Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18915

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,084,291	+				-0.6
4,084,291	+				-1.1
4,084,291	+				-0.1
4,084,292	-				-1.1
4,084,292	-				-0.1
4,084,292	-				-0.1
4,084,292	-				+0.4
4,084,292	-				+2.3
4,084,292	-				-0.5
4,084,306	-				-1.9
4,084,342	+				-0.9
4,084,342	+				+0.1
4,084,342	+				+0.9
4,084,342	+				+1.5
4,084,342	+				-0.5
4,084,342	+				+1.5
4,084,342	+				-0.8
4,084,342	+				-1.1
4,084,342	+				-0.7
4,084,342	+				+0.2
4,084,343	-				+0.2
4,084,343	-				+1.4
4,084,343	-				+1.6
4,084,343	-				-1.1
4,084,343	-				-0.1
4,084,445	-				-2.4
4,084,463	-				-0.0
4,084,530	-				+0.2
4,084,530	-				+0.5
4,084,544	+				+1.8
4,084,544	+				+0.9
4,084,545	-				+0.0
4,084,545	-				-0.1
4,084,545	-				-0.4
4,084,545	-				+0.2
4,084,551	+				-0.4
4,084,551	+				+1.4
4,084,551	+				-0.1
4,084,551	+				+0.3
4,084,551	+				-1.2
4,084,551	+				+0.4
4,084,551	+				+0.5
4,084,551	+				+1.1
4,084,551	+				+1.9
4,084,551	+				+0.5
4,084,551	+				-0.6
4,084,551	+				+0.9
4,084,551	+				+0.5
4,084,551	+				-1.9
4,084,551	+				-1.6
4,084,551	+				+0.4
4,084,551	+				-0.6
4,084,551	+				-1.6
4,084,552	-				+0.8
4,084,552	-				-0.1
4,084,552	-				+2.4
4,084,552	-				+0.5
4,084,552	-				+0.8
4,084,552	-				+0.5
4,084,552	-				-1.6
4,084,552	-				-1.4
4,084,552	-				+1.9
4,084,554	+				+0.4
4,084,554	+				+1.4
4,084,554	+				+0.4
4,084,554	+				-0.6
4,084,554	+				-1.1
4,084,554	+				+0.1
4,084,554	+				+0.2
4,084,554	+				+0.8
4,084,554	+				+0.1
4,084,555	-				+0.1
4,084,555	-				+0.6
4,084,555	-				+0.7
4,084,555	-				+0.8
4,084,555	-				-0.9
4,084,555	-				-1.0
4,084,571	+				-0.6
4,084,606	+				+2.8
4,084,606	+				+1.1
4,084,606	+				-0.6
4,084,607	-				+0.9
4,084,944	+		DZA65_RS18910	0.69	-0.6
4,084,945	-		DZA65_RS18910	0.69	+0.2
4,084,945	-		DZA65_RS18910	0.69	-1.1
4,084,966	+		DZA65_RS18910	0.72	-1.1
4,084,966	+		DZA65_RS18910	0.72	-0.8
4,084,966	+		DZA65_RS18910	0.72	+0.8
4,084,969	+		DZA65_RS18910	0.73	-0.4
4,084,969	+		DZA65_RS18910	0.73	+0.9
4,084,969	+		DZA65_RS18910	0.73	-1.4
4,084,969	+		DZA65_RS18910	0.73	-0.6
4,084,969	+		DZA65_RS18910	0.73	-0.9
4,084,969	+		DZA65_RS18910	0.73	-0.9
4,084,970	-		DZA65_RS18910	0.73	-0.5
4,084,970	-		DZA65_RS18910	0.73	-1.8
4,084,970	-		DZA65_RS18910	0.73	-1.2
4,084,970	-		DZA65_RS18910	0.73	+0.7
4,084,970	-		DZA65_RS18910	0.73	-0.3
4,084,970	-		DZA65_RS18910	0.73	-0.2
4,084,970	-		DZA65_RS18910	0.73	-1.4
4,084,970	-		DZA65_RS18910	0.73	-0.1
