Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21920

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,738,314	+		DZA65_RS21915	0.30	+0.5
4,738,314	+		DZA65_RS21915	0.30	-0.9
4,738,314	+		DZA65_RS21915	0.30	+0.7
4,738,315	-		DZA65_RS21915	0.31	+0.1
4,738,316	+		DZA65_RS21915	0.31	+0.1
4,738,316	+		DZA65_RS21915	0.31	+0.4
4,738,316	+		DZA65_RS21915	0.31	-0.2
4,738,316	+		DZA65_RS21915	0.31	+0.0
4,738,316	+		DZA65_RS21915	0.31	-1.0
4,738,316	+				+0.1
4,738,316	+		DZA65_RS21915	0.31	-1.3
4,738,316	+		DZA65_RS21915	0.31	+0.3
4,738,316	+		DZA65_RS21915	0.31	+0.3
4,738,317	-		DZA65_RS21915	0.31	-1.2
4,738,317	-		DZA65_RS21915	0.31	-0.8
4,738,317	-		DZA65_RS21915	0.31	-0.2
4,738,317	-		DZA65_RS21915	0.31	+0.6
4,738,317	-		DZA65_RS21915	0.31	-0.6
4,738,317	-		DZA65_RS21915	0.31	-0.2
4,738,317	-		DZA65_RS21915	0.31	+1.4
4,738,317	-		DZA65_RS21915	0.31	+0.4
4,738,317	-		DZA65_RS21915	0.31	-1.0
4,738,356	+		DZA65_RS21915	0.35	-0.6
4,738,356	+		DZA65_RS21915	0.35	+0.3
4,738,356	+		DZA65_RS21915	0.35	-0.1
4,738,356	+		DZA65_RS21915	0.35	-1.2
4,738,356	+		DZA65_RS21915	0.35	-0.9
4,738,356	+		DZA65_RS21915	0.35	-0.4
4,738,356	+		DZA65_RS21915	0.35	-0.8
4,738,356	+		DZA65_RS21915	0.35	+0.1
4,738,357	-		DZA65_RS21915	0.35	-0.5
4,738,357	-		DZA65_RS21915	0.35	+0.7
4,738,357	-		DZA65_RS21915	0.35	+0.4
4,738,357	-		DZA65_RS21915	0.35	-1.2
4,738,357	-		DZA65_RS21915	0.35	+0.4
4,738,357	-		DZA65_RS21915	0.35	-1.0
4,738,360	+		DZA65_RS21915	0.35	-1.5
4,738,360	+		DZA65_RS21915	0.35	-1.5
4,738,360	+		DZA65_RS21915	0.35	-0.8
4,738,360	+		DZA65_RS21915	0.35	+1.5
4,738,360	+		DZA65_RS21915	0.35	+0.1
4,738,360	+		DZA65_RS21915	0.35	+0.1
4,738,360	+		DZA65_RS21915	0.35	-2.0
4,738,360	+		DZA65_RS21915	0.35	+0.1
4,738,360	+		DZA65_RS21915	0.35	-0.2
4,738,360	+		DZA65_RS21915	0.35	-1.2
4,738,360	+		DZA65_RS21915	0.35	+0.2
4,738,360	+		DZA65_RS21915	0.35	-0.6
4,738,361	-		DZA65_RS21915	0.35	-0.5
4,738,361	-		DZA65_RS21915	0.35	+0.3
4,738,361	-		DZA65_RS21915	0.35	+2.1
4,738,361	-		DZA65_RS21915	0.35	+0.1
4,738,361	-		DZA65_RS21915	0.35	+0.1
4,738,361	-		DZA65_RS21915	0.35	-1.0
4,738,361	-		DZA65_RS21915	0.35	-1.0
4,738,361	-		DZA65_RS21915	0.35	-1.8
4,738,361	-				+2.1
4,738,361	-		DZA65_RS21915	0.35	+0.1
4,738,361	-		DZA65_RS21915	0.35	+0.5
4,738,361	-		DZA65_RS21915	0.35	+1.5
4,738,361	-		DZA65_RS21915	0.35	+0.8
4,738,361	-		DZA65_RS21915	0.35	+0.1
4,738,361	-		DZA65_RS21915	0.35	-0.1
4,738,361	-		DZA65_RS21915	0.35	+1.5
4,738,361	-		DZA65_RS21915	0.35	-0.3
4,738,361	-		DZA65_RS21915	0.35	+1.1
4,738,361	-		DZA65_RS21915	0.35	+0.5
4,738,361	-		DZA65_RS21915	0.35	-0.9
4,738,361	-		DZA65_RS21915	0.35	+0.1
4,738,361	-		DZA65_RS21915	0.35	-0.3
