Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21995

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,755,146	+		DZA65_RS21990	0.31	+1.0
4,755,147	-		DZA65_RS21990	0.31	+1.5
4,755,147	-		DZA65_RS21990	0.31	+0.3
4,755,173	+		DZA65_RS21990	0.35	-0.5
4,755,173	+		DZA65_RS21990	0.35	+0.1
4,755,173	+		DZA65_RS21990	0.35	-0.3
4,755,173	+		DZA65_RS21990	0.35	-1.6
4,755,173	+		DZA65_RS21990	0.35	+0.4
4,755,174	-		DZA65_RS21990	0.35	+0.5
4,755,174	-		DZA65_RS21990	0.35	-0.9
4,755,174	-		DZA65_RS21990	0.35	-0.3
4,755,174	-		DZA65_RS21990	0.35	-0.1
4,755,330	+		DZA65_RS21990	0.54	-1.8
4,755,330	+		DZA65_RS21990	0.54	+0.3
4,755,330	+		DZA65_RS21990	0.54	-1.9
4,755,330	+		DZA65_RS21990	0.54	+0.0
4,755,331	-		DZA65_RS21990	0.54	-1.2
4,755,332	+		DZA65_RS21990	0.54	-0.9
4,755,332	+		DZA65_RS21990	0.54	+0.2
4,755,333	-		DZA65_RS21990	0.54	-0.7
4,755,343	-		DZA65_RS21990	0.56	+0.6
4,755,365	+		DZA65_RS21990	0.58	+1.1
4,755,365	+		DZA65_RS21990	0.58	-1.7
4,755,428	+		DZA65_RS21990	0.66	-0.7
4,755,428	+		DZA65_RS21990	0.66	+0.8
4,755,428	+		DZA65_RS21990	0.66	+0.4
4,755,428	+		DZA65_RS21990	0.66	+0.1
4,755,428	+		DZA65_RS21990	0.66	-0.7
4,755,428	+		DZA65_RS21990	0.66	+2.3
4,755,429	-		DZA65_RS21990	0.66	+0.1
4,755,429	-		DZA65_RS21990	0.66	-1.3
4,755,447	+		DZA65_RS21990	0.68	-0.7
4,755,448	-		DZA65_RS21990	0.68	-1.0
4,755,448	-		DZA65_RS21990	0.68	-1.2
4,755,448	-		DZA65_RS21990	0.68	+0.4
4,755,448	-		DZA65_RS21990	0.68	-1.5
4,755,448	-		DZA65_RS21990	0.68	+1.7
4,755,498	+		DZA65_RS21990	0.75	-0.1
4,755,513	-		DZA65_RS21990	0.76	-0.5
4,755,548	+		DZA65_RS21990	0.81	-1.2
4,755,593	+		DZA65_RS21990	0.86	-0.7
4,755,593	+		DZA65_RS21990	0.86	-0.0
4,755,593	+		DZA65_RS21990	0.86	+0.1
4,755,593	+		DZA65_RS21990	0.86	-0.4
4,755,593	+		DZA65_RS21990	0.86	+0.5
4,755,594	-		DZA65_RS21990	0.86	-0.3
4,755,594	-		DZA65_RS21990	0.86	+0.5
4,755,594	-		DZA65_RS21990	0.86	+0.6
4,755,594	-		DZA65_RS21990	0.86	-1.5
4,755,594	-		DZA65_RS21990	0.86	+0.4
4,755,678	+				+1.5
4,755,718	+				-0.5
4,755,727	+				+0.5
4,755,727	+				+2.0
4,755,727	+				+0.5
4,755,727	+				-0.6
4,755,727	+				-0.3
4,755,727	+				+0.4
4,755,727	+				-2.0
4,755,727	+				-1.0
4,755,728	-				-1.6
4,755,728	-				-0.0
4,755,728	-				-0.7
4,755,728	-				-1.2
4,755,728	-				-1.2
4,755,728	-				-0.1
4,755,728	-				-1.6
4,755,728	-				-0.2
4,755,728	-				-0.9
4,755,731	+				-0.3
4,755,732	-				+0.7
4,755,744	-				-0.9
4,755,796	+				+1.1
4,755,796	+				+0.1
4,755,797	-				+0.1
4,755,797	-				-2.3
4,755,866	+				+0.5
4,755,893	+				-0.4
4,755,894	-				+1.7
4,755,897	+				-0.9
4,755,950	+				-0.1
4,755,951	-				+0.1
4,755,954	+				+0.4
4,755,954	+				-2.9
4,755,954	+				-0.4
4,755,954	+				+1.6
