Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22060

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,769,064	+		DZA65_RS22055	0.21	-0.5
4,769,064	+		DZA65_RS22055	0.21	-1.2
4,769,064	+		DZA65_RS22055	0.21	-0.8
4,769,065	-		DZA65_RS22055	0.21	+1.7
4,769,065	-		DZA65_RS22055	0.21	-0.4
4,769,065	-		DZA65_RS22055	0.21	-0.4
4,769,065	-		DZA65_RS22055	0.21	-0.5
4,769,065	-		DZA65_RS22055	0.21	+0.5
4,769,065	-		DZA65_RS22055	0.21	-1.2
4,769,079	+		DZA65_RS22055	0.22	-0.5
4,769,079	+		DZA65_RS22055	0.22	+2.4
4,769,079	+		DZA65_RS22055	0.22	-0.5
4,769,079	+		DZA65_RS22055	0.22	-0.5
4,769,079	+		DZA65_RS22055	0.22	+0.1
4,769,080	-		DZA65_RS22055	0.22	-0.5
4,769,080	-		DZA65_RS22055	0.22	-0.5
4,769,080	-		DZA65_RS22055	0.22	-1.8
4,769,080	-		DZA65_RS22055	0.22	+1.5
4,769,080	-		DZA65_RS22055	0.22	-1.0
4,769,080	-		DZA65_RS22055	0.22	-0.8
4,769,088	+		DZA65_RS22055	0.23	-0.9
4,769,089	-		DZA65_RS22055	0.23	+1.7
4,769,089	-		DZA65_RS22055	0.23	-0.8
4,769,104	+		DZA65_RS22055	0.24	-1.5
4,769,118	+		DZA65_RS22055	0.26	-0.5
4,769,118	+		DZA65_RS22055	0.26	-0.5
4,769,119	-		DZA65_RS22055	0.26	-0.5
4,769,187	-		DZA65_RS22055	0.32	-1.6
4,769,457	+		DZA65_RS22055	0.56	+0.5
4,769,458	-		DZA65_RS22055	0.56	+0.5
4,769,458	-		DZA65_RS22055	0.56	+0.3
4,769,463	+		DZA65_RS22055	0.57	+0.5
4,769,463	+		DZA65_RS22055	0.57	+1.7
4,769,463	+		DZA65_RS22055	0.57	-0.9
4,769,463	+		DZA65_RS22055	0.57	-1.4
4,769,463	+		DZA65_RS22055	0.57	-1.2
4,769,463	+		DZA65_RS22055	0.57	-1.5
4,769,463	+		DZA65_RS22055	0.57	-0.2
4,769,463	+		DZA65_RS22055	0.57	-1.5
4,769,463	+		DZA65_RS22055	0.57	+0.5
4,769,463	+		DZA65_RS22055	0.57	-0.7
4,769,463	+		DZA65_RS22055	0.57	-1.2
4,769,463	+		DZA65_RS22055	0.57	+0.1
4,769,463	+		DZA65_RS22055	0.57	+0.3
4,769,463	+		DZA65_RS22055	0.57	-2.0
4,769,463	+		DZA65_RS22055	0.57	-0.6
4,769,463	+		DZA65_RS22055	0.57	+0.7
4,769,464	-		DZA65_RS22055	0.57	+0.1
4,769,464	-		DZA65_RS22055	0.57	+0.5
4,769,464	-		DZA65_RS22055	0.57	+2.1
4,769,464	-		DZA65_RS22055	0.57	-0.5
4,769,464	-		DZA65_RS22055	0.57	-2.1
4,769,464	-		DZA65_RS22055	0.57	+0.2
4,769,464	-		DZA65_RS22055	0.57	-1.7
4,769,464	-		DZA65_RS22055	0.57	-1.3
4,769,464	-		DZA65_RS22055	0.57	-1.3
4,769,464	-		DZA65_RS22055	0.57	+0.1
4,769,464	-		DZA65_RS22055	0.57	+1.8
4,769,464	-		DZA65_RS22055	0.57	+0.7
4,769,464	-		DZA65_RS22055	0.57	-1.7
4,769,464	-		DZA65_RS22055	0.57	-0.2
4,769,464	-		DZA65_RS22055	0.57	-0.9
4,769,464	-		DZA65_RS22055	0.57	+0.0
4,769,464	-		DZA65_RS22055	0.57	-0.0
4,769,464	-		DZA65_RS22055	0.57	-0.5
4,769,464	-		DZA65_RS22055	0.57	+0.1
4,769,464	-		DZA65_RS22055	0.57	+0.8
4,769,464	-		DZA65_RS22055	0.57	-0.1
4,769,464	-		DZA65_RS22055	0.57	+0.4
4,769,464	-		DZA65_RS22055	0.57	-0.8
4,769,464	-		DZA65_RS22055	0.57	+0.5
4,769,464	-		DZA65_RS22055	0.57	-0.5
4,769,464	-		DZA65_RS22055	0.57	-0.3
4,769,464	-		DZA65_RS22055	0.57	-0.5
4,769,592	+		DZA65_RS22055	0.68	+1.1
4,769,592	+		DZA65_RS22055	0.68	-1.5