4,738,361	-		DZA65_RS21915	0.35	-0.5
4,738,453	+		DZA65_RS21915	0.44	+0.1
4,738,453	+		DZA65_RS21915	0.44	-1.1
4,738,453	+		DZA65_RS21915	0.44	+1.4
4,738,454	-		DZA65_RS21915	0.44	-0.3
4,738,458	+		DZA65_RS21915	0.45	+0.9
4,738,458	+		DZA65_RS21915	0.45	-1.5
4,738,458	+		DZA65_RS21915	0.45	+0.1
4,738,458	+		DZA65_RS21915	0.45	-0.4
4,738,459	-		DZA65_RS21915	0.45	-0.6
4,738,470	+		DZA65_RS21915	0.46	-1.5
4,738,470	+		DZA65_RS21915	0.46	+0.4
4,738,471	-		DZA65_RS21915	0.46	-0.6
4,738,563	+		DZA65_RS21915	0.55	-0.1
4,738,563	+		DZA65_RS21915	0.55	+0.4
4,738,563	+		DZA65_RS21915	0.55	+0.4
4,738,563	+		DZA65_RS21915	0.55	-2.2
4,738,563	+		DZA65_RS21915	0.55	+2.4
4,738,564	-		DZA65_RS21915	0.55	+1.9
4,738,564	-		DZA65_RS21915	0.55	+2.1
4,738,564	-		DZA65_RS21915	0.55	-0.5
4,738,564	-		DZA65_RS21915	0.55	+0.5
4,738,564	-		DZA65_RS21915	0.55	+0.2
4,738,564	-		DZA65_RS21915	0.55	-0.1
4,738,817	+		DZA65_RS21915	0.80	+0.2
4,738,817	+		DZA65_RS21915	0.80	-0.7
4,738,817	+		DZA65_RS21915	0.80	-0.9
4,738,817	+		DZA65_RS21915	0.80	-1.2
4,738,817	+		DZA65_RS21915	0.80	+1.7
4,738,817	+		DZA65_RS21915	0.80	-0.5
4,738,817	+		DZA65_RS21915	0.80	-0.0
4,738,817	+		DZA65_RS21915	0.80	+0.1
4,738,817	+		DZA65_RS21915	0.80	+1.5
4,738,818	-		DZA65_RS21915	0.80	+0.4
4,738,818	-		DZA65_RS21915	0.80	-2.8
4,738,818	-		DZA65_RS21915	0.80	+3.9
4,738,818	-		DZA65_RS21915	0.80	+0.9
4,738,818	-		DZA65_RS21915	0.80	+1.3
4,738,818	-		DZA65_RS21915	0.80	+1.3
4,738,818	-		DZA65_RS21915	0.80	+1.1
4,738,826	+		DZA65_RS21915	0.81	+0.7
4,738,826	+		DZA65_RS21915	0.81	-1.0
4,738,826	+		DZA65_RS21915	0.81	-0.6
4,738,826	+		DZA65_RS21915	0.81	-0.1
4,738,826	+		DZA65_RS21915	0.81	-1.7
4,738,826	+		DZA65_RS21915	0.81	-0.6
4,738,826	+		DZA65_RS21915	0.81	-0.6
4,738,826	+				+1.7
4,738,826	+		DZA65_RS21915	0.81	+1.1
4,738,827	-		DZA65_RS21915	0.81	+0.6
4,738,827	-		DZA65_RS21915	0.81	+0.1
4,738,827	-		DZA65_RS21915	0.81	-0.2
4,738,960	+				+1.3
4,738,960	+				-0.5
4,738,961	-				-0.5
4,738,965	+				-1.5
4,738,965	+				+1.7
4,738,965	+				-1.2
4,739,008	+				-0.5
4,739,022	+				-0.8
4,739,022	+				-0.4
4,739,023	-				+0.5
4,739,023	-				-0.5
4,739,023	-				+2.3
4,739,038	+				+1.1
4,739,038	+				-1.0
4,739,038	+				+1.1
4,739,038	+				-0.2
4,739,039	-				+1.0
4,739,048	+				-0.4
4,739,049	-				-0.5
4,739,049	-				-0.3
4,739,049	-				+0.1
4,739,049	-				-0.9
4,739,049	-				+0.4
4,739,050	+				-0.6
4,739,050	+				-2.0
4,739,050	+				+1.1
4,739,050	+				-1.9
4,739,051	-				+0.4
4,739,051	-				+0.1
4,739,051	-				+0.0
4,739,051	-				+0.1
4,739,051	-				-1.0
4,739,056	+				+0.5
4,739,057	-				+0.8
4,739,057	-				+0.9
4,739,057	-				-0.2
4,739,156	+				-1.0
4,739,157	-				+0.5
