Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21900

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,734,103	+				+0.9
4,734,104	-				+1.8
4,734,131	+				-2.9
4,734,131	+				+0.1
4,734,131	+				+0.1
4,734,132	-				-0.9
4,734,136	-				-0.8
4,734,139	+				-0.2
4,734,140	-				-1.5
4,734,140	-				+0.0
4,734,140	-				-0.3
4,734,140	-				-1.0
4,734,145	-				-1.7
4,734,150	+				+0.5
4,734,174	+				-1.1
4,734,187	+				-0.0
4,734,187	+				-0.1
4,734,187	+				+0.4
4,734,188	-				-0.2
4,734,191	+				+0.9
4,734,191	+				-1.1
4,734,192	-				-0.1
4,734,192	-				-0.2
4,734,192	-				-0.6
4,734,207	+				-1.0
4,734,207	+				+0.5
4,734,207	+				+0.9
4,734,207	+				-0.7
4,734,207	+				+0.1
4,734,207	+				+0.7
4,734,208	-				+0.1
4,734,208	-				+0.8
4,734,208	-				-1.7
4,734,213	-				-1.5
4,734,213	-				+0.4
4,734,237	-				+1.1
4,734,237	-				+0.3
4,734,256	-				-0.3
4,734,265	+				+0.4
4,734,270	-				+1.1
4,734,279	-				-0.7
4,734,297	+				+0.8
4,734,297	+				+0.2
4,734,297	+				+1.1
4,734,297	+				-2.2
4,734,298	-				-0.0
4,734,298	-				-1.2
4,734,298	-				-0.3
4,734,356	+				-0.3
4,734,356	+				+0.5
4,734,356	+				+1.0
4,734,357	-				-1.0
4,734,357	-				-0.0
4,734,357	-				-1.2
4,734,357	-				-1.0
4,734,367	+				-0.7
4,734,368	-				-0.9
4,734,368	-				-0.5
4,734,368	-				+0.1
4,734,368	-				-1.1
4,734,435	+		DZA65_RS21890	0.14	-2.0
4,734,471	+		DZA65_RS21890	0.31	+0.5
4,734,472	-		DZA65_RS21890	0.31	+0.2
4,734,489	+		DZA65_RS21890	0.39	-0.9
4,734,489	+		DZA65_RS21890	0.39	-0.3
4,734,489	+		DZA65_RS21890	0.39	-1.7
4,734,489	+		DZA65_RS21890	0.39	+0.3
4,734,489	+		DZA65_RS21890	0.39	+0.7
4,734,490	-		DZA65_RS21890	0.39	-0.1
4,734,526	+		DZA65_RS21890	0.56	-0.3
4,734,526	+		DZA65_RS21890	0.56	+0.2
4,734,526	+		DZA65_RS21890	0.56	+2.1
4,734,526	+		DZA65_RS21890	0.56	+0.4
4,734,526	+		DZA65_RS21890	0.56	+1.5
4,734,527	-		DZA65_RS21890	0.57	+1.1
4,734,527	-		DZA65_RS21890	0.57	+0.2
4,734,527	-		DZA65_RS21890	0.57	+0.2
4,734,527	-		DZA65_RS21890	0.57	+0.1
4,734,527	-		DZA65_RS21890	0.57	-1.5
4,734,527	-		DZA65_RS21890	0.57	+0.8
4,734,564	+		DZA65_RS21890	0.74	-0.7
4,734,564	+		DZA65_RS21890	0.74	+0.8
4,734,565	-		DZA65_RS21890	0.75	+0.0
4,734,577	+		DZA65_RS21890	0.80	-0.9
4,734,577	+		DZA65_RS21890	0.80	-0.1
4,734,577	+		DZA65_RS21890	0.80	-1.2
4,734,577	+		DZA65_RS21890	0.80	-0.4
4,734,577	+		DZA65_RS21890	0.80	-2.0
4,734,577	+		DZA65_RS21890	0.80	-1.9
4,734,578	-		DZA65_RS21890	0.81	+0.7
4,734,578	-		DZA65_RS21890	0.81	-1.2
4,734,578	-		DZA65_RS21890	0.81	+0.3
4,734,578	-		DZA65_RS21890	0.81	+0.4
4,734,579	+		DZA65_RS21890	0.81	+0.1
4,734,579	+		DZA65_RS21890	0.81	+0.1
4,734,579	+		DZA65_RS21890	0.81	+0.8
4,734,579	+		DZA65_RS21890	0.81	-0.3
4,734,579	+		DZA65_RS21890	0.81	+2.3
4,734,579	+		DZA65_RS21890	0.81	-0.5
4,734,579	+		DZA65_RS21890	0.81	+0.1
