Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21875

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,729,383	+		DZA65_RS21870	0.63	-0.6
4,729,485	+		DZA65_RS21870	0.67	+1.1
4,729,485	+		DZA65_RS21870	0.67	-1.9
4,729,485	+		DZA65_RS21870	0.67	-1.5
4,729,486	-		DZA65_RS21870	0.67	-1.4
4,729,486	-		DZA65_RS21870	0.67	-0.9
4,729,618	+		DZA65_RS21870	0.72	-0.3
4,729,618	+		DZA65_RS21870	0.72	-0.6
4,729,618	+		DZA65_RS21870	0.72	+0.4
4,729,802	+		DZA65_RS21870	0.80	-0.0
4,729,802	+		DZA65_RS21870	0.80	+0.1
4,729,802	+		DZA65_RS21870	0.80	-0.9
4,729,802	+		DZA65_RS21870	0.80	-0.2
4,729,803	-		DZA65_RS21870	0.80	-0.2
4,729,803	-		DZA65_RS21870	0.80	+1.9
4,729,803	-		DZA65_RS21870	0.80	-0.2
4,729,803	-		DZA65_RS21870	0.80	-1.5
4,729,803	-		DZA65_RS21870	0.80	+1.5
4,729,922	+		DZA65_RS21870	0.85	+1.6
4,729,922	+		DZA65_RS21870	0.85	-0.2
4,729,922	+		DZA65_RS21870	0.85	-2.3
4,729,922	+		DZA65_RS21870	0.85	-0.5
4,729,923	-		DZA65_RS21870	0.85	+0.3
4,729,923	-		DZA65_RS21870	0.85	-0.1
4,730,477	+				-2.6
4,730,477	+				+0.2
4,730,478	-				+0.1
4,730,478	-				-0.6
4,730,478	-				+0.1
4,730,515	+				-0.5
4,730,516	-				-1.6
4,730,710	-		DZA65_RS21875	0.19	+1.0
4,730,710	-		DZA65_RS21875	0.19	-0.0
4,730,844	+		DZA65_RS21875	0.25	+0.3
4,730,844	+		DZA65_RS21875	0.25	+0.1
4,730,844	+		DZA65_RS21875	0.25	-0.9
4,730,844	+		DZA65_RS21875	0.25	-0.4
4,730,844	+		DZA65_RS21875	0.25	-0.9
4,730,844	+		DZA65_RS21875	0.25	-1.3
4,730,844	+		DZA65_RS21875	0.25	+0.9
4,730,844	+		DZA65_RS21875	0.25	-0.5
4,730,845	-		DZA65_RS21875	0.25	-0.5
4,730,845	-		DZA65_RS21875	0.25	-2.3
4,730,845	-		DZA65_RS21875	0.25	+3.4
4,730,845	-		DZA65_RS21875	0.25	+1.1
4,730,845	-		DZA65_RS21875	0.25	-0.6
4,730,845	-		DZA65_RS21875	0.25	+0.4
4,730,862	+		DZA65_RS21875	0.26	-0.9
4,730,862	+		DZA65_RS21875	0.26	+0.1
4,730,862	+		DZA65_RS21875	0.26	+0.7
4,730,862	+		DZA65_RS21875	0.26	-2.1
4,730,862	+		DZA65_RS21875	0.26	+1.7
4,730,862	+		DZA65_RS21875	0.26	-1.2
4,730,863	-		DZA65_RS21875	0.26	-1.9
4,730,863	-		DZA65_RS21875	0.26	-1.5
4,730,863	-		DZA65_RS21875	0.26	-1.0
4,730,863	-		DZA65_RS21875	0.26	-0.2
4,730,863	-		DZA65_RS21875	0.26	-0.9
4,730,887	+		DZA65_RS21875	0.27	-0.9