4,084,980	+		DZA65_RS18910	0.75	-0.7
4,084,980	+		DZA65_RS18910	0.75	-0.1
4,085,017	-		DZA65_RS18910	0.81	-0.1
4,085,017	-		DZA65_RS18910	0.81	-0.1
4,085,029	+		DZA65_RS18910	0.84	+0.4
4,085,029	+		DZA65_RS18910	0.84	+0.6
4,085,029	+		DZA65_RS18910	0.84	+0.2
4,085,030	-		DZA65_RS18910	0.84	-0.9
4,085,089	+				+0.1
4,085,119	+				+0.3
4,085,119	+				-0.1
4,085,119	+				-1.1
4,085,120	-				-0.8
4,085,120	-				+1.2
4,085,120	-				+1.2
4,085,120	-				-1.1
4,085,136	-				+1.2
4,085,236	+				+1.2
4,085,236	+				-1.1
4,085,236	+				-1.8
4,085,236	+				-1.8
4,085,236	+				-2.1
4,085,237	-				-1.5
4,085,237	-				+0.7
4,085,402	-		DZA65_RS18915	0.17	-2.5
4,085,405	+		DZA65_RS18915	0.18	-1.3
4,085,405	+		DZA65_RS18915	0.18	+0.2
4,085,405	+		DZA65_RS18915	0.18	-1.8
4,085,406	-		DZA65_RS18915	0.18	-0.9
4,085,406	-		DZA65_RS18915	0.18	-1.0
4,085,406	-		DZA65_RS18915	0.18	-0.6
4,085,406	-		DZA65_RS18915	0.18	+0.6
4,085,406	-		DZA65_RS18915	0.18	-0.7
4,085,406	-		DZA65_RS18915	0.18	+1.4
4,085,525	+		DZA65_RS18915	0.32	+0.6
4,085,628	+		DZA65_RS18915	0.44	-1.9
4,085,628	+		DZA65_RS18915	0.44	+0.7
4,085,629	-		DZA65_RS18915	0.45	-2.1
4,085,629	-		DZA65_RS18915	0.45	-1.1
4,085,727	-		DZA65_RS18915	0.56	-1.3
4,085,789	+				+0.9
4,085,996	-		DZA65_RS18915	0.89	+1.3
4,086,039	+				+1.2
4,086,045	+				-0.8
4,086,046	-				-1.1
4,086,046	-				-0.8
4,086,056	+				-0.2
4,086,056	+				+1.5
4,086,056	+				-1.3
4,086,057	-				+0.9
4,086,057	-				+0.2
4,086,057	-				+0.1
4,086,057	-				-2.3
4,086,083	+				+0.4
4,086,083	+				+0.9
4,086,084	-				+0.6
4,086,084	-				+0.5
4,086,100	-				+0.5
4,086,112	+				+0.5
4,086,113	-				-1.1
4,086,113	-				-0.1
4,086,146	+				-0.4
4,086,147	-				-2.4
4,086,255	+		DZA65_RS18920	0.14	-2.1
4,086,256	+		DZA65_RS18920	0.14	+1.3
4,086,257	-		DZA65_RS18920	0.15	-1.9
4,086,257	-		DZA65_RS18920	0.15	+2.4
4,086,299	-		DZA65_RS18920	0.19	-0.1
4,086,332	-		DZA65_RS18920	0.22	+0.9
4,086,343	+		DZA65_RS18920	0.23	-2.5
4,086,590	+		DZA65_RS18920	0.49	-1.1
4,086,597	-		DZA65_RS18920	0.49	-0.9
4,086,599	+		DZA65_RS18920	0.49	-0.4
4,086,600	-		DZA65_RS18920	0.50	+0.9
4,086,626	+		DZA65_RS18920	0.52	-1.6
4,086,628	+		DZA65_RS18920	0.52	-1.1
4,086,628	+		DZA65_RS18920	0.52	-0.6
4,086,628	+		DZA65_RS18920	0.52	+0.6
4,086,629	-		DZA65_RS18920	0.52	-0.1
4,086,629	-		DZA65_RS18920	0.52	-0.1
4,086,629	-		DZA65_RS18920	0.52	+0.1
4,086,629	-				+0.9
4,086,750	+		DZA65_RS18920	0.65	-1.1
4,086,751	-		DZA65_RS18920	0.65	+1.6
4,087,071	-				-1.6
4,087,083	-				-1.6