4,769,592	+		DZA65_RS22055	0.68	-1.2
4,769,592	+		DZA65_RS22055	0.68	+0.1
4,769,593	-		DZA65_RS22055	0.69	+0.1
4,769,593	-		DZA65_RS22055	0.69	+1.3
4,769,713	-		DZA65_RS22055	0.79	+0.1
4,769,724	+		DZA65_RS22055	0.80	+1.4
4,769,724	+		DZA65_RS22055	0.80	+0.0
4,769,724	+		DZA65_RS22055	0.80	-1.0
4,769,724	+		DZA65_RS22055	0.80	+0.8
4,769,724	+		DZA65_RS22055	0.80	-0.3
4,769,724	+		DZA65_RS22055	0.80	-2.0
4,769,725	-		DZA65_RS22055	0.81	-0.9
4,769,725	-		DZA65_RS22055	0.81	-0.4
4,769,725	-		DZA65_RS22055	0.81	-2.6
4,769,726	+		DZA65_RS22055	0.81	+0.6
4,769,726	+		DZA65_RS22055	0.81	+0.5
4,769,726	+		DZA65_RS22055	0.81	+0.5
4,769,726	+		DZA65_RS22055	0.81	-0.9
4,769,727	-		DZA65_RS22055	0.81	+0.5
4,769,760	+		DZA65_RS22055	0.84	+1.5
4,769,858	-				-0.1
4,769,894	+				+1.1
4,769,894	+				+0.4
4,769,895	-				-0.7
4,769,895	-				+0.2
4,769,895	-				+1.6
4,769,982	-				-0.9
4,770,003	+				+0.4
4,770,003	+				-0.2
4,770,003	+				-1.2
4,770,003	+				-0.1
4,770,003	+				+0.6
4,770,004	-				-1.7
4,770,004	-				+1.1
4,770,004	-				+1.1
4,770,004	-				-0.9
4,770,004	-				+0.2
4,770,004	-				-0.5
4,770,004	-				-0.3
4,770,004	-				-1.0
4,770,005	+				+0.9
4,770,005	+				+0.1
4,770,005	+				+0.9
4,770,005	+				+2.1
4,770,005	+				-0.3
4,770,005	+				-0.7
4,770,005	+				+0.2
4,770,005	+				+1.1
4,770,005	+				+1.3
4,770,005	+				-1.7
4,770,005	+				+3.1
4,770,006	-				+0.2
4,770,006	-				+1.3
4,770,006	-				+1.9
4,770,006	-				-1.0
4,770,006	-				+0.1
4,770,006	-				-0.2
4,770,006	-				+0.6
4,770,006	-				-0.7
4,770,006	-				-0.8
4,770,006	-				-1.3
4,770,006	-				-1.0
4,770,006	-				-0.5
4,770,054	+		DZA65_RS22060	0.44	+0.4
4,770,055	-		DZA65_RS22060	0.45	+0.8
4,770,055	-		DZA65_RS22060	0.45	+2.7
4,770,055	-		DZA65_RS22060	0.45	-1.0
4,770,069	+		DZA65_RS22060	0.56	-0.7
4,770,069	+		DZA65_RS22060	0.56	-0.9
4,770,084	+				+0.7
4,770,085	-				-0.6
4,770,085	-				+0.7
4,770,085	-				-1.3
4,770,085	-				-0.4
4,770,160	+		DZA65_RS22065	0.27	-0.5
4,770,160	+		DZA65_RS22065	0.27	+0.1
4,770,160	+		DZA65_RS22065	0.27	-0.3
4,770,160	+		DZA65_RS22065	0.27	+0.4
4,770,160	+		DZA65_RS22065	0.27	-1.6
4,770,160	+		DZA65_RS22065	0.27	+0.8
4,770,160	+		DZA65_RS22065	0.27	-0.7
4,770,160	+		DZA65_RS22065	0.27	+1.1
4,770,160	+		DZA65_RS22065	0.27	+1.7
4,770,160	+		DZA65_RS22065	0.27	-0.9
4,770,161	-		DZA65_RS22065	0.28	-0.0
4,770,161	-		DZA65_RS22065	0.28	+0.8
4,770,161	-		DZA65_RS22065	0.28	-0.5
4,770,161	-		DZA65_RS22065	0.28	+1.9
4,770,161	-		DZA65_RS22065	0.28	-2.5
4,770,161	-		DZA65_RS22065	0.28	+1.3
4,770,161	-		DZA65_RS22065	0.28	-1.3
4,770,161	-		DZA65_RS22065	0.28	+1.1
4,770,188	+		DZA65_RS22065	0.37	+0.3
4,770,188	+		DZA65_RS22065	0.37	+0.4
4,770,189	-		DZA65_RS22065	0.38	-0.4
4,770,189	-		DZA65_RS22065	0.38	+0.8
4,770,189	-		DZA65_RS22065	0.38	-1.5
4,770,189	-		DZA65_RS22065	0.38	+0.4
4,770,189	-		DZA65_RS22065	0.38	+1.8
4,770,189	-		DZA65_RS22065	0.38	+1.0
4,770,212	+		DZA65_RS22065	0.46	-1.9
4,770,212	+		DZA65_RS22065	0.46	-1.1
