22175	0.32	-0.2
4,795,848	+		DZA65_RS22175	0.32	+0.5
4,795,848	+		DZA65_RS22175	0.32	-1.2
4,795,848	+		DZA65_RS22175	0.32	-0.5
4,795,849	-		DZA65_RS22175	0.32	-0.2
4,795,849	-		DZA65_RS22175	0.32	-0.6
4,795,849	-		DZA65_RS22175	0.32	+0.7
4,795,849	-		DZA65_RS22175	0.32	+0.1
4,795,849	-		DZA65_RS22175	0.32	-0.7
4,795,849	-		DZA65_RS22175	0.32	+0.1
4,795,849	-		DZA65_RS22175	0.32	-0.5
4,795,849	-		DZA65_RS22175	0.32	-1.5
4,795,964	-		DZA65_RS22175	0.38	-0.7