Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19190

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,148,545	+		DZA65_RS19185	0.66	-2.4
4,148,545	+		DZA65_RS19185	0.66	+1.4
4,148,545	+		DZA65_RS19185	0.66	-1.4
4,148,545	+		DZA65_RS19185	0.66	-0.0
4,148,545	+		DZA65_RS19185	0.66	+0.6
4,148,545	+		DZA65_RS19185	0.66	-0.1
4,148,545	+		DZA65_RS19185	0.66	-0.8
4,148,545	+		DZA65_RS19185	0.66	-0.6
4,148,545	+		DZA65_RS19185	0.66	-2.1
4,148,545	+		DZA65_RS19185	0.66	-0.0
4,148,546	-		DZA65_RS19185	0.66	-0.2
4,148,546	-		DZA65_RS19185	0.66	-1.0
4,148,546	-		DZA65_RS19185	0.66	-1.4
4,148,546	-		DZA65_RS19185	0.66	+0.4
4,148,546	-		DZA65_RS19185	0.66	+0.5
4,148,546	-		DZA65_RS19185	0.66	+0.8
4,148,546	-		DZA65_RS19185	0.66	-0.3
4,148,546	-		DZA65_RS19185	0.66	-1.4
4,148,546	-		DZA65_RS19185	0.66	-0.4
4,148,546	-		DZA65_RS19185	0.66	+0.5
4,148,546	-		DZA65_RS19185	0.66	+1.0
4,148,546	-		DZA65_RS19185	0.66	-1.4
4,148,546	-		DZA65_RS19185	0.66	-0.6
4,148,568	+		DZA65_RS19185	0.68	+0.5
4,148,568	+		DZA65_RS19185	0.68	-0.4
4,148,568	+		DZA65_RS19185	0.68	+1.0
4,148,568	+		DZA65_RS19185	0.68	+0.6
4,148,569	-		DZA65_RS19185	0.68	-1.0
4,148,569	-		DZA65_RS19185	0.68	-1.0
4,148,569	-		DZA65_RS19185	0.68	+1.3
4,148,569	-		DZA65_RS19185	0.68	+0.5
4,148,569	-		DZA65_RS19185	0.68	+1.0
4,148,601	+		DZA65_RS19185	0.70	-0.2
4,148,602	-		DZA65_RS19185	0.70	+0.3
4,148,602	-		DZA65_RS19185	0.70	-0.2
4,148,602	-		DZA65_RS19185	0.70	+0.5
4,148,629	+		DZA65_RS19185	0.71	-0.2
4,148,630	-		DZA65_RS19185	0.71	+0.2
4,148,630	-		DZA65_RS19185	0.71	-0.6
4,148,630	-		DZA65_RS19185	0.71	-0.4
4,148,682	+		DZA65_RS19185	0.74	-0.8
4,148,682	+		DZA65_RS19185	0.74	-0.5
4,148,682	+		DZA65_RS19185	0.74	+0.2
4,148,682	+		DZA65_RS19185	0.74	-0.4
4,148,683	-		DZA65_RS19185	0.74	-0.6
4,148,683	-		DZA65_RS19185	0.74	+1.5
4,148,683	-		DZA65_RS19185	0.74	-0.5
4,148,683	-		DZA65_RS19185	0.74	-1.4
4,148,683	-		DZA65_RS19185	0.74	+0.2
4,148,683	-		DZA65_RS19185	0.74	-0.6
4,148,733	+		DZA65_RS19185	0.77	+3.0
4,148,734	-		DZA65_RS19185	0.77	+1.0
4,148,734	-		DZA65_RS19185	0.77	+0.7
4,148,734	-		DZA65_RS19185	0.77	+1.7
4,148,734	-		DZA65_RS19185	0.77	+0.2
4,148,734	-		DZA65_RS19185	0.77	-0.0
4,148,734	-		DZA65_RS19185	0.77	+1.9
4,148,734	-		DZA65_RS19185	0.77	-0.3
4,148,734	-		DZA65_RS19185	0.77	+0.5