4,770,212	+		DZA65_RS22065	0.46	-0.2
4,770,212	+		DZA65_RS22065	0.46	+0.9
4,770,213	-		DZA65_RS22065	0.46	+0.3
4,770,213	-		DZA65_RS22065	0.46	+0.7
4,770,222	+		DZA65_RS22065	0.49	+0.6
4,770,222	+		DZA65_RS22065	0.49	-2.3
4,770,222	+		DZA65_RS22065	0.49	+1.1
4,770,223	-		DZA65_RS22065	0.50	-2.0
4,770,223	-		DZA65_RS22065	0.50	-0.3
4,770,223	-		DZA65_RS22065	0.50	+0.4
4,770,266	-		DZA65_RS22065	0.65	-0.5
4,770,315	-		DZA65_RS22065	0.82	-1.9
4,770,357	-				+0.1
4,770,357	-				-1.2
4,770,357	-				-0.2
4,770,424	-				-0.7
4,770,435	-				+0.5
4,770,435	-				-0.1
4,770,456	-				+0.1
4,770,468	+				+0.3
4,770,468	+				+0.4
4,770,487	+				-1.1
4,770,488	-				+0.1
4,770,494	-				+0.5
4,770,500	-				+0.5
4,770,523	+				-0.4
4,770,524	-				+0.5
4,770,524	-				-1.9
4,770,576	+				-0.2
4,770,576	+				+0.5
4,770,576	+				-0.8
4,770,577	-				-1.0
4,770,577	-				+3.4
4,770,618	+				-1.2
4,770,618	+				-0.9
4,770,618	+				-0.5
4,770,618	+				-0.6
4,770,618	+				+1.1
4,770,618	+				+0.5
4,770,618	+				+0.4
4,770,619	-				+1.1
4,770,619	-				-0.6
4,770,619	-				+3.9
4,770,619	-				+0.4
4,770,619	-				-0.5
4,770,619	-				+0.5
4,770,619	-				-0.1
4,770,619	-				+0.9
4,770,626	+				+0.4
4,770,626	+				+0.5
4,770,626	+				+0.3
4,770,626	+				-1.2
4,770,626	+				-1.0
4,770,626	+				+0.9
4,770,626	+				+0.4
4,770,626	+				-1.5
4,770,626	+				-0.5
4,770,627	-				+2.1
4,770,717	+				-0.9
4,770,717	+				-1.0
4,770,717	+				-0.9
4,770,717	+				+0.1
4,770,717	+				+1.6
4,770,717	+				-0.5
4,770,717	+				-0.0
4,770,717	+				-0.7
4,770,717	+				+0.5
4,770,717	+				-1.7
4,770,717	+				-0.3
4,770,717	+				+1.9
4,770,717	+				-1.7
4,770,718	-				-0.7
4,770,718	-				+0.7
4,770,718	-				-0.1
4,770,718	-				-1.0
4,770,718	-				-0.1
4,770,718	-				-0.5
4,770,718	-				-0.5
4,770,718	-				+0.1
4,770,718	-				-0.9
4,770,718	-				+0.5
4,770,718	-				-0.1
4,770,718	-				-0.5
4,770,718	-				+0.8
4,770,719	+				+0.3
4,770,719	+				-1.0
4,770,719	+				+0.8
4,770,719	+				-0.6
4,770,719	+				-1.0
4,770,719	+				+0.1
4,770,719	+				+0.4
4,770,719	+				+0.2
4,770,719	+				+0.3
4,770,719	+				+2.6
4,770,720	-				-1.9
4,770,720	-				+0.9
4,770,720	-				+0.8
4,770,720	-				-0.7
4,770,720	-				+0.1
4,770,720	-				-2.7
4,770,720	-				-0.5
4,770,720	-				+0.6
4,770,721	+				-1.9
4,770,721	+				-1.4
4,770,721	+				+0.6
4,770,721	+				-0.2
4,770,721	+				+1.1
4,770,721	+				+0.6
4,770,721	+				+0.3
4,770,721	+				+0.3
4,770,721	+				-1.0
4,770,721	+				-1.5
4,770,721	+				+1.1
4,770,721	+				+0.0
4,770,721	+				-1.2
4,770,721	+				-3.7
4,770,721	+				+0.8
4,770,721	+				-1.2
4,770,722	-				-1.2
4,770,722	-				+0.1
4,770,722	-				+0.9
4,770,722	-				+0.4
4,770,722	-				-0.1
4,770,722	-				-0.6
4,770,722	-				-1.3
4,770,830	+		DZA65_RS22070	0.18	-0.1
4,770,931	+		DZA65_RS22070	0.28	-1.5
4,770,932	-		DZA65_RS22070	0.28	+0.7
4,770,932	-		DZA65_RS22070	0.28	-0.5
4,771,072	+		DZA65_RS22070	0.42	-0.8
4,771,073	-		DZA65_RS22070	0.42	-0.7