Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22160

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,790,523	-				-1.5
4,790,528	+				-0.7
4,790,576	+				+0.7
4,790,661	+				+2.5
4,790,669	+				-0.1
4,790,669	+				+1.0
4,790,670	-				-0.2
4,790,670	-				+0.0
4,790,685	+				+0.3
4,790,685	+				+0.1
4,790,685	+				-1.0
4,790,686	-				-2.0
4,790,686	-				-0.2
4,790,687	+				-0.9
4,790,687	+				-0.2
4,790,687	+				+1.5
4,790,687	+				+0.0
4,790,687	+				-1.5
4,790,687	+				+0.5
4,790,687	+				-0.2
4,790,688	-				+0.1
4,790,688	-				-0.1
4,790,688	-				+0.9
4,790,688	-				-1.0
4,790,688	-				+0.3
4,790,688	-				-0.5
4,790,688	-				+1.0
4,790,688	-				-0.9
4,790,693	+				-2.2
4,790,694	-				+2.1
4,790,694	-				-0.5
4,790,694	-				-1.9
4,790,708	+				-0.1
4,790,709	-				-0.6
4,790,709	-				-0.9
4,790,734	+				-1.1
4,790,734	+				+0.3
4,790,734	+				+2.7
4,790,734	+				-0.3
4,790,734	+				+0.4
4,790,735	-				-0.6
4,790,735	-				+0.4
4,790,753	+		DZA65_RS22155	0.12	+0.2
4,790,753	+		DZA65_RS22155	0.12	-1.8
4,790,753	+		DZA65_RS22155	0.12	-1.9
4,790,753	+		DZA65_RS22155	0.12	+0.4
4,790,753	+		DZA65_RS22155	0.12	+0.3
4,790,753	+		DZA65_RS22155	0.12	+0.6
4,790,753	+		DZA65_RS22155	0.12	+0.5
4,790,753	+		DZA65_RS22155	0.12	-1.2
4,790,754	-		DZA65_RS22155	0.12	-1.0
4,790,767	+		DZA65_RS22155	0.14	-0.3
4,790,767	+		DZA65_RS22155	0.14	+1.7
4,790,997	+		DZA65_RS22155	0.47	-0.5
4,790,997	+		DZA65_RS22155	0.47	+0.1
4,790,997	+		DZA65_RS22155	0.47	-0.2
4,790,997	+		DZA65_RS22155	0.47	+0.1
4,790,998	-		DZA65_RS22155	0.47	-0.5
4,790,998	-		DZA65_RS22155	0.47	-0.1
4,790,998	-		DZA65_RS22155	0.47	+1.1
4,791,008	+		DZA65_RS22155	0.49	+0.1
4,791,008	+		DZA65_RS22155	0.49	-0.9
4,791,180	+		DZA65_RS22155	0.74	+0.4
4,791,180	+		DZA65_RS22155	0.74	+0.1
4,791,181	-		DZA65_RS22155	0.74	-1.5
4,791,181	-		DZA65_RS22155	0.74	+0.1
4,791,181	-		DZA65_RS22155	0.74	+0.4
4,791,193	-		DZA65_RS22155	0.75	+0.1
4,791,302	+				+0.1
4,791,383	-				-0.8
4,791,394	-				+0.4
4,791,468	+				+2.1
4,791,468	+				-0.9
4,791,469	-				-0.2
4,791,469	-				+2.6
4,791,486	+				-1.2
4,791,487	-				-1.1
4,791,492	-				+0.5
4,791,512	+				-0.7
4,791,512	+				-1.5
4,791,520	+				+0.5
4,791,542	+				-1.5
4,791,542	+				+0.7
4,791,542	+				+0.9
4,791,542	+				+1.1
4,791,542	+				-0.5
4,791,542	+				+0.7
4,791,543	-				+1.1
4,791,543	-				+0.8
4,791,543	-				+0.1
4,791,543	-				-0.2
4,791,543	-				-1.9
4,791,543	-				+2.1
