Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19865

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,296,993	+		DZA65_RS19855	0.65	+0.0
4,296,993	+		DZA65_RS19855	0.65	+0.8
4,296,993	+		DZA65_RS19855	0.65	-2.3
4,296,993	+		DZA65_RS19855	0.65	+0.1
4,296,994	-		DZA65_RS19855	0.65	-0.9
4,296,994	-		DZA65_RS19855	0.65	-0.1
4,296,994	-		DZA65_RS19855	0.65	+0.9
4,297,077	+		DZA65_RS19855	0.74	+0.0
4,297,078	-		DZA65_RS19855	0.74	+0.9
4,297,230	+				+1.0
4,297,231	-				-1.3
4,297,321	-				-0.4
4,297,321	-				+2.5
4,297,321	-				+2.2
4,297,369	+				+1.0
4,297,451	+		DZA65_RS19860	0.19	-0.5
4,297,451	+		DZA65_RS19860	0.19	-0.3
4,297,451	+		DZA65_RS19860	0.19	+0.2
4,297,451	+		DZA65_RS19860	0.19	+0.0
4,297,451	+		DZA65_RS19860	0.19	-0.2
4,297,451	+		DZA65_RS19860	0.19	+0.5
4,297,451	+		DZA65_RS19860	0.19	-0.2
4,297,452	-		DZA65_RS19860	0.19	-2.0
4,297,452	-				+0.0
4,297,487	+		DZA65_RS19860	0.25	+2.9
4,297,487	+		DZA65_RS19860	0.25	-0.7
4,297,487	+		DZA65_RS19860	0.25	-1.8
4,297,487	+		DZA65_RS19860	0.25	+0.3
4,297,487	+		DZA65_RS19860	0.25	-2.3
4,297,487	+		DZA65_RS19860	0.25	+0.9
4,297,487	+		DZA65_RS19860	0.25	-0.4
4,297,487	+				+0.0
4,297,487	+		DZA65_RS19860	0.25	+0.2
4,297,487	+		DZA65_RS19860	0.25	-0.2
4,297,488	-		DZA65_RS19860	0.26	-0.7
4,297,488	-		DZA65_RS19860	0.26	+1.0
4,297,488	-		DZA65_RS19860	0.26	+0.1
4,297,488	-		DZA65_RS19860	0.26	-1.8
4,297,488	-		DZA65_RS19860	0.26	-1.0
4,297,563	-		DZA65_RS19860	0.40	-2.1
4,297,563	-		DZA65_RS19860	0.40	-1.1
4,297,686	+		DZA65_RS19860	0.63	-1.0
4,297,686	+		DZA65_RS19860	0.63	-1.6
4,297,686	+		DZA65_RS19860	0.63	+0.4
4,297,686	+		DZA65_RS19860	0.63	+0.4
4,297,687	-		DZA65_RS19860	0.63	+0.7
4,297,687	-		DZA65_RS19860	0.63	-1.0
4,297,687	-		DZA65_RS19860	0.63	-0.2
4,297,687	-		DZA65_RS19860	0.63	+0.0
4,297,730	+		DZA65_RS19860	0.71	-0.4
4,297,730	+		DZA65_RS19860	0.71	+0.0
4,297,731	-		DZA65_RS19860	0.71	+1.1
4,297,745	+		DZA65_RS19860	0.74	-1.0
4,297,781	+		DZA65_RS19860	0.81	+0.0
4,297,781	+		DZA65_RS19860	0.81	+0.9
4,297,781	+		DZA65_RS19860	0.81	-1.1
4,297,781	+		DZA65_RS19860	0.81	+1.2
4,297,782	-		DZA65_RS19860	0.81	-1.3
4,297,784	+		DZA65_RS19860	0.81	-0.6
4,297,785	-		DZA65_RS19860	0.82	-0.7
4,297,785	-		DZA65_RS19860	0.82	-0.8
4,297,785	-		DZA65_RS19860	0.82	+0.4
4,297,785	-				+1.0
4,297,833	-				+0.0
4,297,883	+				-0.5
4,297,883	+				-0.4
4,297,883	+				-0.2
4,297,883	+				+0.7
4,297,883	+				-0.8
4,297,884	-				-0.1
4,297,884	-				+1.0
4,297,889	+				-0.4
4,298,009	+		DZA65_RS19865	0.12	-0.4
4,298,010	-		DZA65_RS19865	0.12	-1.6
4,298,076	+		DZA65_RS19865	0.19	+0.3
4,298,076	+		DZA65_RS19865	0.19	-0.6
4,298,076	+		DZA65_RS19865	0.19	+0.1
4,298,076	+		DZA65_RS19865	0.19	-0.8
4,298,076	+		DZA65_RS19865	0.19	-0.6
4,298,076	+		DZA65_RS19865	0.19	+0.3
4,298,076	+		DZA65_RS19865	0.19	-0.1
4,298,077	-		DZA65_RS19865	0.19	+0.2