4,734,579	+		DZA65_RS21890	0.81	-1.0
4,734,580	-		DZA65_RS21890	0.82	+0.3
4,734,580	-		DZA65_RS21890	0.82	+0.7
4,734,580	-		DZA65_RS21890	0.82	-0.9
4,734,580	-		DZA65_RS21890	0.82	-1.6
4,734,580	-		DZA65_RS21890	0.82	+0.4
4,734,636	+				-0.7
4,734,636	+				-1.2
4,734,637	-				+0.1
4,734,637	-				+1.1
4,734,637	-				+0.9
4,734,699	+				+1.5
4,734,699	+				-1.5
4,734,699	+				-1.6
4,734,699	+				-2.0
4,734,699	+				+0.1
4,734,699	+				-1.9
4,734,699	+				+0.6
4,734,699	+				-0.8
4,734,699	+				-1.7
4,734,699	+				-0.6
4,734,700	-				+1.6
4,734,700	-				+0.3
4,734,700	-				-0.5
4,734,700	-				-2.2
4,734,737	+		DZA65_RS21895	0.21	-0.8
4,734,737	+		DZA65_RS21895	0.21	+1.3
4,734,737	+		DZA65_RS21895	0.21	-1.9
4,734,737	+		DZA65_RS21895	0.21	+0.5
4,734,737	+		DZA65_RS21895	0.21	+0.8
4,734,737	+		DZA65_RS21895	0.21	+0.9
4,734,737	+		DZA65_RS21895	0.21	-0.5
4,734,737	+		DZA65_RS21895	0.21	-1.0
4,734,737	+		DZA65_RS21895	0.21	+2.0
4,734,737	+		DZA65_RS21895	0.21	+0.9
4,734,738	-		DZA65_RS21895	0.22	-0.5
4,734,738	-		DZA65_RS21895	0.22	+1.1
4,734,738	-		DZA65_RS21895	0.22	+1.9
4,734,738	-		DZA65_RS21895	0.22	+0.0
4,734,738	-		DZA65_RS21895	0.22	-1.2
4,734,749	+		DZA65_RS21895	0.25	-0.1
4,734,770	+		DZA65_RS21895	0.33	+0.9
4,734,770	+		DZA65_RS21895	0.33	+0.6
4,734,770	+		DZA65_RS21895	0.33	+0.2
4,734,771	-		DZA65_RS21895	0.33	-0.1
4,734,771	-		DZA65_RS21895	0.33	+0.2
4,734,776	-		DZA65_RS21895	0.35	+2.1
4,734,776	-		DZA65_RS21895	0.35	-0.9
4,734,811	+		DZA65_RS21895	0.47	+0.8
4,734,821	+		DZA65_RS21895	0.50	-0.0
4,734,821	+		DZA65_RS21895	0.50	+0.9
4,734,852	+		DZA65_RS21895	0.61	+0.2
4,734,852	+		DZA65_RS21895	0.61	+0.5
4,734,853	-		DZA65_RS21895	0.61	+0.1
4,734,853	-		DZA65_RS21895	0.61	+1.1
4,734,898	+		DZA65_RS21895	0.77	-0.7
4,734,898	+		DZA65_RS21895	0.77	+0.4
4,734,898	+		DZA65_RS21895	0.77	+0.8
4,734,898	+		DZA65_RS21895	0.77	+0.1
4,734,898	+		DZA65_RS21895	0.77	+0.3
4,734,898	+		DZA65_RS21895	0.77	-1.0
4,734,899	-		DZA65_RS21895	0.77	-0.7
4,734,899	-		DZA65_RS21895	0.77	+1.1
4,734,899	-		DZA65_RS21895	0.77	+0.2
4,734,964	-				-0.0
4,734,964	-				-0.9
4,734,964	-				+0.8
4,734,964	-				+0.1
4,734,964	-				-0.1
4,734,992	+				-0.2
4,734,992	+				-0.3
4,734,992	+				-2.2
4,734,993	-				+0.1
4,734,993	-				-0.5
4,734,994	+				+1.9
4,734,994	+				+0.5
4,734,994	+				-1.2
4,734,994	+				-2.0
4,734,994	+				+0.5
4,734,994	+				+0.4
4,734,995	-				-1.5
4,734,995	-				-1.5
4,734,995	-				-0.9
4,734,995	-				-1.9
4,734,995	-				+0.6
4,735,013	-				-0.6
4,735,029	-				+0.1
4,735,029	-				+0.1
4,735,044	+				-1.4
4,735,044	+				-1.2
4,735,044	+				-0.1
4,735,044	+				-0.2
4,735,044	+				+1.4
4,735,044	+				+0.1
4,735,045	-				-0.5
4,735,045	-				+0.8
4,735,045	-				-0.0
4,735,045	-				+2.1
4,735,045	-				+0.1
4,735,045	-				-1.0
