Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21845

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,718,046	+		DZA65_RS21835	0.48	+0.3
4,718,047	-		DZA65_RS21835	0.48	+1.1
4,718,047	-		DZA65_RS21835	0.48	+0.3
4,718,069	+		DZA65_RS21835	0.50	+0.4
4,718,070	-		DZA65_RS21835	0.50	-1.9
4,718,145	+		DZA65_RS21835	0.58	-0.2
4,718,160	-		DZA65_RS21835	0.59	+2.0
4,718,177	+		DZA65_RS21835	0.61	-0.0
4,718,191	+		DZA65_RS21835	0.62	-0.5
4,718,202	-		DZA65_RS21835	0.63	-0.0
4,718,226	+		DZA65_RS21835	0.66	+0.5
4,718,226	+		DZA65_RS21835	0.66	-0.8
4,718,226	+		DZA65_RS21835	0.66	+1.7
4,718,227	-		DZA65_RS21835	0.66	+0.1
4,718,242	+		DZA65_RS21835	0.67	+0.4
4,718,243	-		DZA65_RS21835	0.67	-0.3
4,718,243	-		DZA65_RS21835	0.67	-0.5
4,718,243	-		DZA65_RS21835	0.67	+0.7
4,718,243	-		DZA65_RS21835	0.67	+1.3
4,718,261	+		DZA65_RS21835	0.69	+1.9
4,718,274	+		DZA65_RS21835	0.70	+0.1
4,718,274	+		DZA65_RS21835	0.70	+0.8
4,718,274	+		DZA65_RS21835	0.70	-0.1
4,718,274	+		DZA65_RS21835	0.70	+0.8
4,718,274	+		DZA65_RS21835	0.70	+2.1
4,718,275	-		DZA65_RS21835	0.70	-0.4
4,718,275	-		DZA65_RS21835	0.70	+0.8
4,718,309	+		DZA65_RS21835	0.74	-0.5
4,718,310	-		DZA65_RS21835	0.74	+1.3
4,718,319	-		DZA65_RS21835	0.74	-1.9
4,718,319	-		DZA65_RS21835	0.74	-0.6
4,718,366	-		DZA65_RS21835	0.79	+0.8
4,718,411	+		DZA65_RS21835	0.83	-0.0
4,718,428	+		DZA65_RS21835	0.85	+0.6
4,718,563	+				+0.9
4,718,563	+				+0.9
4,718,563	+				+0.5
4,718,568	-				-1.5
4,718,580	+				+0.0
4,718,580	+				+0.5
4,718,581	-				-0.1
4,718,644	+				-0.0
4,718,644	+				-0.1
4,718,645	-				+1.1
4,718,645	-				+2.9
4,718,660	+		DZA65_RS21840	0.15	-0.8
4,718,660	+		DZA65_RS21840	0.15	-2.8
4,718,661	-		DZA65_RS21840	0.15	+0.6
4,718,690	-		DZA65_RS21840	0.39	+0.1
4,718,725	-		DZA65_RS21840	0.67	-1.3
4,718,725	-		DZA65_RS21840	0.67	+1.7
4,718,732	+		DZA65_RS21840	0.73	+0.9
4,718,732	+		DZA65_RS21840	0.73	-2.3
4,718,732	+		DZA65_RS21840	0.73	-0.3
4,718,732	+		DZA65_RS21840	0.73	-1.5
4,718,732	+		DZA65_RS21840	0.73	-0.9
4,718,732	+		DZA65_RS21840	0.73	-0.9
4,718,732	+		DZA65_RS21840	0.73	+0.1
4,718,733	-		DZA65_RS21840	0.73	-1.0
4,718,733	-		DZA65_RS21840	0.73	+0.3
4,718,733	-		DZA65_RS21840	0.73	-0.5
4,718,733	-		DZA65_RS21840	0.73	+0.4