4,148,734	-		DZA65_RS19185	0.77	-0.2
4,148,734	-		DZA65_RS19185	0.77	-0.4
4,148,793	+		DZA65_RS19185	0.81	-0.4
4,148,793	+		DZA65_RS19185	0.81	+1.0
4,148,851	+		DZA65_RS19185	0.84	-0.6
4,148,851	+		DZA65_RS19185	0.84	+0.4
4,148,852	-		DZA65_RS19185	0.84	+0.5
4,148,852	-		DZA65_RS19185	0.84	+1.0
4,148,853	+		DZA65_RS19185	0.84	-0.0
4,148,853	+		DZA65_RS19185	0.84	-1.4
4,148,853	+		DZA65_RS19185	0.84	+0.4
4,148,853	+		DZA65_RS19185	0.84	-1.8
4,148,853	+		DZA65_RS19185	0.84	+1.5
4,148,854	-		DZA65_RS19185	0.84	-0.4
4,148,854	-		DZA65_RS19185	0.84	-0.2
4,148,854	-		DZA65_RS19185	0.84	+0.1
4,148,854	-		DZA65_RS19185	0.84	-0.0
4,148,854	-		DZA65_RS19185	0.84	-0.4
4,148,854	-		DZA65_RS19185	0.84	+0.4
4,148,854	-		DZA65_RS19185	0.84	-0.0
4,148,854	-		DZA65_RS19185	0.84	+1.4
4,148,854	-		DZA65_RS19185	0.84	+0.3
4,148,940	+		DZA65_RS19185	0.89	-1.4
4,148,953	+				-0.8
4,148,953	+				+1.0
4,148,953	+				+1.3
4,148,953	+				+1.0
4,148,953	+				+1.0
4,148,953	+				-1.8
4,148,953	+				+2.0
4,148,953	+				+0.2
4,148,953	+				-0.0
4,148,953	+				-0.5
4,148,953	+				-0.0
4,148,953	+				-0.3
4,148,953	+				-0.2
4,148,954	-				+0.2
4,148,954	-				-0.4
4,148,954	-				+0.1
4,148,954	-				+0.1
4,148,954	-				+0.1
4,148,954	-				-0.0
4,148,954	-				-0.0
4,148,957	+				-0.1
4,148,957	+				-0.5
4,148,957	+				-0.7
4,148,958	-				+1.0
4,148,958	-				+0.8
4,148,958	-				-1.0
4,148,958	-				+0.4
4,148,958	-				-0.6
4,148,993	+				-1.7
4,148,993	+				-0.9
4,148,993	+				-0.5
4,148,994	-				+0.8
4,149,021	+				+1.7
4,149,021	+				-0.2
4,149,021	+				-0.0
4,149,021	+				-0.0
4,149,021	+				+1.6
4,149,021	+				-0.6
4,149,021	+				-0.9
4,149,021	+				-0.0
4,149,021	+				+0.4
4,149,022	-				-0.5
4,149,022	-				-0.6
4,149,022	-				+0.3
4,149,022	-				-1.4
4,149,022	-				+0.2
4,149,022	-				-1.5
4,149,022	-				+0.0
4,149,022	-				-1.0
4,149,025	+				+0.5
4,149,025	+				-0.4
4,149,026	-				+0.5
4,149,065	+				+0.4
4,149,065	+				+1.3
4,149,065	+				+1.0
4,149,066	-				-0.0
4,149,134	+				-2.1
4,149,134	+				-1.8
4,149,134	+				-0.0
4,149,134	+				-0.4
4,149,134	+				-1.0
4,149,134	+				-0.7
4,149,135	-				+1.2
4,149,135	-				+0.1
4,149,135	-				-0.8
4,149,135	-				+0.1
4,149,135	-				-2.0
4,149,135	-				+1.0
4,149,135	-				-2.6
4,149,145	-				+0.5
4,149,175	+				-1.3
4,149,175	+				-1.1