4,735,045	-				-0.1
4,735,048	+				-0.3
4,735,048	+				+0.3
4,735,048	+				-1.9
4,735,048	+				-0.9
4,735,048	+				-1.2
4,735,048	+				-0.9
4,735,048	+				+1.8
4,735,048	+				-0.6
4,735,049	-				-0.4
4,735,049	-				-0.1
4,735,049	-				+0.4
4,735,049	-				+0.6
4,735,049	-				-0.5
4,735,049	-				-1.3
4,735,060	+				+0.7
4,735,060	+				-0.6
4,735,060	+				-2.5
4,735,060	+				-2.0
4,735,060	+				+0.8
4,735,060	+				-1.8
4,735,060	+				-0.0
4,735,060	+				+0.4
4,735,060	+				-0.6
4,735,061	-				-0.0
4,735,061	-				+0.4
4,735,061	-				-1.5
4,735,061	-				-0.7
4,735,061	-				+0.0
4,735,061	-				+0.4
4,735,061	-				+0.3
4,735,061	-				+1.1
4,735,061	-				-0.2
4,735,061	-				-0.9
4,735,061	-				+0.7
4,735,064	+				+2.2
4,735,064	+				-2.0
4,735,064	+				-1.5
4,735,064	+				-0.5
4,735,065	-				-0.2
4,735,065	-				-0.2
4,735,065	-				+1.1
4,735,065	-				+0.5
4,735,065	-				-0.9
4,735,081	+				+1.5
4,735,081	+				-0.2
4,735,082	-				-0.4
4,735,103	-				-0.3
4,735,153	+				+1.4
4,735,154	-				+1.2
4,735,154	-				-0.5
4,735,310	+		DZA65_RS21900	0.23	+0.6
4,735,373	+		DZA65_RS21900	0.30	+0.5
4,735,373	+		DZA65_RS21900	0.30	-1.9
4,735,373	+		DZA65_RS21900	0.30	-1.4
4,735,373	+		DZA65_RS21900	0.30	-0.9
4,735,373	+		DZA65_RS21900	0.30	-0.5
4,735,373	+		DZA65_RS21900	0.30	-0.7
4,735,373	+		DZA65_RS21900	0.30	+0.6
4,735,374	-		DZA65_RS21900	0.30	-0.5
4,735,374	-		DZA65_RS21900	0.30	-0.3
4,735,374	-		DZA65_RS21900	0.30	+0.8
4,735,374	-				+0.1
4,735,374	-		DZA65_RS21900	0.30	+2.1
4,735,374	-		DZA65_RS21900	0.30	+0.4
4,735,374	-		DZA65_RS21900	0.30	-0.2
4,735,374	-		DZA65_RS21900	0.30	+0.6
4,735,436	+		DZA65_RS21900	0.36	-0.1
4,735,436	+		DZA65_RS21900	0.36	+0.3
4,735,436	+		DZA65_RS21900	0.36	-0.5
4,735,436	+		DZA65_RS21900	0.36	+0.1
4,735,436	+		DZA65_RS21900	0.36	+1.8
4,735,436	+		DZA65_RS21900	0.36	+0.7
4,735,436	+		DZA65_RS21900	0.36	+0.1
4,735,436	+		DZA65_RS21900	0.36	+2.1
4,735,436	+		DZA65_RS21900	0.36	+1.1
4,735,436	+		DZA65_RS21900	0.36	+1.7
4,735,436	+		DZA65_RS21900	0.36	+1.7
4,735,437	-		DZA65_RS21900	0.36	-0.7
4,735,437	-		DZA65_RS21900	0.36	-1.0
4,735,437	-		DZA65_RS21900	0.36	-0.5
4,735,437	-		DZA65_RS21900	0.36	+0.6
4,735,437	-		DZA65_RS21900	0.36	-0.7
4,735,437	-		DZA65_RS21900	0.36	-0.9
4,735,437	-		DZA65_RS21900	0.36	+0.6
4,735,437	-		DZA65_RS21900	0.36	-2.0
4,735,437	-		DZA65_RS21900	0.36	+0.6
4,735,437	-		DZA65_RS21900	0.36	+1.3
4,735,437	-		DZA65_RS21900	0.36	+0.3
4,735,616	+		DZA65_RS21900	0.54	+0.0
4,735,616	+		DZA65_RS21900	0.54	+1.3
4,735,616	+		DZA65_RS21900	0.54	-0.3
4,735,617	-		DZA65_RS21900	0.54	+0.5
4,735,617	-		DZA65_RS21900	0.54	+0.4
4,735,617	-		DZA65_RS21900	0.54	-0.2
4,735,617	-		DZA65_RS21900	0.54	+1.0
4,735,755	-		DZA65_RS21900	0.67	+0.1
4,735,755	-		DZA65_RS21900	0.67	+0.5
4,735,838	+		DZA65_RS21900	0.76	-0.8