4,718,733	-		DZA65_RS21840	0.73	-0.0
4,718,733	-		DZA65_RS21840	0.73	-1.0
4,718,738	+		DZA65_RS21840	0.77	+1.3
4,718,738	+		DZA65_RS21840	0.77	-0.2
4,718,738	+		DZA65_RS21840	0.77	-0.5
4,718,739	-		DZA65_RS21840	0.78	+1.1
4,718,739	-		DZA65_RS21840	0.78	+0.1
4,718,759	-				-0.9
4,718,781	-				-0.2
4,718,781	-				-0.3
4,718,793	+				+0.7
4,718,793	+				-1.9
4,718,793	+				+0.5
4,718,793	+				+2.4
4,718,794	-				+1.7
4,718,794	-				+0.0
4,718,794	-				+0.5
4,718,794	-				-0.7
4,718,794	-				-0.2
4,718,794	-				-0.6
4,718,794	-				-0.5
4,718,794	-				-0.9
4,718,794	-				-0.3
4,718,798	+				+0.3
4,718,798	+				-0.9
4,718,798	+				-0.5
4,718,798	+				+1.5
4,718,798	+				+0.0
4,718,798	+				+0.1
4,718,798	+				+1.9
4,718,798	+				+0.4
4,718,798	+				+0.8
4,718,798	+				-0.2
4,718,798	+				+0.3
4,718,798	+				+0.2
4,718,798	+				+1.6
4,718,798	+				-1.3
4,718,799	-				+0.6
4,718,799	-				-3.0
4,718,799	-				-0.7
4,718,799	-				-0.5
4,718,799	-				+0.4
4,718,799	-				+0.5
4,718,799	-				-0.3
4,718,799	-				+0.3
4,718,799	-				-0.7
4,718,802	+				-1.3
4,718,802	+				-1.6
4,718,802	+				+0.7
4,718,802	+				-0.5
4,718,802	+				-2.2
4,718,802	+				-0.3
4,718,802	+				+0.2
4,718,802	+				+0.6
4,718,802	+				-1.3
4,718,802	+				-0.8
4,718,802	+				-1.7
4,718,802	+				-0.8
4,718,802	+				+1.7
4,718,803	-				-1.1
4,718,803	-				-0.7
4,718,803	-				-0.0
4,718,803	-				-0.4
4,718,803	-				-1.7
4,718,803	-				-0.6
4,718,803	-				+0.5
4,718,803	-				-1.5
4,718,803	-				+0.1
4,718,803	-				-0.9
4,718,803	-				-0.7
4,718,803	-				-0.9
4,718,803	-				+2.9
4,718,830	+				-0.3
4,718,831	-				-0.1
4,718,831	-				-0.6
4,718,856	+				+0.1
4,718,856	+				-1.2
4,718,856	+				-0.0
4,718,856	+				-1.3
4,718,856	+				+0.5
4,718,856	+				-0.2
4,718,857	-				+0.1
4,718,857	-				+0.8
4,718,857	-				-1.6
4,718,857	-				+1.9
4,718,985	+		DZA65_RS21845	0.13	-0.9
4,718,985	+		DZA65_RS21845	0.13	-0.1
4,718,985	+		DZA65_RS21845	0.13	-0.5
4,718,985	+		DZA65_RS21845	0.13	+0.1
4,718,985	+		DZA65_RS21845	0.13	-0.5
4,718,985	+		DZA65_RS21845	0.13	-2.2
4,718,985	+		DZA65_RS21845	0.13	-0.7
4,718,985	+		DZA65_RS21845	0.13	+0.5
4,718,986	-		DZA65_RS21845	0.13	-0.6
4,718,986	-		DZA65_RS21845	0.13	-0.6
4,718,986	-		DZA65_RS21845	0.13	-1.5