4,755,954	+				+0.4
4,755,954	+				+0.4
4,755,954	+				-1.1
4,755,955	-				+1.1
4,755,955	-				-2.6
4,755,955	-				-0.3
4,755,955	-				+0.3
4,755,955	-				+0.9
4,755,964	+				-0.1
4,755,965	-				-0.0
4,755,965	-				+0.6
4,756,010	-				+1.1
4,756,043	+				-0.7
4,756,043	+				-0.5
4,756,043	+				-1.5
4,756,043	+				+0.3
4,756,043	+				-1.6
4,756,043	+				+0.5
4,756,043	+				-1.2
4,756,043	+				-1.7
4,756,043	+				-1.7
4,756,043	+				+0.4
4,756,043	+				+1.1
4,756,043	+				-0.5
4,756,043	+				-0.5
4,756,043	+				-0.9
4,756,043	+				-0.7
4,756,043	+				-0.5
4,756,043	+				+0.2
4,756,044	-				-1.5
4,756,044	-				-1.9
4,756,044	-				+1.3
4,756,044	-				-0.5
4,756,044	-				-1.1
4,756,044	-				-1.2
4,756,044	-				-0.5
4,756,044	-				+0.7
4,756,044	-				+2.1
4,756,044	-				+0.7
4,756,044	-				-1.0
4,756,044	-				+1.1
4,756,044	-				-2.2
4,756,044	-				-0.7
4,756,044	-				-0.7
4,756,044	-				+1.9
4,756,058	+		DZA65_RS21995	0.11	+1.1
4,756,137	+		DZA65_RS21995	0.30	-1.3
4,756,138	+		DZA65_RS21995	0.30	-0.5
4,756,138	+		DZA65_RS21995	0.30	+0.5
4,756,138	+		DZA65_RS21995	0.30	+0.1
4,756,138	+		DZA65_RS21995	0.30	-0.2
4,756,138	+		DZA65_RS21995	0.30	-0.5
4,756,138	+		DZA65_RS21995	0.30	+0.4
4,756,139	-		DZA65_RS21995	0.30	+0.1
4,756,139	-		DZA65_RS21995	0.30	+1.5
4,756,139	-		DZA65_RS21995	0.30	-1.5
4,756,139	-		DZA65_RS21995	0.30	-0.3
4,756,139	-		DZA65_RS21995	0.30	-2.2
4,756,139	-		DZA65_RS21995	0.30	-0.1
4,756,139	-		DZA65_RS21995	0.30	-1.2
4,756,202	+		DZA65_RS21995	0.45	-0.6
4,756,202	+		DZA65_RS21995	0.45	+0.1
4,756,203	-		DZA65_RS21995	0.45	+0.1
4,756,303	+		DZA65_RS21995	0.68	-1.2
4,756,303	+		DZA65_RS21995	0.68	-1.2
4,756,304	-		DZA65_RS21995	0.68	-0.9
4,756,304	-		DZA65_RS21995	0.68	-0.8
4,756,315	+		DZA65_RS21995	0.71	+0.4
4,756,315	+		DZA65_RS21995	0.71	-0.8
4,756,316	-		DZA65_RS21995	0.71	+0.1
4,756,316	-		DZA65_RS21995	0.71	+0.9
4,756,316	-		DZA65_RS21995	0.71	-0.1
4,756,316	-		DZA65_RS21995	0.71	-1.0
4,756,316	-		DZA65_RS21995	0.71	+0.8
4,756,354	+		DZA65_RS21995	0.80	-1.8
4,756,355	-		DZA65_RS21995	0.80	-0.3
4,756,355	-		DZA65_RS21995	0.80	-0.9
4,756,355	-		DZA65_RS21995	0.80	+0.5
4,756,386	+		DZA65_RS21995	0.87	+0.1
4,756,387	-		DZA65_RS21995	0.87	-1.5
4,756,387	-		DZA65_RS21995	0.87	-1.4
4,756,394	+		DZA65_RS21995	0.89	+1.1
4,756,394	+		DZA65_RS21995	0.89	-0.9
4,756,395	-		DZA65_RS21995	0.89	+0.7
4,756,395	-		DZA65_RS21995	0.89	+0.5
4,756,395	-		DZA65_RS21995	0.89	+0.3
4,756,395	-		DZA65_RS21995	0.89	-0.6
4,756,395	-		DZA65_RS21995	0.89	-0.5
4,756,395	-		DZA65_RS21995	0.89	-1.9
4,756,433	+				+0.1
4,756,433	+				+0.1
4,756,433	+				-2.0
4,756,433	+				+0.2
4,756,433	+				-0.5
4,756,433	+				-1.3
4,756,433	+				-1.6
4,756,434	-				-0.2