4,735,838	+		DZA65_RS21900	0.76	+0.1
4,735,838	+		DZA65_RS21900	0.76	-1.7
4,735,838	+		DZA65_RS21900	0.76	+0.5
4,735,839	-		DZA65_RS21900	0.76	+0.8
4,735,839	-		DZA65_RS21900	0.76	+0.2
4,735,839	-		DZA65_RS21900	0.76	+0.6
4,735,839	-		DZA65_RS21900	0.76	+0.8
4,735,839	-		DZA65_RS21900	0.76	-1.0
4,735,841	+		DZA65_RS21900	0.76	-0.3
4,735,841	+		DZA65_RS21900	0.76	+0.4
4,735,841	+		DZA65_RS21900	0.76	+1.3
4,735,841	+		DZA65_RS21900	0.76	+0.9
4,735,841	+		DZA65_RS21900	0.76	-2.2
4,735,842	-		DZA65_RS21900	0.76	+0.5
4,735,842	-				+2.4
4,735,842	-				-0.9
4,735,842	-		DZA65_RS21900	0.76	+1.1
4,735,842	-		DZA65_RS21900	0.76	-0.2
4,735,842	-		DZA65_RS21900	0.76	-0.7
4,735,893	+		DZA65_RS21900	0.81	-0.9
4,735,893	+		DZA65_RS21900	0.81	+0.1
4,735,893	+		DZA65_RS21900	0.81	-0.5
4,735,893	+		DZA65_RS21900	0.81	+0.6
4,735,894	-		DZA65_RS21900	0.81	+0.9
4,735,894	-		DZA65_RS21900	0.81	-1.2
4,735,950	+		DZA65_RS21900	0.87	+0.4
4,735,950	+		DZA65_RS21900	0.87	-1.2
4,735,950	+		DZA65_RS21900	0.87	-0.5
4,735,950	+		DZA65_RS21900	0.87	-0.7
4,735,951	-		DZA65_RS21900	0.87	+0.3
4,735,951	-		DZA65_RS21900	0.87	+0.4
4,735,951	-		DZA65_RS21900	0.87	-0.2
4,736,041	+				-0.6
4,736,041	+				-1.5
4,736,041	+				+0.6
4,736,041	+				+0.2
4,736,041	+				-0.3
4,736,041	+				+0.2
4,736,042	-				-1.3
4,736,049	-				-1.4
4,736,082	+				+0.1
4,736,082	+				+0.7
4,736,083	-				-0.5
4,736,083	-				+0.3
4,736,083	-				+0.5
4,736,083	-				-2.5
4,736,114	+				+1.5
4,736,114	+				+2.1
4,736,114	+				-0.5
4,736,114	+				+0.5
4,736,114	+				+0.4
4,736,115	-				-1.8
4,736,115	-				-0.2
4,736,115	-				-0.0
4,736,115	-				+1.8
4,736,115	-				-0.5
4,736,115	-				+0.7
4,736,227	+		DZA65_RS21905	0.15	-1.4
4,736,227	+		DZA65_RS21905	0.15	+1.1
4,736,227	+		DZA65_RS21905	0.15	-0.6
4,736,227	+		DZA65_RS21905	0.15	+0.3
4,736,227	+		DZA65_RS21905	0.15	+0.0
4,736,227	+		DZA65_RS21905	0.15	-0.7
4,736,227	+		DZA65_RS21905	0.15	+1.5
4,736,228	-		DZA65_RS21905	0.15	-0.2
4,736,228	-		DZA65_RS21905	0.15	+0.1
4,736,228	-		DZA65_RS21905	0.15	+1.1
4,736,228	-		DZA65_RS21905	0.15	-0.0
4,736,228	-		DZA65_RS21905	0.15	-1.3
4,736,228	-		DZA65_RS21905	0.15	+0.8
4,736,312	+		DZA65_RS21905	0.24	+0.1
4,736,312	+		DZA65_RS21905	0.24	-0.6
4,736,313	-		DZA65_RS21905	0.24	+1.4
4,736,314	+		DZA65_RS21905	0.24	-0.2
4,736,314	+		DZA65_RS21905	0.24	+0.8
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4,736,314	+		DZA65_RS21905	0.24	-1.8
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4,737,042	+				-1.9
4,737,042	+				-2.3
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4,737,065	+				+0.1
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4,737,065	+				+0.2
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4,737,071	+				-0.6
4,737,071	+				-0.2
4,737,072	-				-0.1
4,737,072	-				+1.1