4,149,176	-				-0.3
4,149,176	-				-1.2
4,149,176	-				-1.7
4,149,229	+				-0.1
4,149,229	+				+1.5
4,149,230	-				+0.6
4,149,230	-				-0.8
4,149,230	-				+0.2
4,149,290	+				+0.1
4,149,291	-				-2.6
4,149,294	+				-0.5
4,149,294	+				+0.2
4,149,295	-				-0.8
4,149,296	+				-0.4
4,149,296	+				-0.3
4,149,296	+				+0.4
4,149,296	+				-0.1
4,149,297	-				-0.7
4,149,297	-				+0.3
4,149,297	-				+0.8
4,149,297	-				-1.5
4,149,297	-				+0.2
4,149,301	+				+1.1
4,149,301	+				-0.4
4,149,310	-				-1.6
4,149,310	-				+1.2
4,149,320	+				-0.6
4,149,320	+				-0.5
4,149,321	-				-0.0
4,149,321	-				+0.1
4,149,369	+				+1.2
4,149,369	+				+0.4
4,149,369	+				+0.5
4,149,370	-				+0.5
4,149,382	-				-0.4
4,149,382	-				+0.4
4,149,401	+				+0.2
4,149,401	+				-0.2
4,149,402	-				+0.2
4,149,402	-				+1.5
4,149,402	-				-0.5
4,149,436	-				+1.2
4,149,456	+				+0.4
4,149,456	+				-1.0
4,149,456	+				+2.7
4,149,468	+				-2.0
4,149,468	+				+0.3
4,149,469	-				+0.2
4,149,520	+				+1.3
4,149,520	+				-0.5
4,149,521	-				-0.0
4,149,529	+				+0.5
4,149,529	+				-0.3
4,149,529	+				-0.5
4,149,529	+				-0.2
4,149,529	+				-0.3
4,149,529	+				-0.5
4,149,530	-				+1.7
4,149,530	-				-1.6
4,149,530	-				+0.3
4,149,530	-				+0.2
4,149,530	-				-0.6
4,149,585	+				-0.2
4,149,586	-				-1.0
4,149,617	+				-0.2
4,149,713	+		DZA65_RS19190	0.11	+0.3
4,149,713	+		DZA65_RS19190	0.11	+0.8
4,149,772	+		DZA65_RS19190	0.14	+0.6
4,149,772	+		DZA65_RS19190	0.14	+0.4
4,149,772	+		DZA65_RS19190	0.14	-1.2
4,149,772	+		DZA65_RS19190	0.14	-0.0
4,149,773	-		DZA65_RS19190	0.14	+1.7
4,149,773	-		DZA65_RS19190	0.14	+0.0
4,149,817	+		DZA65_RS19190	0.17	-1.0
4,149,817	+		DZA65_RS19190	0.17	+0.4
4,149,817	+		DZA65_RS19190	0.17	-0.2
4,149,818	-		DZA65_RS19190	0.17	-0.3
4,149,818	-		DZA65_RS19190	0.17	-0.5
4,149,818	-		DZA65_RS19190	0.17	+0.8
4,149,818	-		DZA65_RS19190	0.17	+0.2
4,149,818	-		DZA65_RS19190	0.17	-0.2
4,149,818	-		DZA65_RS19190	0.17	-0.6
4,149,818	-		DZA65_RS19190	0.17	-0.7
4,149,901	+		DZA65_RS19190	0.21	-0.6
4,149,901	+		DZA65_RS19190	0.21	+0.5
4,149,901	+		DZA65_RS19190	0.21	-1.0
4,149,901	+		DZA65_RS19190	0.21	-0.4
4,149,901	+		DZA65_RS19190	0.21	+1.0
4,149,901	+		DZA65_RS19190	0.21	-0.0
4,149,901	+		DZA65_RS19190	0.21	-0.7
4,149,901	+		DZA65_RS19190	0.21	+2.0
4,149,901	+		DZA65_RS19190	0.21	-0.6