4,791,552	+				-1.5
4,791,552	+				-0.6
4,791,552	+				-0.6
4,791,553	-				-0.9
4,791,553	-				-0.5
4,791,553	-				+2.7
4,791,553	-				+0.1
4,791,553	-				+0.5
4,791,553	-				+0.3
4,791,553	-				+1.4
4,791,553	-				-0.2
4,791,553	-				+0.4
4,791,553	-				-0.7
4,791,580	+		DZA65_RS22160	0.10	-1.2
4,791,580	+		DZA65_RS22160	0.10	+0.1
4,791,581	-		DZA65_RS22160	0.11	-0.1
4,791,581	-		DZA65_RS22160	0.11	-0.2
4,791,581	-		DZA65_RS22160	0.11	-1.5
4,791,581	-		DZA65_RS22160	0.11	+1.5
4,791,581	-		DZA65_RS22160	0.11	+0.0
4,791,653	-		DZA65_RS22160	0.14	+1.1
4,791,653	-		DZA65_RS22160	0.14	-1.3
4,791,653	-		DZA65_RS22160	0.14	-0.9
4,791,707	+		DZA65_RS22160	0.17	-0.9
4,791,717	+		DZA65_RS22160	0.17	-1.9
4,791,718	-		DZA65_RS22160	0.17	-1.5
4,791,718	-		DZA65_RS22160	0.17	-0.1
4,791,815	+		DZA65_RS22160	0.22	+0.9
4,791,844	+		DZA65_RS22160	0.23	+0.1
4,791,845	-		DZA65_RS22160	0.23	-0.5
4,791,882	+		DZA65_RS22160	0.25	-1.2
4,791,882	+		DZA65_RS22160	0.25	+0.3
4,791,882	+		DZA65_RS22160	0.25	-0.8
4,791,882	+		DZA65_RS22160	0.25	+0.5
4,791,882	+		DZA65_RS22160	0.25	-0.6
4,791,882	+		DZA65_RS22160	0.25	+1.1
4,791,883	-		DZA65_RS22160	0.25	-0.7
4,791,883	-		DZA65_RS22160	0.25	+0.6
4,791,883	-		DZA65_RS22160	0.25	+0.1
4,791,883	-		DZA65_RS22160	0.25	-1.5
4,791,883	-		DZA65_RS22160	0.25	-0.2
4,791,883	-		DZA65_RS22160	0.25	+0.4
4,791,886	+		DZA65_RS22160	0.25	-0.5
4,791,887	-		DZA65_RS22160	0.25	-1.5
4,792,066	+		DZA65_RS22160	0.34	-2.6
4,792,066	+		DZA65_RS22160	0.34	+0.4
4,792,066	+		DZA65_RS22160	0.34	-1.2
4,792,066	+		DZA65_RS22160	0.34	+1.5
4,792,066	+		DZA65_RS22160	0.34	-0.3
4,792,067	-		DZA65_RS22160	0.34	+0.1
4,792,067	-		DZA65_RS22160	0.34	+0.7
4,792,067	-		DZA65_RS22160	0.34	+1.5
4,792,210	+		DZA65_RS22160	0.41	+2.0
4,792,211	-		DZA65_RS22160	0.41	-0.9
4,792,211	-		DZA65_RS22160	0.41	-0.6
4,792,476	+		DZA65_RS22160	0.54	+1.7
4,792,476	+		DZA65_RS22160	0.54	-0.5
4,792,477	-		DZA65_RS22160	0.54	+0.1
4,792,501	+		DZA65_RS22160	0.55	-0.5
4,792,501	+		DZA65_RS22160	0.55	-1.0
4,792,501	+		DZA65_RS22160	0.55	-1.2
4,792,501	+		DZA65_RS22160	0.55	-2.2
4,792,501	+		DZA65_RS22160	0.55	+0.1
4,792,502	-		DZA65_RS22160	0.55	-2.2
4,792,502	-		DZA65_RS22160	0.55	-0.9
4,792,502	-		DZA65_RS22160	0.55	-1.7
4,792,680	-		DZA65_RS22160	0.63	-0.9
4,792,820	+		DZA65_RS22160	0.70	-0.6
4,792,820	+		DZA65_RS22160	0.70	-0.6
4,792,821	-		DZA65_RS22160	0.70	+0.5
4,792,884	-		DZA65_RS22160	0.73	-0.1
