Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20675

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,458,435	+		DZA65_RS20670	0.12	+0.4
4,458,449	+		DZA65_RS20670	0.17	-0.9
4,458,493	-		DZA65_RS20670	0.31	-0.9
4,458,496	+		DZA65_RS20670	0.31	+0.2
4,458,554	+		DZA65_RS20670	0.50	+1.1
4,458,663	+		DZA65_RS20670	0.84	+0.4
4,458,727	+				+0.5
4,458,727	+				-0.5
4,458,727	+				-0.1
4,458,727	+				-0.5
4,458,728	-				+1.6
4,458,728	-				+1.5
4,458,728	-				+0.2
4,458,777	+				+1.2
4,458,810	-				+1.3
4,458,814	-				-0.2
4,458,852	+				+0.4
4,458,860	-				+0.6
4,458,864	-				+2.1
4,458,864	-				+2.5
4,458,870	+				+0.1
4,458,871	-				-0.1
4,458,888	+				-0.3
4,458,916	+				+0.1
4,458,927	-				+0.4
4,458,938	+				-0.5
4,458,939	-				+1.1
4,458,950	-				-0.7
4,458,994	-				-0.5
4,459,145	+				+0.3
4,459,145	+				+2.3
4,459,146	-				+0.3
4,459,161	+				-0.4
4,459,161	+				-0.6
4,459,161	+				+0.1
4,459,161	+				+0.4
4,459,161	+				+2.2
4,459,161	+				-0.7
4,459,161	+				+2.5
4,459,162	-				-1.7
4,459,162	-				-1.2
4,459,162	-				-0.8
4,459,162	-				-0.2
4,459,162	-				-0.5
4,459,167	+				+1.4
4,459,167	+				+1.4
4,459,167	+				-1.4
4,459,167	+				+0.4
4,459,168	-				+1.1
4,459,168	-				+0.3
4,459,170	+				+0.9
4,459,170	+				-0.8
4,459,171	-				+0.6
4,459,171	-				-0.3
4,459,194	+				-1.7
4,459,194	+				-2.9
4,459,250	+				+0.8
4,459,250	+				-0.6
4,459,250	+				+1.7
4,459,250	+				+1.6
4,459,251	-				-0.1
4,459,251	-				+1.3
4,459,251	-				-0.2
4,459,251	-				+0.9
4,459,253	+				+0.7
4,459,253	+				-0.7
4,459,253	+				+1.1
4,459,253	+				+0.1
4,459,253	+				-0.5
4,459,253	+				+0.2
4,459,253	+				-0.5
4,459,253	+				-0.3
4,459,253	+				+0.7
4,459,254	-				-0.2
4,459,316	+				-2.0
4,459,317	-				+0.4
4,459,323	-				+0.8
4,459,329	+				-1.5
4,459,329	+				+0.1
4,459,330	-				+0.7
4,459,330	-				-0.7
4,459,330	-				+0.1
4,459,330	-				-0.6
4,459,330	-				+1.7
4,459,442	-				-0.7
4,459,484	+		DZA65_RS20675	0.12	-0.5
4,459,484	+		DZA65_RS20675	0.12	-0.7
4,459,502	+		DZA65_RS20675	0.13	-0.7
4,459,502	+		DZA65_RS20675	0.13	-1.9
4,459,502	+		DZA65_RS20675	0.13	-0.8
4,459,502	+		DZA65_RS20675	0.13	+0.1
4,459,502	+		DZA65_RS20675	0.13	-1.3
4,459,502	+		DZA65_RS20675	0.13	+0.5
4,459,503	-		DZA65_RS20675	0.13	+0.8
4,459,503	-		DZA65_RS20675	0.13	-1.9
4,459,503	-		DZA65_RS20675	0.13	-0.5
4,459,503	-		DZA65_RS20675	0.13	+0.7
4,459,503	-		DZA65_RS20675	0.13	+0.5
4,459,506	+		DZA65_RS20675	0.13	-0.7
4,459,506	+		DZA65_RS20675	0.13	+0.3
4,459,506	+		DZA65_RS20675	0.13	+1.8
4,459,507	-		DZA65_RS20675	0.13	-1.2
4,459,553	+		DZA65_RS20675	0.15	+1.3
4,459,553	+		DZA65_RS20675	0.15	+0.0
4,459,553	+		DZA65_RS20675	0.15	-0.5
4,459,554	-		DZA65_RS20675	0.16	-1.7
4,459,554	-		DZA65_RS20675	0.16	+0.6
4,459,554	-		DZA65_RS20675	0.16	+0.1
4,459,554	-		DZA65_RS20675	0.16	-1.6
4,459,554	-		DZA65_RS20675	0.16	-0.2
4,459,566	+		DZA65_RS20675	0.16	-0.7
4,459,566	+		DZA65_RS20675	0.16	+0.4