4,149,902	-		DZA65_RS19190	0.21	-0.4
4,149,902	-		DZA65_RS19190	0.21	-2.0
4,149,902	-		DZA65_RS19190	0.21	-0.0
4,149,902	-		DZA65_RS19190	0.21	-1.4
4,149,902	-		DZA65_RS19190	0.21	+0.5
4,149,902	-		DZA65_RS19190	0.21	-0.0
4,149,902	-				-0.6
4,150,011	-		DZA65_RS19190	0.27	-0.2
4,150,043	-		DZA65_RS19190	0.29	+0.6
4,150,043	-		DZA65_RS19190	0.29	-0.6
4,150,046	-		DZA65_RS19190	0.29	+0.2
4,150,046	-		DZA65_RS19190	0.29	-0.8
4,150,097	+		DZA65_RS19190	0.32	+1.1
4,150,097	+		DZA65_RS19190	0.32	+0.4
4,150,144	+		DZA65_RS19190	0.35	-1.0
4,150,201	+		DZA65_RS19190	0.38	+1.2
4,150,201	+		DZA65_RS19190	0.38	-1.9
4,150,202	-		DZA65_RS19190	0.38	-1.2
4,150,241	+		DZA65_RS19190	0.40	-0.6
4,150,241	+		DZA65_RS19190	0.40	-0.1
4,150,241	+		DZA65_RS19190	0.40	-0.9
4,150,242	-		DZA65_RS19190	0.40	-0.4
4,150,242	-		DZA65_RS19190	0.40	+1.2
4,150,242	-		DZA65_RS19190	0.40	-0.6
4,150,242	-		DZA65_RS19190	0.40	-1.6
4,150,242	-		DZA65_RS19190	0.40	+0.5
4,150,339	+		DZA65_RS19190	0.45	-0.1
4,150,339	+		DZA65_RS19190	0.45	-0.3
4,150,339	+		DZA65_RS19190	0.45	-0.4
4,150,387	-		DZA65_RS19190	0.48	-1.0
4,150,397	+		DZA65_RS19190	0.49	+0.8
4,150,397	+		DZA65_RS19190	0.49	+1.0
4,150,397	+		DZA65_RS19190	0.49	+2.8
4,150,398	-		DZA65_RS19190	0.49	+1.0
4,150,398	-		DZA65_RS19190	0.49	-0.2
4,150,490	-		DZA65_RS19190	0.54	+3.3
4,150,490	-		DZA65_RS19190	0.54	+0.2
4,150,512	+		DZA65_RS19190	0.55	+0.3
4,150,512	+		DZA65_RS19190	0.55	+1.0
4,150,512	+		DZA65_RS19190	0.55	-0.5
4,150,512	+		DZA65_RS19190	0.55	+1.3
4,150,513	-		DZA65_RS19190	0.55	-0.0
4,150,513	-		DZA65_RS19190	0.55	-0.2
4,150,513	-		DZA65_RS19190	0.55	+1.5
4,150,567	+		DZA65_RS19190	0.58	-1.9
4,150,568	-		DZA65_RS19190	0.58	+0.4
4,150,595	+		DZA65_RS19190	0.60	-1.8
4,150,596	-		DZA65_RS19190	0.60	-0.6
4,150,596	-				-0.6
4,150,650	+		DZA65_RS19190	0.63	-0.5
4,150,650	+		DZA65_RS19190	0.63	+1.3
4,150,650	+		DZA65_RS19190	0.63	-0.0
4,150,650	+		DZA65_RS19190	0.63	+0.2
4,150,650	+		DZA65_RS19190	0.63	+1.4
4,150,650	+		DZA65_RS19190	0.63	-1.8
4,150,650	+		DZA65_RS19190	0.63	-0.0
4,150,651	-		DZA65_RS19190	0.63	+1.0
4,150,651	-		DZA65_RS19190	0.63	+0.5
4,150,651	-		DZA65_RS19190	0.63	-0.5
4,150,651	-		DZA65_RS19190	0.63	-2.4
4,150,651	-		DZA65_RS19190	0.63	-0.0
4,150,714	+		DZA65_RS19190	0.66	+0.4
4,150,715	-		DZA65_RS19190	0.66	+0.5