4,730,888	-		DZA65_RS21875	0.27	-0.9
4,731,040	+		DZA65_RS21875	0.35	+1.3
4,731,040	+				+0.1
4,731,041	-		DZA65_RS21875	0.35	-1.0
4,731,069	+		DZA65_RS21875	0.36	+1.1
4,731,069	+		DZA65_RS21875	0.36	+2.2
4,731,123	+		DZA65_RS21875	0.38	+0.9
4,731,123	+		DZA65_RS21875	0.38	-0.5
4,731,123	+		DZA65_RS21875	0.38	-2.2
4,731,123	+		DZA65_RS21875	0.38	+0.1
4,731,123	+		DZA65_RS21875	0.38	-0.2
4,731,124	-		DZA65_RS21875	0.39	+0.9
4,731,184	+		DZA65_RS21875	0.41	-1.2
4,731,184	+		DZA65_RS21875	0.41	+0.1
4,731,184	+		DZA65_RS21875	0.41	-1.5
4,731,184	+		DZA65_RS21875	0.41	-0.3
4,731,184	+				+0.1
4,731,184	+		DZA65_RS21875	0.41	-0.7
4,731,184	+		DZA65_RS21875	0.41	+0.3
4,731,185	-		DZA65_RS21875	0.41	-0.5
4,731,185	-		DZA65_RS21875	0.41	+0.1
4,731,185	-		DZA65_RS21875	0.41	+0.3
4,731,185	-		DZA65_RS21875	0.41	-2.3
4,731,187	+		DZA65_RS21875	0.42	-0.2
4,731,187	+		DZA65_RS21875	0.42	+0.3
4,731,188	-		DZA65_RS21875	0.42	+1.2
4,731,188	-		DZA65_RS21875	0.42	+0.9
4,731,188	-		DZA65_RS21875	0.42	+2.9
4,731,207	+		DZA65_RS21875	0.43	+2.1
4,731,208	-		DZA65_RS21875	0.43	+1.7
4,731,208	-		DZA65_RS21875	0.43	+1.0
4,731,208	-		DZA65_RS21875	0.43	+0.0
4,731,208	-		DZA65_RS21875	0.43	+0.3
4,731,276	+		DZA65_RS21875	0.46	-1.2
4,731,276	+		DZA65_RS21875	0.46	+0.1
4,731,276	+		DZA65_RS21875	0.46	+1.0
4,731,276	+		DZA65_RS21875	0.46	+0.3
4,731,277	-		DZA65_RS21875	0.46	+0.2
4,731,277	-		DZA65_RS21875	0.46	+0.6
4,731,277	-		DZA65_RS21875	0.46	+0.1
4,731,601	-		DZA65_RS21875	0.61	-0.3
4,731,669	+		DZA65_RS21875	0.65	+0.6
4,731,669	+		DZA65_RS21875	0.65	+0.8
4,731,669	+		DZA65_RS21875	0.65	+0.2
4,731,669	+		DZA65_RS21875	0.65	+0.2
4,731,670	-		DZA65_RS21875	0.65	-0.3
4,731,670	-		DZA65_RS21875	0.65	+1.1
4,731,670	-		DZA65_RS21875	0.65	+0.2
4,731,675	+		DZA65_RS21875	0.65	-0.9
4,731,675	+		DZA65_RS21875	0.65	+1.1
4,731,675	+		DZA65_RS21875	0.65	+3.0
4,731,675	+		DZA65_RS21875	0.65	+1.0
4,731,675	+		DZA65_RS21875	0.65	+0.7
4,731,675	+		DZA65_RS21875	0.65	+2.3
4,731,676	-		DZA65_RS21875	0.65	-0.5
4,731,856	+		DZA65_RS21875	0.74	-0.2
4,731,856	+		DZA65_RS21875	0.74	+1.4
4,731,856	+		DZA65_RS21875	0.74	+0.9
4,731,856	+		DZA65_RS21875	0.74	-1.0
4,731,856	+		DZA65_RS21875	0.74	+0.9
4,731,856	+		DZA65_RS21875	0.74	-0.6