4,756,434	-				-0.7
4,756,434	-				+2.1
4,756,434	-				+0.6
4,756,434	-				-0.4
4,756,434	-				-2.0
4,756,435	+				+1.1
4,756,435	+				-1.7
4,756,435	+				+0.1
4,756,435	+				+1.1
4,756,436	-				+0.0
4,756,436	-				-1.2
4,756,445	+				+1.9
4,756,445	+				-1.2
4,756,445	+				+0.1
4,756,445	+				-0.7
4,756,446	-				-1.2
4,756,446	-				-1.3
4,756,465	+				+0.1
4,756,465	+				+0.4
4,756,472	+				+0.2
4,756,472	+				+0.5
4,756,472	+				+0.6
4,756,473	-				+1.5
4,756,484	+				+0.1
4,756,484	+				+0.9
4,756,484	+				-1.5
4,756,484	+				-0.2
4,756,484	+				-0.2
4,756,485	-				-0.5
4,756,485	-				-0.9
4,756,485	-				+0.6
4,756,525	+				-0.3
4,756,525	+				+0.0
4,756,525	+				+0.5
4,756,525	+				+0.5
4,756,525	+				+0.4
4,756,526	-				-0.2
4,756,526	-				+0.5
4,756,526	-				-0.1
4,756,547	+				+1.0
4,756,547	+				+0.4
4,756,547	+				-1.0
4,756,548	-				+0.5
4,756,548	-				-1.0
4,756,548	-				+0.1
4,756,548	-				-0.5
4,756,573	+				-1.1
4,756,573	+				-0.2
4,756,573	+				+0.6
4,756,573	+				-2.0
4,756,573	+				-0.8
4,756,573	+				+0.8
4,756,573	+				+0.2
4,756,574	-				+1.9
4,756,574	-				+0.3
4,756,643	+				+0.1
4,756,643	+				-0.7
4,756,643	+				-0.1
4,756,643	+				-0.5
4,756,643	+				+1.1
4,756,643	+				-1.2
4,756,643	+				-0.5
4,756,643	+				-0.0
4,756,644	-				-0.3
4,756,644	-				-1.7
4,756,647	+				-0.1
4,756,647	+				-0.1
4,756,647	+				+1.7
4,756,647	+				+0.3
4,756,647	+				+0.0
4,756,647	+				-1.5
4,756,647	+				-0.4
4,756,647	+				+0.8
4,756,647	+				-0.5
4,756,648	-				-0.5
4,756,648	-				+0.1
4,756,648	-				-0.5
4,756,648	-				+0.4
4,756,648	-				-0.2
4,756,648	-				-1.2
4,756,648	-				-1.3
4,756,648	-				-1.3
4,756,648	-				-1.2
4,756,651	-				-2.0
4,756,663	+				-2.5
4,756,663	+				+0.1
4,756,663	+				-0.5
4,756,664	-				-0.7
4,756,664	-				-2.2
4,756,664	-				-2.0
4,756,696	+				+1.7
4,756,696	+				+0.1
4,756,814	+				+0.2
4,756,814	+				-1.9
4,756,814	+				-1.2
4,756,814	+				-0.3
4,756,814	+				+1.9
4,756,814	+				-0.1
4,756,814	+				-0.4
4,756,814	+				-0.7
4,756,815	-				+1.6
4,756,815	-				-0.6
4,756,825	+				+0.2
4,756,825	+				-0.6
4,756,825	+				+1.1
4,756,825	+				-0.5
4,756,826	-				+0.3
4,756,830	+				+0.0
4,756,830	+				-0.1
4,756,830	+				+0.8
4,756,830	+				-0.5
4,756,831	-				+0.5
4,756,831	-				-0.2
4,756,831	-				+0.5
4,756,879	-				-0.5
4,756,879	-				-0.9
4,756,879	-				-1.1
4,756,912	+				-0.5
4,756,913	-				-0.7
4,756,913	-				+0.5
4,756,914	+				-0.2
4,756,914	+				-0.9
4,756,914	+				-0.3
4,756,915	-				-0.2
4,756,915	-				+0.6
4,756,915	-				+1.6
4,756,930	+				+0.3
4,756,956	+				+0.1
4,756,956	+				-0.6
4,756,956	+				+0.4
4,756,956	+				+0.1
4,756,956	+				-2.2
4,756,956	+				+1.2
4,756,956	+				-0.0