4,459,567	-		DZA65_RS20675	0.16	-0.1
4,459,567	-		DZA65_RS20675	0.16	+1.6
4,459,632	+		DZA65_RS20675	0.19	-0.5
4,459,632	+		DZA65_RS20675	0.19	+0.1
4,459,632	+		DZA65_RS20675	0.19	-1.1
4,459,633	-		DZA65_RS20675	0.20	+0.7
4,459,633	-		DZA65_RS20675	0.20	-1.4
4,459,633	-		DZA65_RS20675	0.20	-0.4
4,459,680	+		DZA65_RS20675	0.22	+0.1
4,459,680	+		DZA65_RS20675	0.22	+1.1
4,459,722	+		DZA65_RS20675	0.24	-0.1
4,459,722	+		DZA65_RS20675	0.24	+0.2
4,459,723	-		DZA65_RS20675	0.24	+1.7
4,459,723	-		DZA65_RS20675	0.24	+0.5
4,459,769	+		DZA65_RS20675	0.26	-0.9
4,459,770	-		DZA65_RS20675	0.27	-0.2
4,459,793	+		DZA65_RS20675	0.28	-0.8
4,459,793	+		DZA65_RS20675	0.28	+0.8
4,459,794	-		DZA65_RS20675	0.28	-0.4
4,459,794	-		DZA65_RS20675	0.28	-1.3
4,459,824	+		DZA65_RS20675	0.29	+0.1
4,459,824	+		DZA65_RS20675	0.29	-0.5
4,459,824	+		DZA65_RS20675	0.29	+0.1
4,459,825	-		DZA65_RS20675	0.29	-0.5
4,459,827	+		DZA65_RS20675	0.29	-2.1
4,459,827	+		DZA65_RS20675	0.29	+0.5
4,459,827	+		DZA65_RS20675	0.29	+0.4
4,459,828	-		DZA65_RS20675	0.29	-0.9
4,459,828	-		DZA65_RS20675	0.29	-0.9
4,459,828	-		DZA65_RS20675	0.29	-1.9
4,459,828	-		DZA65_RS20675	0.29	+0.4
4,459,828	-		DZA65_RS20675	0.29	+1.1
4,459,832	+		DZA65_RS20675	0.30	+0.3
4,459,832	+		DZA65_RS20675	0.30	+0.7
4,459,832	+		DZA65_RS20675	0.30	+0.8
4,459,833	-		DZA65_RS20675	0.30	-1.0
4,459,833	-		DZA65_RS20675	0.30	+0.0
4,459,833	-		DZA65_RS20675	0.30	+0.2
4,459,850	-		DZA65_RS20675	0.31	+0.9
4,459,947	+		DZA65_RS20675	0.36	+0.5
4,459,948	-		DZA65_RS20675	0.36	-1.3
4,459,948	-		DZA65_RS20675	0.36	-0.3
4,459,965	+		DZA65_RS20675	0.36	-0.3
4,459,966	-		DZA65_RS20675	0.36	+1.1
4,459,970	+		DZA65_RS20675	0.37	+1.5
4,459,970	+		DZA65_RS20675	0.37	-2.1
4,459,971	-		DZA65_RS20675	0.37	-0.1
4,459,971	-		DZA65_RS20675	0.37	+1.5
4,460,001	-		DZA65_RS20675	0.38	-2.1
4,460,001	-		DZA65_RS20675	0.38	+2.7
4,460,102	+		DZA65_RS20675	0.43	-0.2
4,460,102	+		DZA65_RS20675	0.43	+1.1
4,460,102	+		DZA65_RS20675	0.43	-0.7
4,460,102	+		DZA65_RS20675	0.43	-0.5
4,460,102	+		DZA65_RS20675	0.43	-1.7
4,460,103	-		DZA65_RS20675	0.43	-0.8
4,460,103	-		DZA65_RS20675	0.43	-1.9
4,460,103	-		DZA65_RS20675	0.43	+0.6
4,460,103	-		DZA65_RS20675	0.43	-0.7
4,460,103	-		DZA65_RS20675	0.43	-1.3
4,460,336	+		DZA65_RS20675	0.55	+0.1
4,460,351	-		DZA65_RS20675	0.56	-0.5
4,460,351	-		DZA65_RS20675	0.56	-1.5
4,460,351	-		DZA65_RS20675	0.56	+0.8
4,460,351	-		DZA65_RS20675	0.56	-0.3
4,460,351	-		DZA65_RS20675	0.56	-0.9
4,460,362	+		DZA65_RS20675	0.57	+0.5
4,460,373	+		DZA65_RS20675	0.57	+0.5
4,460,373	+		DZA65_RS20675	0.57	-0.1
4,460,374	-		DZA65_RS20675	0.57	-0.4
4,460,385	-		DZA65_RS20675	0.58	-0.7
4,460,436	+		DZA65_RS20675	0.60	-2.1
4,460,437	-		DZA65_RS20675	0.60	+1.2
4,460,440	-		DZA65_RS20675	0.61	-1.1
4,460,440	-		DZA65_RS20675	0.61	-0.0
4,460,485	+		DZA65_RS20675	0.63	-0.2
4,460,485	+		DZA65_RS20675	0.63	-1.3
4,460,485	+		DZA65_RS20675	0.63	-1.9