4,731,856	+		DZA65_RS21875	0.74	+3.4
4,731,856	+		DZA65_RS21875	0.74	-2.0
4,731,856	+		DZA65_RS21875	0.74	+0.4
4,731,856	+		DZA65_RS21875	0.74	+0.5
4,731,857	-		DZA65_RS21875	0.74	+1.1
4,731,857	-		DZA65_RS21875	0.74	+0.1
4,731,857	-		DZA65_RS21875	0.74	-0.3
4,731,857	-		DZA65_RS21875	0.74	+0.7
4,731,857	-		DZA65_RS21875	0.74	-0.6
4,731,858	+		DZA65_RS21875	0.74	+1.1
4,731,858	+		DZA65_RS21875	0.74	-0.9
4,731,858	+		DZA65_RS21875	0.74	+0.9
4,731,859	-		DZA65_RS21875	0.74	-3.4
4,731,859	-		DZA65_RS21875	0.74	-1.7
4,731,859	-		DZA65_RS21875	0.74	+0.3
4,731,921	+		DZA65_RS21875	0.77	-1.7
4,731,922	-		DZA65_RS21875	0.77	-1.5
4,731,922	-		DZA65_RS21875	0.77	-1.1
4,731,922	-		DZA65_RS21875	0.77	-1.7
4,731,973	+		DZA65_RS21875	0.79	-0.2
4,731,974	-		DZA65_RS21875	0.79	-1.7
4,731,974	-		DZA65_RS21875	0.79	-0.9
4,732,000	+		DZA65_RS21875	0.80	-0.7
4,732,002	+		DZA65_RS21875	0.81	-1.3
4,732,002	+		DZA65_RS21875	0.81	-0.5
4,732,002	+		DZA65_RS21875	0.81	-1.2
4,732,003	-		DZA65_RS21875	0.81	-1.7
4,732,003	-				-1.2
4,732,003	-		DZA65_RS21875	0.81	-0.2
4,732,003	-		DZA65_RS21875	0.81	-0.4
4,732,003	-		DZA65_RS21875	0.81	+2.1
4,732,003	-		DZA65_RS21875	0.81	-1.5
4,732,003	-		DZA65_RS21875	0.81	-2.2
4,732,003	-		DZA65_RS21875	0.81	-0.0
4,732,012	+		DZA65_RS21875	0.81	+0.8
4,732,014	+		DZA65_RS21875	0.81	+0.6
4,732,014	+		DZA65_RS21875	0.81	-2.7
4,732,014	+		DZA65_RS21875	0.81	+1.5
4,732,014	+				+0.5
4,732,014	+		DZA65_RS21875	0.81	-0.1
4,732,014	+		DZA65_RS21875	0.81	-0.3
4,732,014	+		DZA65_RS21875	0.81	+0.4
4,732,014	+		DZA65_RS21875	0.81	-0.7
4,732,014	+		DZA65_RS21875	0.81	-0.5
4,732,014	+		DZA65_RS21875	0.81	+0.3
4,732,014	+		DZA65_RS21875	0.81	+0.3
4,732,014	+		DZA65_RS21875	0.81	+3.0
4,732,014	+		DZA65_RS21875	0.81	-0.1
4,732,014	+		DZA65_RS21875	0.81	+0.1
4,732,014	+		DZA65_RS21875	0.81	-1.1
4,732,014	+		DZA65_RS21875	0.81	+1.1
4,732,014	+		DZA65_RS21875	0.81	+0.3
4,732,014	+		DZA65_RS21875	0.81	-1.0
4,732,014	+		DZA65_RS21875	0.81	+0.1
4,732,014	+		DZA65_RS21875	0.81	+0.9
4,732,014	+		DZA65_RS21875	0.81	+0.7
4,732,014	+		DZA65_RS21875	0.81	+0.0
4,732,014	+		DZA65_RS21875	0.81	-0.5
4,732,014	+		DZA65_RS21875	0.81	+0.7
4,732,014	+		DZA65_RS21875	0.81	+2.7