4,739,157	-				-2.4
4,739,208	+				+0.1
4,739,209	-				+0.2
4,739,209	-				-0.2
4,739,209	-				-0.7
4,739,209	-				+3.1
4,739,219	+				+0.9
4,739,219	+				-0.5
4,739,219	+				+0.4
4,739,220	-				+1.7
4,739,220	-				+0.5
4,739,220	-				+0.1
4,739,220	-				-0.3
4,739,220	-				-0.7
4,739,220	-				-0.5
4,739,230	+				+2.8
4,739,230	+				-0.5
4,739,230	+				+0.4
4,739,230	+				+0.9
4,739,230	+				+0.7
4,739,230	+				-0.5
4,739,230	+				-1.7
4,739,231	-				-1.7
4,739,231	-				+2.4
4,739,235	+				+0.1
4,739,236	-				+0.3
4,739,236	-				+1.7
4,739,236	-				+0.3
4,739,241	+				-1.9
4,739,241	+				+0.8
4,739,241	+				-0.3
4,739,241	+				-0.7
4,739,242	-				+0.5
4,739,242	-				-0.9
4,739,242	-				+0.5
4,739,242	-				+0.2
4,739,242	-				-0.5
4,739,242	-				-1.7
4,739,242	-				-1.5
4,739,242	-				-0.5
4,739,255	+				-0.3
4,739,255	+				+0.3
4,739,255	+				+0.6
4,739,255	+				+1.1
4,739,255	+				-0.6
4,739,255	+				-0.2
4,739,255	+				+0.6
4,739,255	+				+0.4
4,739,256	-				-1.2
4,739,256	-				-0.5
4,739,256	-				+1.6
4,739,256	-				+1.1
4,739,256	-				+0.1
4,739,256	-				-1.0
4,739,281	+				+0.5
4,739,281	+				+0.5
4,739,282	-				+0.1
4,739,282	-				-2.1
4,739,282	-				+3.3
4,739,298	-				+0.4
4,739,311	+				+0.1
4,739,311	+				-1.2
4,739,311	+				-1.5
4,739,311	+				+0.0
4,739,312	-				-0.0
4,739,312	-				-0.9
4,739,312	-				+0.8
4,739,312	-				-1.2
4,739,312	-				-1.5
4,739,377	+				+0.1
4,739,377	+				+0.1
4,739,377	+				-0.1
4,739,377	+				-1.2
4,739,378	-				-0.3
4,739,378	-				+0.1
4,739,378	-				-0.5
4,739,378	-				+1.0
4,739,388	-				+2.1
4,739,388	-				-0.9
4,739,446	+		DZA65_RS21920	0.13	-0.0
4,739,446	+		DZA65_RS21920	0.13	+1.2
4,739,446	+		DZA65_RS21920	0.13	+2.0
4,739,446	+		DZA65_RS21920	0.13	+0.2
4,739,446	+		DZA65_RS21920	0.13	-0.7
4,739,446	+		DZA65_RS21920	0.13	-1.7
4,739,446	+				+0.1
4,739,447	-		DZA65_RS21920	0.14	+0.1
4,739,461	+		DZA65_RS21920	0.14	-0.3
4,739,461	+		DZA65_RS21920	0.14	-0.4
4,739,588	-		DZA65_RS21920	0.22	-0.4
4,739,588	-		DZA65_RS21920	0.22	+0.3
4,739,588	-		DZA65_RS21920	0.22	-0.6
4,739,602	+		DZA65_RS21920	0.23	+0.6
4,739,602	+		DZA65_RS21920	0.23	+0.1
4,739,602	+		DZA65_RS21920	0.23	+2.1
4,739,603	-		DZA65_RS21920	0.23	+0.5
4,739,603	-		DZA65_RS21920	0.23	-0.1
4,739,603	-		DZA65_RS21920	0.23	+0.0
4,739,603	-		DZA65_RS21920	0.23	-0.2
4,739,603	-		DZA65_RS21920	0.23	+0.8
4,739,603	-		DZA65_RS21920	0.23	-0.5
4,739,603	-		DZA65_RS21920	0.23	-0.1
4,739,610	+		DZA65_RS21920	0.24	-0.7
4,739,610	+		DZA65_RS21920	0.24	-1.9
4,739,610	+		DZA65_RS21920	0.24	-1.0
4,739,610	+		DZA65_RS21920	0.24	-0.6
4,739,611	-		DZA65_RS21920	0.24	+0.5
4,739,611	-		DZA65_RS21920	0.24	-0.5