4,718,986	-		DZA65_RS21845	0.13	-1.7
4,719,006	+		DZA65_RS21845	0.14	-1.2
4,719,007	-		DZA65_RS21845	0.14	-0.2
4,719,071	-		DZA65_RS21845	0.19	-1.9
4,719,090	+		DZA65_RS21845	0.20	+0.1
4,719,090	+		DZA65_RS21845	0.20	-0.8
4,719,090	+		DZA65_RS21845	0.20	-0.5
4,719,090	+		DZA65_RS21845	0.20	-0.8
4,719,090	+		DZA65_RS21845	0.20	+0.5
4,719,090	+		DZA65_RS21845	0.20	-0.6
4,719,090	+		DZA65_RS21845	0.20	-0.7
4,719,090	+		DZA65_RS21845	0.20	-2.2
4,719,091	-		DZA65_RS21845	0.20	-1.0
4,719,091	-		DZA65_RS21845	0.20	+0.1
4,719,091	-		DZA65_RS21845	0.20	+0.7
4,719,091	-		DZA65_RS21845	0.20	-0.1
4,719,267	+		DZA65_RS21845	0.32	-1.0
4,719,267	+		DZA65_RS21845	0.32	-2.6
4,719,267	+		DZA65_RS21845	0.32	+2.1
4,719,268	-		DZA65_RS21845	0.32	-0.9
4,719,334	+		DZA65_RS21845	0.37	-1.2
4,719,334	+		DZA65_RS21845	0.37	-1.7
4,719,334	+		DZA65_RS21845	0.37	-1.0
4,719,335	-		DZA65_RS21845	0.37	+1.1
4,719,368	-		DZA65_RS21845	0.39	-1.2
4,719,368	-		DZA65_RS21845	0.39	-1.2
4,719,376	-		DZA65_RS21845	0.39	-0.9
4,719,597	+		DZA65_RS21845	0.55	+0.4
4,719,597	+		DZA65_RS21845	0.55	-1.7
4,719,597	+		DZA65_RS21845	0.55	-2.5
4,719,597	+		DZA65_RS21845	0.55	+0.3
4,719,597	+		DZA65_RS21845	0.55	-0.8
4,719,597	+		DZA65_RS21845	0.55	+0.4
4,719,597	+		DZA65_RS21845	0.55	+0.1
4,719,597	+		DZA65_RS21845	0.55	-1.0
4,719,597	+		DZA65_RS21845	0.55	+0.5
4,719,598	-		DZA65_RS21845	0.55	+2.0
4,719,598	-		DZA65_RS21845	0.55	-0.5
4,719,598	-		DZA65_RS21845	0.55	-0.0
4,719,598	-		DZA65_RS21845	0.55	-0.7
4,719,598	-		DZA65_RS21845	0.55	-1.5
4,719,598	-		DZA65_RS21845	0.55	-0.3
4,719,598	-		DZA65_RS21845	0.55	+0.5
4,719,598	-		DZA65_RS21845	0.55	-1.2
4,719,598	-		DZA65_RS21845	0.55	-0.9
4,719,598	-		DZA65_RS21845	0.55	-0.5
4,719,598	-		DZA65_RS21845	0.55	-0.5
4,719,598	-		DZA65_RS21845	0.55	+0.5
4,719,598	-		DZA65_RS21845	0.55	-0.7
4,719,598	-		DZA65_RS21845	0.55	+1.4
4,719,598	-		DZA65_RS21845	0.55	-0.2
4,719,598	-		DZA65_RS21845	0.55	-0.5
4,719,621	+		DZA65_RS21845	0.56	-2.6
4,719,622	-		DZA65_RS21845	0.56	+0.6
4,719,634	-		DZA65_RS21845	0.57	-1.9
4,719,634	-		DZA65_RS21845	0.57	+1.7
4,719,636	+		DZA65_RS21845	0.57	+0.1
4,719,636	+		DZA65_RS21845	0.57	-0.6
4,719,636	+		DZA65_RS21845	0.57	-2.6
4,719,636	+		DZA65_RS21845	0.57	-0.8