4,732,014	+		DZA65_RS21875	0.81	-0.1
4,732,014	+		DZA65_RS21875	0.81	+0.1
4,732,014	+		DZA65_RS21875	0.81	-0.0
4,732,014	+		DZA65_RS21875	0.81	+0.5
4,732,014	+		DZA65_RS21875	0.81	+0.1
4,732,014	+		DZA65_RS21875	0.81	+0.4
4,732,014	+		DZA65_RS21875	0.81	+0.2
4,732,014	+		DZA65_RS21875	0.81	+0.6
4,732,014	+		DZA65_RS21875	0.81	+1.0
4,732,014	+		DZA65_RS21875	0.81	+0.2
4,732,014	+		DZA65_RS21875	0.81	-1.5
4,732,014	+		DZA65_RS21875	0.81	-0.3
4,732,015	-		DZA65_RS21875	0.81	+1.1
4,732,015	-		DZA65_RS21875	0.81	-0.3
4,732,015	-		DZA65_RS21875	0.81	-0.5
4,732,015	-		DZA65_RS21875	0.81	-0.9
4,732,015	-		DZA65_RS21875	0.81	+0.4
4,732,015	-		DZA65_RS21875	0.81	-0.3
4,732,015	-		DZA65_RS21875	0.81	-0.4
4,732,015	-		DZA65_RS21875	0.81	+0.3
4,732,015	-		DZA65_RS21875	0.81	+1.5
4,732,015	-		DZA65_RS21875	0.81	+0.4
4,732,015	-		DZA65_RS21875	0.81	+0.5
4,732,015	-		DZA65_RS21875	0.81	-0.6
4,732,015	-		DZA65_RS21875	0.81	+1.1
4,732,015	-		DZA65_RS21875	0.81	+0.7
4,732,015	-		DZA65_RS21875	0.81	+0.4
4,732,015	-		DZA65_RS21875	0.81	+0.2
4,732,015	-		DZA65_RS21875	0.81	+0.5
4,732,015	-		DZA65_RS21875	0.81	+1.1
4,732,015	-		DZA65_RS21875	0.81	+0.2
4,732,015	-		DZA65_RS21875	0.81	-1.7
4,732,015	-		DZA65_RS21875	0.81	+0.1
4,732,015	-		DZA65_RS21875	0.81	-0.2
4,732,015	-		DZA65_RS21875	0.81	+0.5
4,732,015	-		DZA65_RS21875	0.81	-0.0
4,732,015	-		DZA65_RS21875	0.81	-1.1
4,732,015	-		DZA65_RS21875	0.81	-0.5
4,732,015	-		DZA65_RS21875	0.81	-1.0
4,732,015	-		DZA65_RS21875	0.81	-1.2
4,732,015	-		DZA65_RS21875	0.81	+1.1
4,732,015	-		DZA65_RS21875	0.81	+1.6
4,732,015	-		DZA65_RS21875	0.81	-0.3
4,732,015	-		DZA65_RS21875	0.81	+1.3
4,732,015	-		DZA65_RS21875	0.81	-2.0
4,732,015	-		DZA65_RS21875	0.81	-0.5
4,732,015	-		DZA65_RS21875	0.81	+0.1
4,732,015	-		DZA65_RS21875	0.81	+0.4
4,732,015	-		DZA65_RS21875	0.81	-0.3
4,732,015	-		DZA65_RS21875	0.81	-0.3
4,732,015	-		DZA65_RS21875	0.81	-1.5
4,732,015	-		DZA65_RS21875	0.81	+0.1
4,732,015	-		DZA65_RS21875	0.81	-1.9
4,732,015	-		DZA65_RS21875	0.81	+1.1
4,732,015	-		DZA65_RS21875	0.81	-0.0
4,732,015	-		DZA65_RS21875	0.81	+1.5
4,732,015	-		DZA65_RS21875	0.81	+1.1
4,732,015	-		DZA65_RS21875	0.81	-2.7
4,732,015	-		DZA65_RS21875	0.81	-1.5