4,739,611	-		DZA65_RS21920	0.24	+0.1
4,739,611	-		DZA65_RS21920	0.24	-1.9
4,739,611	-		DZA65_RS21920	0.24	+0.1
4,739,611	-		DZA65_RS21920	0.24	+1.1
4,739,611	-		DZA65_RS21920	0.24	-0.3
4,739,683	+		DZA65_RS21920	0.28	+0.5
4,739,684	-		DZA65_RS21920	0.28	+0.7
4,739,684	-		DZA65_RS21920	0.28	+0.3
4,739,684	-		DZA65_RS21920	0.28	-0.6
4,739,684	-		DZA65_RS21920	0.28	+2.1
4,739,776	+		DZA65_RS21920	0.34	+1.6
4,739,776	+		DZA65_RS21920	0.34	-0.2
4,739,776	+		DZA65_RS21920	0.34	-0.5
4,739,776	+		DZA65_RS21920	0.34	-0.9
4,739,776	+		DZA65_RS21920	0.34	-1.5
4,739,777	-		DZA65_RS21920	0.34	+0.9
4,739,777	-		DZA65_RS21920	0.34	-2.5
4,739,777	-		DZA65_RS21920	0.34	-0.5
4,739,777	-		DZA65_RS21920	0.34	+0.3
4,739,782	+		DZA65_RS21920	0.34	+2.1
4,739,782	+		DZA65_RS21920	0.34	+0.6
4,739,782	+		DZA65_RS21920	0.34	-1.2
4,739,783	-		DZA65_RS21920	0.34	+0.2
4,739,783	-		DZA65_RS21920	0.34	-0.9
4,739,789	+		DZA65_RS21920	0.35	-1.6
4,739,790	-		DZA65_RS21920	0.35	+0.4
4,739,802	-		DZA65_RS21920	0.36	+2.3
4,739,802	-		DZA65_RS21920	0.36	-0.8
4,739,803	+		DZA65_RS21920	0.36	-0.5
4,739,804	-		DZA65_RS21920	0.36	+0.2
4,739,804	-		DZA65_RS21920	0.36	+0.1
4,739,804	-		DZA65_RS21920	0.36	-1.0
4,739,804	-		DZA65_RS21920	0.36	+1.4
4,739,804	-		DZA65_RS21920	0.36	-0.2
4,739,804	-		DZA65_RS21920	0.36	-0.5
4,739,857	+		DZA65_RS21920	0.39	-0.6
4,739,857	+		DZA65_RS21920	0.39	-0.7
4,739,857	+		DZA65_RS21920	0.39	-1.6
4,739,857	+		DZA65_RS21920	0.39	+0.5
4,739,858	-		DZA65_RS21920	0.39	+2.4
4,739,858	-		DZA65_RS21920	0.39	+0.3
4,739,858	-		DZA65_RS21920	0.39	+0.4
4,739,894	-		DZA65_RS21920	0.41	-0.3
4,739,956	+		DZA65_RS21920	0.45	-0.3
4,739,957	-		DZA65_RS21920	0.45	-0.8
4,739,957	-		DZA65_RS21920	0.45	-0.1
4,739,957	-		DZA65_RS21920	0.45	-0.2
4,740,098	+		DZA65_RS21920	0.54	+0.1
4,740,160	+		DZA65_RS21920	0.58	+2.7
4,740,160	+		DZA65_RS21920	0.58	+0.9
4,740,160	+		DZA65_RS21920	0.58	+0.6
4,740,161	-		DZA65_RS21920	0.58	-0.3
4,740,161	-		DZA65_RS21920	0.58	+0.7
4,740,161	-		DZA65_RS21920	0.58	+0.7
4,740,184	+		DZA65_RS21920	0.59	+0.5
4,740,184	+		DZA65_RS21920	0.59	+0.1
4,740,269	-		DZA65_RS21920	0.65	+0.7
4,740,353	+		DZA65_RS21920	0.70	+1.7
4,740,353	+		DZA65_RS21920	0.70	+2.1
4,740,353	+		DZA65_RS21920	0.70	-1.7
4,740,354	-		DZA65_RS21920	0.70	+0.8
4,740,354	-		DZA65_RS21920	0.70	+0.7
4,740,354	-		DZA65_RS21920	0.70	-2.0
4,740,354	-		DZA65_RS21920	0.70	+1.1
4,740,354	-		DZA65_RS21920	0.70	+0.1
4,740,354	-		DZA65_RS21920	0.70	+1.6
4,740,355	+		DZA65_RS21920	0.70	+3.1
4,740,355	+		DZA65_RS21920	0.70	-0.4
4,740,355	+		DZA65_RS21920	0.70	-2.0
4,740,355	+		DZA65_RS21920	0.70	-0.3
4,740,355	+		DZA65_RS21920	0.70	+0.1
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