4,460,485	+		DZA65_RS20675	0.63	-0.3
4,460,486	-		DZA65_RS20675	0.63	-1.1
4,460,507	-		DZA65_RS20675	0.64	-1.5
4,460,507	-		DZA65_RS20675	0.64	-1.9
4,460,554	+		DZA65_RS20675	0.66	-0.4
4,460,554	+		DZA65_RS20675	0.66	+1.5
4,460,554	+		DZA65_RS20675	0.66	-0.8
4,460,554	+		DZA65_RS20675	0.66	-1.5
4,460,570	+		DZA65_RS20675	0.67	-2.0
4,460,570	+		DZA65_RS20675	0.67	-1.7
4,460,570	+		DZA65_RS20675	0.67	+0.1
4,460,571	-		DZA65_RS20675	0.67	-0.2
4,460,571	-		DZA65_RS20675	0.67	+0.9
4,460,571	-		DZA65_RS20675	0.67	-0.9
4,460,580	+		DZA65_RS20675	0.68	-0.6
4,460,596	+		DZA65_RS20675	0.69	+0.3
4,460,596	+		DZA65_RS20675	0.69	-3.1
4,460,597	-		DZA65_RS20675	0.69	+1.1
4,460,597	-		DZA65_RS20675	0.69	-0.4
4,460,646	+		DZA65_RS20675	0.71	+1.3
4,460,646	+		DZA65_RS20675	0.71	+0.8
4,460,647	-		DZA65_RS20675	0.71	-0.3
4,460,647	-		DZA65_RS20675	0.71	-0.3
4,460,647	-		DZA65_RS20675	0.71	+0.5
4,460,670	+		DZA65_RS20675	0.72	+0.1
4,460,851	-		DZA65_RS20675	0.82	+0.7
4,460,953	-		DZA65_RS20675	0.87	+0.1
4,461,003	+		DZA65_RS20675	0.89	-1.3
4,461,004	-		DZA65_RS20675	0.89	+2.7
4,461,036	+				-1.3
4,461,036	+				+0.1
4,461,036	+				-0.2
4,461,068	-				-0.5
4,461,323	-				-0.3
4,461,457	+				+1.1
4,461,463	-				+0.1
4,461,495	+				+0.1
4,461,498	+				-1.5
4,461,529	-				+0.8
4,461,533	+				+1.9
4,461,539	+				+0.7
4,461,547	-				+0.1
4,461,555	+				-0.4
4,461,588	+				+0.1
4,461,601	+				+0.1
4,461,602	-				-0.7
4,461,681	+				+1.1
4,461,730	+				+2.1
4,461,730	+				+1.1
4,461,730	+				-0.7
4,461,730	+				-1.3
4,461,730	+				+0.2
4,461,730	+				+2.1
4,461,730	+				-1.7
4,461,731	-				+1.1
4,461,731	-				+1.5
4,461,731	-				-0.7
4,461,737	+				+1.1
4,461,737	+				+0.5
4,461,738	-				-0.4
4,461,768	-		DZA65_RS20680	0.11	-0.1
4,461,779	+		DZA65_RS20680	0.13	-0.7
4,461,779	+		DZA65_RS20680	0.13	-0.2
4,461,780	-		DZA65_RS20680	0.13	-0.9
4,461,780	-		DZA65_RS20680	0.13	+0.1
4,461,812	+		DZA65_RS20680	0.18	-0.2
4,461,812	+		DZA65_RS20680	0.18	-0.3
4,461,812	+		DZA65_RS20680	0.18	-0.9
4,461,812	+		DZA65_RS20680	0.18	-0.2
4,461,812	+		DZA65_RS20680	0.18	+0.9
4,461,813	-		DZA65_RS20680	0.18	-0.3
4,461,813	-		DZA65_RS20680	0.18	-0.3
4,461,931	+		DZA65_RS20680	0.37	+0.5
4,461,931	+		DZA65_RS20680	0.37	-0.1
4,461,932	-		DZA65_RS20680	0.37	-1.2
4,461,932	-		DZA65_RS20680	0.37	-0.8
4,462,025	-		DZA65_RS20680	0.52	-1.3
4,462,025	-		DZA65_RS20680	0.52	-1.9
4,462,031	+		DZA65_RS20680	0.53	+0.0
4,462,031	+		DZA65_RS20680	0.53	-0.9
4,462,031	+		DZA65_RS20680	0.53	+0.2
4,462,031	+		DZA65_RS20680	0.53	+2.0
4,462,031	+		DZA65_RS20680	0.53	+1.5
4,462,032	-		DZA65_RS20680	0.53	+1.1
4,462,032	-		DZA65_RS20680	0.53	+0.2
4,462,126	+		DZA65_RS20680	0.68	+0.5
4,462,126	+		DZA65_RS20680	0.68	-2.3
4,462,127	-		DZA65_RS20680	0.68	-0.3
4,462,127	-		DZA65_RS20680	0.68	+1.3
4,462,160	+		DZA65_RS20680	0.74	+0.8
4,462,161	-		DZA65_RS20680	0.74	+0.5
4,462,161	-		DZA65_RS20680	0.74	+0.1
4,462,161	-		DZA65_RS20680	0.74	-1.7