4,732,015	-		DZA65_RS21875	0.81	+0.5
4,732,100	+		DZA65_RS21875	0.85	-0.8
4,732,100	+		DZA65_RS21875	0.85	-1.2
4,732,100	+		DZA65_RS21875	0.85	+2.9
4,732,100	+		DZA65_RS21875	0.85	+0.4
4,732,100	+		DZA65_RS21875	0.85	-2.3
4,732,100	+		DZA65_RS21875	0.85	-0.9
4,732,101	-		DZA65_RS21875	0.85	+1.9
4,732,101	-		DZA65_RS21875	0.85	-0.5
4,732,103	+		DZA65_RS21875	0.85	+1.1
4,732,103	+		DZA65_RS21875	0.85	-1.2
4,732,103	+		DZA65_RS21875	0.85	-0.0
4,732,103	+		DZA65_RS21875	0.85	-0.2
4,732,104	-		DZA65_RS21875	0.85	-0.7
4,732,122	+		DZA65_RS21875	0.86	-1.2
4,732,122	+		DZA65_RS21875	0.86	-0.5
4,732,122	+		DZA65_RS21875	0.86	-0.5
4,732,122	+		DZA65_RS21875	0.86	+1.1
4,732,122	+		DZA65_RS21875	0.86	+1.1
4,732,122	+		DZA65_RS21875	0.86	+0.5
4,732,123	-		DZA65_RS21875	0.86	-0.6
4,732,123	-		DZA65_RS21875	0.86	+3.2
4,732,123	-		DZA65_RS21875	0.86	-0.7
4,732,123	-		DZA65_RS21875	0.86	+0.0
4,732,123	-		DZA65_RS21875	0.86	-1.2
4,732,123	-		DZA65_RS21875	0.86	-1.0
4,732,136	-		DZA65_RS21875	0.87	-1.5
4,732,140	-		DZA65_RS21875	0.87	-0.2
4,732,174	+		DZA65_RS21875	0.89	-1.0
4,732,175	-		DZA65_RS21875	0.89	-0.9
4,732,203	+				-1.5
4,732,205	+				-1.5
4,732,205	+				+0.2
4,732,205	+				+0.8
4,732,205	+				+0.7
4,732,205	+				+0.5
4,732,205	+				-0.3
4,732,205	+				+1.1
4,732,205	+				+1.2
4,732,205	+				+0.2
4,732,205	+				+0.1
4,732,205	+				-1.2
4,732,205	+				-0.5
4,732,206	-				+1.6
4,732,206	-				+1.7
4,732,206	-				-1.1
4,732,206	-				-2.1
4,732,206	-				-0.3
4,732,206	-				-0.5
4,732,206	-				-1.0
4,732,206	-				-0.7
4,732,206	-				-0.9
4,732,206	-				-1.0
4,732,206	-				-0.6
4,732,206	-				+1.6
4,732,206	-				+0.9
4,732,206	-				+2.4
4,732,206	-				+1.9
4,732,206	-				-1.3
4,732,206	-				+0.7
4,732,207	+				+0.5
4,732,207	+				-0.2
4,732,207	+				-0.2
4,732,207	+				+0.8
4,732,207	+				-1.6
4,732,207	+				+1.1
4,732,207	+				-2.2
4,732,207	+				+0.0
4,732,207	+				+1.5
4,732,207	+				+0.7
4,732,207	+				-0.3
4,732,207	+				+0.9
4,732,207	+				+0.9
4,732,208	-				-1.7
4,732,208	-				+0.1
4,732,208	-				+0.5
4,732,208	-				-0.2
4,732,208	-				+0.6
4,732,208	-				+0.1
4,732,208	-				+0.0
4,732,208	-				-0.5
4,732,208	-				-1.6
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