4,298,077	-		DZA65_RS19865	0.19	+0.2
4,298,077	-		DZA65_RS19865	0.19	+1.0
4,298,077	-		DZA65_RS19865	0.19	-0.4
4,298,077	-		DZA65_RS19865	0.19	-0.6
4,298,077	-		DZA65_RS19865	0.19	-2.1
4,298,077	-		DZA65_RS19865	0.19	-0.1
4,298,077	-		DZA65_RS19865	0.19	+0.4
4,298,077	-		DZA65_RS19865	0.19	-2.3
4,298,077	-		DZA65_RS19865	0.19	+0.7
4,298,084	+		DZA65_RS19865	0.20	+1.0
4,298,150	+		DZA65_RS19865	0.27	-2.6
4,298,223	+		DZA65_RS19865	0.35	-1.7
4,298,223	+		DZA65_RS19865	0.35	+0.6
4,298,223	+		DZA65_RS19865	0.35	+0.2
4,298,223	+		DZA65_RS19865	0.35	+1.0
4,298,223	+		DZA65_RS19865	0.35	+0.3
4,298,223	+		DZA65_RS19865	0.35	+0.0
4,298,223	+		DZA65_RS19865	0.35	-0.7
4,298,223	+		DZA65_RS19865	0.35	-2.2
4,298,223	+		DZA65_RS19865	0.35	+0.7
4,298,223	+		DZA65_RS19865	0.35	-0.7
4,298,223	+		DZA65_RS19865	0.35	-0.7
4,298,223	+		DZA65_RS19865	0.35	-1.3
4,298,223	+		DZA65_RS19865	0.35	+0.1
4,298,224	-		DZA65_RS19865	0.35	-1.1
4,298,224	-		DZA65_RS19865	0.35	+0.2
4,298,224	-		DZA65_RS19865	0.35	-1.3
4,298,224	-		DZA65_RS19865	0.35	+0.4
4,298,224	-		DZA65_RS19865	0.35	-0.6
4,298,224	-		DZA65_RS19865	0.35	+1.0
4,298,224	-		DZA65_RS19865	0.35	-0.2
4,298,274	+		DZA65_RS19865	0.40	+1.2
4,298,276	+		DZA65_RS19865	0.41	+0.3
4,298,276	+		DZA65_RS19865	0.41	+0.2
4,298,276	+		DZA65_RS19865	0.41	-1.3
4,298,277	-		DZA65_RS19865	0.41	-0.1
4,298,277	-		DZA65_RS19865	0.41	-1.6
4,298,277	-		DZA65_RS19865	0.41	-1.3
4,298,287	-		DZA65_RS19865	0.42	-0.8
4,298,292	+		DZA65_RS19865	0.42	+0.7
4,298,292	+		DZA65_RS19865	0.42	+0.5
4,298,293	-		DZA65_RS19865	0.42	-0.1
4,298,293	-		DZA65_RS19865	0.42	+0.3
4,298,412	+		DZA65_RS19865	0.55	+1.3
4,298,412	+		DZA65_RS19865	0.55	-1.0
4,298,413	-		DZA65_RS19865	0.55	-0.3
4,298,516	+		DZA65_RS19865	0.66	+0.9
4,298,517	-		DZA65_RS19865	0.66	-0.5
4,298,598	+		DZA65_RS19865	0.75	-0.8
4,298,598	+		DZA65_RS19865	0.75	+0.4
4,298,598	+		DZA65_RS19865	0.75	+2.3
4,298,598	+		DZA65_RS19865	0.75	-0.4
4,298,598	+		DZA65_RS19865	0.75	-0.8
4,298,599	-		DZA65_RS19865	0.75	+0.8
4,298,599	-		DZA65_RS19865	0.75	-0.5
4,298,599	-		DZA65_RS19865	0.75	+1.4
4,298,599	-		DZA65_RS19865	0.75	-1.3
4,298,599	-		DZA65_RS19865	0.75	+1.6
4,298,599	-		DZA65_RS19865	0.75	-0.8
4,298,599	-		DZA65_RS19865	0.75	-0.1
4,298,625	+		DZA65_RS19865	0.78	+0.5
4,298,625	+		DZA65_RS19865	0.78	+3.0
4,298,625	+		DZA65_RS19865	0.78	-0.6
4,298,625	+		DZA65_RS19865	0.78	+2.6
4,298,626	-		DZA65_RS19865	0.78	+0.2
4,298,626	-		DZA65_RS19865	0.78	-0.3
4,298,626	-		DZA65_RS19865	0.78	-0.6
4,298,626	-		DZA65_RS19865	0.78	-0.7
4,298,643	+		DZA65_RS19865	0.80	+1.4
4,298,643	+		DZA65_RS19865	0.80	-2.6
4,298,643	+		DZA65_RS19865	0.80	-0.4
4,298,643	+		DZA65_RS19865	0.80	-0.7
4,298,643	+		DZA65_RS19865	0.80	+0.3
4,298,644	-		DZA65_RS19865	0.80	+0.0
4,298,644	-		DZA65_RS19865	0.80	-1.6
4,298,644	-		DZA65_RS19865	0.80	-0.5
4,298,694	+		DZA65_RS19865	0.85	-0.1
4,298,695	-		DZA65_RS19865	0.85	-0.3