4,150,757	+		DZA65_RS19190	0.69	+1.1
4,150,757	+		DZA65_RS19190	0.69	-1.6
4,150,757	+		DZA65_RS19190	0.69	-0.9
4,150,757	+		DZA65_RS19190	0.69	-0.5
4,150,758	-		DZA65_RS19190	0.69	-1.2
4,150,759	+		DZA65_RS19190	0.69	+0.9
4,150,759	+		DZA65_RS19190	0.69	-1.8
4,150,759	+		DZA65_RS19190	0.69	-0.5
4,150,759	+		DZA65_RS19190	0.69	+0.5
4,150,759	+		DZA65_RS19190	0.69	+1.4
4,150,759	+		DZA65_RS19190	0.69	-0.4
4,150,759	+		DZA65_RS19190	0.69	+0.5
4,150,759	+		DZA65_RS19190	0.69	+0.3
4,150,759	+		DZA65_RS19190	0.69	+0.4
4,150,760	-		DZA65_RS19190	0.69	+0.1
4,150,760	-		DZA65_RS19190	0.69	+1.4
4,150,760	-		DZA65_RS19190	0.69	-1.6
4,150,760	-		DZA65_RS19190	0.69	+0.4
4,150,760	-		DZA65_RS19190	0.69	-0.9
4,150,760	-		DZA65_RS19190	0.69	+1.2
4,150,760	-		DZA65_RS19190	0.69	+0.0
4,150,760	-		DZA65_RS19190	0.69	-1.2
4,150,760	-		DZA65_RS19190	0.69	-1.6
4,151,012	+		DZA65_RS19190	0.83	-0.3
4,151,012	+		DZA65_RS19190	0.83	-0.6
4,151,044	+		DZA65_RS19190	0.84	-0.7
4,151,044	+		DZA65_RS19190	0.84	-0.0
4,151,102	+				+2.0
4,151,102	+		DZA65_RS19190	0.88	+0.2
4,151,103	-		DZA65_RS19190	0.88	+1.0
4,151,299	+				-0.6
4,151,299	+				-0.6
4,151,299	+				-0.0
4,151,299	+				-0.8
4,151,300	-				+0.4
4,151,300	-				+0.1
4,151,353	+				+1.0
4,151,354	-				+0.1
4,151,354	-				-2.0
4,151,355	+				-2.0
4,151,355	+				+0.8
4,151,381	+				+0.0
4,151,443	+				+0.3
4,151,444	-				-1.2
4,151,444	-				+0.1
4,151,468	+				-1.0
4,151,469	-				-0.2
4,151,506	+				-1.2
4,151,506	+				+0.0
4,151,506	+				-1.7
4,151,507	-				-1.0
4,151,512	+				-1.4
4,151,512	+				+0.7
4,151,512	+				-0.8
4,151,513	-				+0.8
4,151,513	-				-0.0
4,151,576	+		DZA65_RS19195	0.23	-1.6
4,151,577	-		DZA65_RS19195	0.24	-0.2
4,151,585	+		DZA65_RS19195	0.33	+0.3
4,151,586	-		DZA65_RS19195	0.35	+1.0
4,151,586	-		DZA65_RS19195	0.35	-0.8
4,151,586	-		DZA65_RS19195	0.35	-0.8
4,151,588	+		DZA65_RS19195	0.37	+0.1
4,151,588	+		DZA65_RS19195	0.37	-2.2
4,151,588	+		DZA65_RS19195	0.37	-1.5
4,151,589	-		DZA65_RS19195	0.38	-1.8
4,151,589	-		DZA65_RS19195	0.38	-1.0
4,151,591	+		DZA65_RS19195	0.40	-2.0
4,151,591	+		DZA65_RS19195	0.40	-2.0
4,151,658	+				+0.1
4,151,659	-				-1.5
4,151,659	-				-2.2
4,151,659	-				-1.7
4,151,660	+				+1.2
4,151,660	+				+0.5
4,151,660	+				-0.4
4,151,660	+				-1.6
4,151,661	-				-0.4
4,151,661	-				-1.6