4,792,884	-		DZA65_RS22160	0.73	+1.5
4,792,884	-		DZA65_RS22160	0.73	-1.1
4,792,918	+		DZA65_RS22160	0.75	+0.5
4,792,984	+		DZA65_RS22160	0.78	-0.1
4,792,984	+		DZA65_RS22160	0.78	+1.1
4,792,984	+		DZA65_RS22160	0.78	-1.9
4,792,985	-		DZA65_RS22160	0.78	-0.6
4,792,985	-		DZA65_RS22160	0.78	-1.7
4,792,985	-		DZA65_RS22160	0.78	-0.9
4,793,145	+		DZA65_RS22160	0.86	+0.1
4,793,146	-		DZA65_RS22160	0.86	+0.1
4,793,153	+		DZA65_RS22160	0.86	-0.2
4,793,154	-		DZA65_RS22160	0.86	-1.0
4,793,154	-		DZA65_RS22160	0.86	-0.6
4,793,154	-		DZA65_RS22160	0.86	-1.5
4,793,199	+		DZA65_RS22160	0.88	+0.9
4,793,200	-		DZA65_RS22160	0.88	-1.9
4,793,431	+				+0.9
4,793,431	+				-0.9
4,793,431	+				+0.8
4,793,431	+				-0.3
4,793,431	+				+0.5
4,793,431	+				+0.7
4,793,431	+				-1.9
4,793,431	+				+1.9
4,793,432	-				-0.7
4,793,432	-				+0.1
4,793,432	-				+1.1
4,793,432	-				-0.1
4,793,432	-				+0.1
4,793,432	-				-1.5
4,793,432	-				-1.2
4,793,432	-				+1.4
4,793,494	-				+1.1
4,793,513	+				-1.8
4,793,513	+				+0.7
4,793,513	+				+0.2
4,793,513	+				-0.5
4,793,513	+				-0.4
4,793,514	-				+0.8
4,793,514	-				-0.5
4,793,514	-				+1.1
4,793,514	-				-0.1
4,793,514	-				-0.5
4,793,514	-				+0.5
4,793,514	-				-0.1
4,793,516	+				-2.2
4,793,586	+				-0.5
4,793,586	+				+0.1
4,793,587	-				-0.3
4,793,621	+				+0.4
4,793,622	-				-0.8
4,793,647	+				+1.1
4,793,647	+				-0.5
4,793,647	+				-1.0
4,793,648	-				-0.0
4,793,648	-				-1.2
4,793,648	-				+0.9
4,793,648	-				-0.1
4,793,691	+				-0.0
4,793,995	+		DZA65_RS22165	0.27	-0.5
4,793,995	+		DZA65_RS22165	0.27	+2.1
4,793,996	-		DZA65_RS22165	0.27	-0.2
4,794,100	+		DZA65_RS22165	0.34	+0.2
4,794,100	+		DZA65_RS22165	0.34	+0.1
4,794,101	-		DZA65_RS22165	0.34	+1.1
4,794,277	-		DZA65_RS22165	0.47	-0.0
4,794,287	-		DZA65_RS22165	0.48	+0.4
4,794,287	-		DZA65_RS22165	0.48	-0.1
4,794,305	+		DZA65_RS22165	0.49	+0.3
4,794,306	-		DZA65_RS22165	0.49	-2.6
4,794,318	+		DZA65_RS22165	0.50	-2.5
4,794,402	+		DZA65_RS22165	0.56	-0.8
4,794,402	+		DZA65_RS22165	0.56	+1.1
4,794,402	+		DZA65_RS22165	0.56	-0.9
4,794,402	+		DZA65_RS22165	0.56	-0.7
4,794,402	+		DZA65_RS22165	0.56	-0.9
4,794,403	-		DZA65_RS22165	0.56	-0.7
4,794,403	-		DZA65_RS22165	0.56	+0.4
4,794,403	-		DZA65_RS22165	0.56	+0.2
4,794,403	-		DZA65_RS22165	0.56	-1.1
4,794,403	-		DZA65_RS22165	0.56	+0.5
4,794,403	-		DZA65_RS22165	0.56	+1.5
4,794,405	+		DZA65_RS22165	0.56	-1.7
4,794,406	-		DZA65_RS22165	0.56	-0.3