4,719,636	+		DZA65_RS21845	0.57	-0.3
4,719,636	+		DZA65_RS21845	0.57	-0.2
4,719,636	+		DZA65_RS21845	0.57	+1.6
4,719,636	+		DZA65_RS21845	0.57	+0.5
4,719,637	-		DZA65_RS21845	0.57	+0.1
4,719,637	-		DZA65_RS21845	0.57	-0.6
4,719,637	-		DZA65_RS21845	0.57	-2.0
4,719,637	-		DZA65_RS21845	0.57	-0.9
4,719,637	-		DZA65_RS21845	0.57	-1.6
4,719,637	-		DZA65_RS21845	0.57	-1.5
4,719,670	+		DZA65_RS21845	0.60	-1.9
4,719,671	-		DZA65_RS21845	0.60	-2.1
4,719,690	+		DZA65_RS21845	0.61	+0.1
4,719,691	-				+0.1
4,719,691	-		DZA65_RS21845	0.61	-1.5
4,719,691	-		DZA65_RS21845	0.61	+0.4
4,719,805	+		DZA65_RS21845	0.69	-0.5
4,719,871	+				+0.1
4,719,875	-		DZA65_RS21845	0.74	-0.2
4,719,891	+		DZA65_RS21845	0.75	-0.1
4,719,891	+		DZA65_RS21845	0.75	-0.9
4,719,891	+		DZA65_RS21845	0.75	-1.5
4,719,891	+		DZA65_RS21845	0.75	-0.3
4,719,891	+		DZA65_RS21845	0.75	-0.4
4,719,891	+		DZA65_RS21845	0.75	+0.7
4,719,891	+		DZA65_RS21845	0.75	-1.0
4,719,891	+		DZA65_RS21845	0.75	-1.5
4,719,891	+		DZA65_RS21845	0.75	-0.7
4,719,891	+		DZA65_RS21845	0.75	-0.3
4,719,891	+		DZA65_RS21845	0.75	-0.3
4,719,892	-		DZA65_RS21845	0.75	-0.6
4,719,892	-		DZA65_RS21845	0.75	-1.5
4,719,892	-		DZA65_RS21845	0.75	+0.1
4,719,892	-		DZA65_RS21845	0.75	-1.2
4,719,892	-		DZA65_RS21845	0.75	+0.3
4,719,892	-		DZA65_RS21845	0.75	-0.3
4,719,898	+		DZA65_RS21845	0.75	+0.6
4,719,898	+		DZA65_RS21845	0.75	+0.3
4,719,898	+		DZA65_RS21845	0.75	-1.1
4,719,899	-		DZA65_RS21845	0.75	-0.5
4,719,899	-		DZA65_RS21845	0.75	-0.9
4,719,906	+		DZA65_RS21845	0.76	-1.7
4,719,906	+		DZA65_RS21845	0.76	-0.1
4,719,907	-		DZA65_RS21845	0.76	+2.7
4,720,069	+		DZA65_RS21845	0.87	+0.3
4,720,070	-		DZA65_RS21845	0.87	-1.0
4,720,070	-		DZA65_RS21845	0.87	-0.3
4,720,070	-		DZA65_RS21845	0.87	-0.5
4,720,070	-		DZA65_RS21845	0.87	-0.3
4,720,082	+		DZA65_RS21845	0.88	+0.1
4,720,082	+		DZA65_RS21845	0.88	+0.4
4,720,082	+				+0.7
4,720,083	-		DZA65_RS21845	0.88	+0.5
4,720,132	+				-0.6
4,720,133	-				-1.9
4,720,133	-				+0.1
4,720,133	-				+1.1
4,720,178	+				-0.5
4,720,178	+				+0.0
4,720,178	+				-1.5
4,720,178	+				-2.5
4,720,179	-				-1.2
4,720,179	-				-0.9
4,720,179	-				+1.7
4,720,268	+				-0.4
4,720,269	-				+0.5
4,720,274	-				-0.6
4,720,287	+				-0.0