4,151,749	+				-0.4
4,151,750	-				-0.0
4,151,750	-				-3.1
4,151,750	-				-0.0
4,151,752	+				-0.6
4,151,752	+				-0.8
4,151,752	+				-0.8
4,151,752	+				-0.6
4,151,753	-				-1.0
4,151,753	-				-3.4
4,151,753	-				-0.6
4,151,907	+		DZA65_RS19200	0.11	+0.1
4,151,907	+		DZA65_RS19200	0.11	-0.8
4,151,907	+		DZA65_RS19200	0.11	-1.0
4,151,907	+		DZA65_RS19200	0.11	-0.0
4,151,927	-		DZA65_RS19200	0.12	-1.3
4,151,935	+		DZA65_RS19200	0.13	-0.7
4,151,936	-		DZA65_RS19200	0.13	-1.3
4,151,975	-		DZA65_RS19200	0.15	-0.3
4,152,104	+		DZA65_RS19200	0.23	+1.4
4,152,104	+		DZA65_RS19200	0.23	-1.2
4,152,104	+		DZA65_RS19200	0.23	-1.2
4,152,104	+		DZA65_RS19200	0.23	-0.6
4,152,104	+		DZA65_RS19200	0.23	-0.5
4,152,104	+		DZA65_RS19200	0.23	-1.2
4,152,104	+		DZA65_RS19200	0.23	-1.0
4,152,104	+		DZA65_RS19200	0.23	-1.2
4,152,104	+		DZA65_RS19200	0.23	-0.2
4,152,104	+		DZA65_RS19200	0.23	-1.2
4,152,104	+		DZA65_RS19200	0.23	-1.6
4,152,104	+		DZA65_RS19200	0.23	-1.5
4,152,105	-		DZA65_RS19200	0.23	-2.0
4,152,105	-		DZA65_RS19200	0.23	-0.2
4,152,105	-		DZA65_RS19200	0.23	-1.2
4,152,105	-		DZA65_RS19200	0.23	-1.0
4,152,105	-		DZA65_RS19200	0.23	-2.3
4,152,105	-		DZA65_RS19200	0.23	-1.0
4,152,105	-		DZA65_RS19200	0.23	-0.8
4,152,105	-		DZA65_RS19200	0.23	-1.0
4,152,105	-		DZA65_RS19200	0.23	-0.0
4,152,105	-		DZA65_RS19200	0.23	-1.4
4,152,105	-		DZA65_RS19200	0.23	-1.7
4,152,125	-		DZA65_RS19200	0.25	-0.0
4,152,128	+		DZA65_RS19200	0.25	-0.6
4,152,128	+		DZA65_RS19200	0.25	-0.0
4,152,129	-		DZA65_RS19200	0.25	+2.0
4,152,198	+		DZA65_RS19200	0.29	-0.6
4,152,198	+		DZA65_RS19200	0.29	-0.5
4,152,198	+		DZA65_RS19200	0.29	+1.0
4,152,198	+		DZA65_RS19200	0.29	-0.4
4,152,199	-		DZA65_RS19200	0.29	-1.2
4,152,199	-		DZA65_RS19200	0.29	-0.3
4,152,199	-		DZA65_RS19200	0.29	-3.2
4,152,199	-		DZA65_RS19200	0.29	-0.2
4,152,199	-		DZA65_RS19200	0.29	-0.6
4,152,199	-		DZA65_RS19200	0.29	-2.9
4,152,199	-		DZA65_RS19200	0.29	-0.5
4,152,254	+		DZA65_RS19200	0.33	-0.7
4,152,255	-		DZA65_RS19200	0.33	-0.6
4,152,255	-		DZA65_RS19200	0.33	-2.0
4,152,296	+		DZA65_RS19200	0.36	-0.8
4,152,296	+		DZA65_RS19200	0.36	-0.8
4,152,296	+		DZA65_RS19200	0.36	-0.5
4,152,297	-		DZA65_RS19200	0.36	+1.3
4,152,297	-		DZA65_RS19200	0.36	-0.4
4,152,297	-		DZA65_RS19200	0.36	-0.2
4,152,319	+		DZA65_RS19200	0.37	-0.8