4,298,723	-		DZA65_RS19865	0.88	+0.4
4,298,725	+		DZA65_RS19865	0.89	+0.4
4,298,725	+		DZA65_RS19865	0.89	-0.4
4,298,725	+		DZA65_RS19865	0.89	-0.2
4,298,725	+		DZA65_RS19865	0.89	+0.6
4,298,725	+		DZA65_RS19865	0.89	+1.8
4,298,725	+		DZA65_RS19865	0.89	+0.3
4,298,725	+		DZA65_RS19865	0.89	-2.0
4,298,726	-		DZA65_RS19865	0.89	-1.0
4,298,726	-		DZA65_RS19865	0.89	+1.4
4,298,726	-		DZA65_RS19865	0.89	+1.2
4,298,726	-		DZA65_RS19865	0.89	-0.2
4,298,726	-		DZA65_RS19865	0.89	-2.0
4,298,726	-		DZA65_RS19865	0.89	+1.0
4,298,726	-		DZA65_RS19865	0.89	-0.8
4,298,726	-		DZA65_RS19865	0.89	+0.0
4,298,730	+		DZA65_RS19865	0.89	-0.7
4,298,730	+		DZA65_RS19865	0.89	-0.6
4,298,730	+				-1.3
4,298,731	-		DZA65_RS19865	0.89	-0.6
4,298,731	-		DZA65_RS19865	0.89	+0.2
4,298,731	-		DZA65_RS19865	0.89	-1.8
4,298,745	+				-0.2
4,298,745	+				-0.3
4,298,745	+				+1.1
4,298,745	+				-0.6
4,298,745	+				+0.0
4,298,745	+				-0.3
4,298,745	+				-2.4
4,298,746	-				-0.3
4,298,746	-				-0.3
4,298,861	+				+0.5
4,298,861	+				+0.7
4,298,862	-				-1.0
4,298,862	-				+0.2
4,298,862	-				+0.0
4,298,862	-				+0.2
4,298,871	+				-0.8
4,298,871	+				+1.7
4,298,872	-				-2.1
4,298,872	-				+0.5
4,298,970	-		DZA65_RS19870	0.15	-1.3
4,298,970	-		DZA65_RS19870	0.15	-0.6
4,299,050	+		DZA65_RS19870	0.24	-1.1
4,299,105	+		DZA65_RS19870	0.31	+0.4
4,299,105	+		DZA65_RS19870	0.31	-1.6
4,299,106	-		DZA65_RS19870	0.31	-2.1
4,299,106	-		DZA65_RS19870	0.31	+2.8
4,299,106	-		DZA65_RS19870	0.31	-0.6
4,299,139	-		DZA65_RS19870	0.35	-0.6
4,299,186	+		DZA65_RS19870	0.41	+0.7
4,299,186	+		DZA65_RS19870	0.41	+0.4
4,299,186	+		DZA65_RS19870	0.41	-1.1
4,299,186	+		DZA65_RS19870	0.41	+0.2
4,299,187	-		DZA65_RS19870	0.41	-0.1
4,299,187	-		DZA65_RS19870	0.41	-1.0
4,299,267	+		DZA65_RS19870	0.51	+0.4
4,299,323	-		DZA65_RS19870	0.58	-0.3
4,299,506	+		DZA65_RS19870	0.80	-0.1
4,299,506	+		DZA65_RS19870	0.80	-0.6
4,299,506	+		DZA65_RS19870	0.80	-0.2
4,299,507	-		DZA65_RS19870	0.80	+0.8
4,299,569	+		DZA65_RS19870	0.88	-0.5
4,299,569	+		DZA65_RS19870	0.88	-0.2
4,299,570	-		DZA65_RS19870	0.88	-0.1
4,299,570	-		DZA65_RS19870	0.88	-0.9
4,299,652	+				-1.4
4,299,666	+				-0.8
4,299,666	+				-1.0
4,299,666	+				-1.3
4,299,666	+				-0.5
4,299,666	+				+0.4
4,299,666	+				-0.6
4,299,667	-				-0.9
4,299,667	-				-0.6
4,299,667	-				-0.6
4,299,667	-				+1.0
4,299,667	-				-1.1
4,299,667	-				-0.7
4,299,671	+				+0.3
4,299,671	+				+0.8
4,299,671	+				+0.3
4,299,671	+				-0.8
4,299,671	+				-0.7
4,299,672	-				-0.3
4,299,672	-				-1.2
4,299,672	-				-0.7
4,299,679	+				+0.3
4,299,679	+				-0.2
4,299,679	+				-1.1
4,299,679	+				-1.3
4,299,679	+				+1.8
4,299,680	-				-0.0
4,299,680	-				+0.6
4,299,680	-				+0.3
4,299,680	-				-0.6
4,299,680	-				+0.4
4,299,680	-				+0.7
4,299,695	+				+1.3
4,299,696	-				+0.3
4,299,696	-				-0.6
4,299,813	+				-2.1
4,299,818	-				+1.0