4,720,287	+				-0.6
4,720,287	+				-0.5
4,720,288	-				+0.1
4,720,288	-				-1.0
4,720,288	-				-0.9
4,720,288	-				-1.9
4,720,288	-				+0.2
4,720,292	+				+0.1
4,720,292	+				-0.4
4,720,292	+				-0.3
4,720,292	+				-0.5
4,720,293	-				-0.5
4,720,293	-				+0.1
4,720,293	-				+0.8
4,720,293	-				+0.5
4,720,293	-				-0.0
4,720,338	+				+0.2
4,720,338	+				+1.7
4,720,338	+				-0.2
4,720,339	-				+1.1
4,720,340	+				-0.8
4,720,341	-				+0.9
4,720,341	-				+0.8
4,720,341	-				-0.1
4,720,422	+				+2.8
4,720,422	+				-1.5
4,720,422	+				-0.1
4,720,422	+				-1.1
4,720,423	-				-0.9
4,720,423	-				-0.5
4,720,423	-				-0.3
4,720,423	-				+1.6
4,720,423	-				+1.7
4,720,423	-				-0.8
4,720,423	-				+2.7
4,720,423	-				-0.1
4,720,484	+				-0.1
4,720,484	+				-0.6
4,720,485	-				+0.1
4,720,485	-				-1.1
4,720,493	-				+0.5
4,720,494	+				-0.2
4,720,494	+				-0.6
4,720,495	-				-0.9
4,720,495	-				-0.2
4,720,506	+				-2.0
4,720,506	+				-1.2
4,720,506	+				+0.4
4,720,506	+				+0.4
4,720,525	+				+1.1
4,720,525	+				-0.9
4,720,525	+				+1.2
4,720,525	+				-0.9
4,720,525	+				-0.1
4,720,526	-				-0.2
4,720,555	+				-0.9
4,720,555	+				-0.5
4,720,556	-				+0.2
4,720,556	-				+0.1
4,720,584	+				-0.1
4,720,609	+				-0.7
4,720,630	+				+0.8
4,720,630	+				+0.4
4,720,630	+				-0.5
4,720,631	-				-0.9
4,720,688	+				+0.1
4,720,689	-				-0.6
4,720,689	-				+0.4
4,720,770	+				-0.5
4,720,770	+				+0.4
4,720,771	-				+0.5
4,720,819	-		DZA65_RS21850	0.10	-1.3
4,720,923	+		DZA65_RS21850	0.18	-1.0
4,720,923	+		DZA65_RS21850	0.18	-0.9
4,720,924	-		DZA65_RS21850	0.18	+1.1
4,720,924	-		DZA65_RS21850	0.18	-1.2
4,720,987	+		DZA65_RS21850	0.23	+0.3
4,720,987	+		DZA65_RS21850	0.23	-0.6
4,720,988	-		DZA65_RS21850	0.23	-0.9
4,721,054	+		DZA65_RS21850	0.28	+0.1
4,721,054	+		DZA65_RS21850	0.28	-0.6
4,721,054	+		DZA65_RS21850	0.28	-2.5
4,721,055	-		DZA65_RS21850	0.28	-1.2
4,721,085	-		DZA65_RS21850	0.31	+0.1
4,721,085	-		DZA65_RS21850	0.31	+1.7
4,721,151	+		DZA65_RS21850	0.36	-2.0
4,721,152	-		DZA65_RS21850	0.36	+1.9
4,721,152	-		DZA65_RS21850	0.36	+3.9
4,721,189	-		DZA65_RS21850	0.39	+0.1
4,721,213	+				+0.1
4,721,213	+		DZA65_RS21850	0.41	-0.5
4,721,214	-		DZA65_RS21850	0.41	+0.7
4,721,256	+		DZA65_RS21850	0.44	-0.9