4,756,956	+				+1.5
4,756,956	+				-2.6
4,756,956	+				-1.6
4,756,957	-				-2.0
4,756,957	-				+0.5
4,756,957	-				-1.2
4,756,960	+				+0.7
4,756,960	+				+0.4
4,756,960	+				+1.5
4,756,960	+				-0.5
4,756,961	-				-1.0
4,756,995	+				-0.6
4,756,995	+				-1.2
4,756,995	+				-0.9
4,756,995	+				+1.0
4,756,995	+				-0.5
4,756,996	-				+0.1
4,756,996	-				-1.8
4,756,996	-				-0.1
4,757,013	+				-1.0
4,757,013	+				-0.2
4,757,013	+				+0.3
4,757,014	-				+1.1
4,757,015	+				-0.9
4,757,015	+				+0.4
4,757,015	+				-0.5
4,757,015	+				+0.8
4,757,016	-				+3.1
4,757,016	-				+0.5
4,757,040	+				-0.3
4,757,040	+				+0.0
4,757,043	+				+0.7
4,757,043	+				-1.0
4,757,043	+				+2.0
4,757,043	+				-2.0
4,757,044	-				+0.1
4,757,044	-				-0.5
4,757,044	-				-0.9
4,757,066	+				-0.7
4,757,066	+				-0.5
4,757,066	+				+0.5
4,757,066	+				+0.0
4,757,066	+				+0.8
4,757,066	+				-0.2
4,757,066	+				-0.7
4,757,067	-				-0.2
4,757,067	-				-0.1
4,757,067	-				-0.6
4,757,067	-				-0.8
4,757,067	-				+0.8
4,757,067	-				-0.6
4,757,067	-				+1.4
4,757,067	-				-0.2
4,757,067	-				+0.6
4,757,101	+		DZA65_RS22000	0.20	-1.5
4,757,101	+		DZA65_RS22000	0.20	-0.9
4,757,102	-		DZA65_RS22000	0.20	+1.3
4,757,111	+		DZA65_RS22000	0.23	+0.4
4,757,155	+		DZA65_RS22000	0.36	+0.4
4,757,155	+		DZA65_RS22000	0.36	+0.9
4,757,155	+		DZA65_RS22000	0.36	-1.1
4,757,155	+		DZA65_RS22000	0.36	+0.2
4,757,156	-		DZA65_RS22000	0.36	-0.9
4,757,156	-		DZA65_RS22000	0.36	-0.9
4,757,156	-		DZA65_RS22000	0.36	+0.7
4,757,156	-		DZA65_RS22000	0.36	-0.9
4,757,161	+		DZA65_RS22000	0.38	-0.7
4,757,161	+		DZA65_RS22000	0.38	-1.2
4,757,161	+		DZA65_RS22000	0.38	-1.0
4,757,161	+		DZA65_RS22000	0.38	+0.9
4,757,161	+		DZA65_RS22000	0.38	+1.5
4,757,162	-		DZA65_RS22000	0.38	+0.1
4,757,162	-		DZA65_RS22000	0.38	-0.9
4,757,162	-		DZA65_RS22000	0.38	-1.0
4,757,162	-		DZA65_RS22000	0.38	+0.7
4,757,162	-		DZA65_RS22000	0.38	-1.7
4,757,162	-		DZA65_RS22000	0.38	-0.7
4,757,227	+		DZA65_RS22000	0.57	-0.6
4,757,227	+		DZA65_RS22000	0.57	-0.5
4,757,228	-		DZA65_RS22000	0.57	-0.3
4,757,233	+		DZA65_RS22000	0.59	-0.0
4,757,233	+		DZA65_RS22000	0.59	+0.1
4,757,233	+		DZA65_RS22000	0.59	-0.2
4,757,233	+		DZA65_RS22000	0.59	+0.8
4,757,233	+		DZA65_RS22000	0.59	-0.7
4,757,233	+		DZA65_RS22000	0.59	-0.4
4,757,234	-		DZA65_RS22000	0.59	+0.1
4,757,234	-				+1.1
4,757,234	-		DZA65_RS22000	0.59	+0.1
4,757,234	-		DZA65_RS22000	0.59	-2.2
4,757,234	-		DZA65_RS22000	0.59	-0.6
4,757,234	-		DZA65_RS22000	0.59	+1.1
4,757,234	-		DZA65_RS22000	0.59	+0.5
4,757,234	-		DZA65_RS22000	0.59	-0.5
4,757,245	+		DZA65_RS22000	0.62	+0.2
4,757,246	-		DZA65_RS22000	0.63	-1.5
4,757,357	+				+0.5
4,757,404	-				+1.4
4,757,404	-				-0.5