Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18755

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,044,484	+		DZA65_RS18745	0.20	-1.6
4,044,484	+		DZA65_RS18745	0.20	+0.9
4,044,484	+		DZA65_RS18745	0.20	-0.3
4,044,484	+		DZA65_RS18745	0.20	+0.4
4,044,484	+		DZA65_RS18745	0.20	+0.9
4,044,485	-		DZA65_RS18745	0.20	-1.0
4,044,533	+		DZA65_RS18745	0.29	+0.9
4,044,533	+		DZA65_RS18745	0.29	-0.4
4,044,533	+		DZA65_RS18745	0.29	-0.9
4,044,533	+		DZA65_RS18745	0.29	+1.4
4,044,533	+		DZA65_RS18745	0.29	+0.4
4,044,534	-		DZA65_RS18745	0.29	+1.4
4,044,534	-		DZA65_RS18745	0.29	-1.4
4,044,574	+		DZA65_RS18745	0.36	+0.0
4,044,574	+		DZA65_RS18745	0.36	-1.4
4,044,575	-		DZA65_RS18745	0.36	+0.9
4,044,737	+		DZA65_RS18745	0.64	+0.3
4,044,905	+				-1.1
4,044,939	+				+0.9
4,044,945	+				+0.4
4,044,946	-				+0.1
4,044,960	+				+1.9
4,044,981	+				+1.2
4,044,981	+				-1.3
4,044,981	+				-0.1
4,044,982	-				+1.2
4,044,982	-				+0.9
4,044,982	-				+0.2
4,044,982	-				-0.0
4,044,990	+				-0.4
4,044,990	+				+1.4
4,045,000	+				+0.8
4,045,000	+				-0.3
4,045,001	-				+0.5
4,045,001	-				+0.5
4,045,001	-				+0.2
4,045,073	-		DZA65_RS18750	0.31	+0.1
4,045,075	+		DZA65_RS18750	0.32	-0.5
4,045,075	+		DZA65_RS18750	0.32	-0.1
4,045,103	+		DZA65_RS18750	0.41	+1.2
4,045,103	+		DZA65_RS18750	0.41	+3.1
4,045,103	+		DZA65_RS18750	0.41	+0.5
4,045,103	+		DZA65_RS18750	0.41	+0.3
4,045,103	+		DZA65_RS18750	0.41	-0.2
4,045,104	-		DZA65_RS18750	0.41	+0.4
4,045,104	-		DZA65_RS18750	0.41	+0.1
4,045,104	-		DZA65_RS18750	0.41	-0.3
4,045,104	-		DZA65_RS18750	0.41	-0.1
4,045,201	+		DZA65_RS18750	0.74	+1.1
4,045,201	+		DZA65_RS18750	0.74	+0.3
4,045,204	+		DZA65_RS18750	0.75	-0.1
4,045,204	+		DZA65_RS18750	0.75	-0.4
4,045,204	+		DZA65_RS18750	0.75	-0.9
4,045,204	+		DZA65_RS18750	0.75	+0.4
4,045,204	+		DZA65_RS18750	0.75	-1.4
4,045,205	-		DZA65_RS18750	0.75	-0.5
4,045,205	-		DZA65_RS18750	0.75	+0.1
4,045,205	-		DZA65_RS18750	0.75	+0.9
4,045,205	-		DZA65_RS18750	0.75	-1.6
4,045,205	-		DZA65_RS18750	0.75	-0.6
4,045,205	-		DZA65_RS18750	0.75	-1.6
4,045,205	-		DZA65_RS18750	0.75	+1.5
4,045,205	-		DZA65_RS18750	0.75	-1.1
4,045,226	+		DZA65_RS18750	0.82	-1.6
4,045,226	+		DZA65_RS18750	0.82	+1.4
4,045,226	+		DZA65_RS18750	0.82	+1.4
4,045,229	+		DZA65_RS18750	0.83	+0.2
4,045,230	-				+1.5
4,045,265	+				-0.2
4,045,269	-				+0.5
4,045,272	-				-0.9
4,045,285	-				+0.2
4,045,285	-				-0.8
4,045,304	-				+0.5
4,045,326	+				+0.3
4,045,327	-				-0.3
4,045,327	-				+0.7
4,045,360	-				-1.9
4,045,408	-				-0.6
4,045,410	+				+1.5
4,045,411	-				-0.3
4,045,440	-				-1.9
4,045,446	+				-0.1
4,045,447	-				+1.6
4,045,447	-				-0.8
4,045,450	-				-0.1
4,045,455	+				+0.4
4,045,462	+				-0.2
4,045,463	-				-0.6
4,045,530	-		DZA65_RS18755	0.11	-1.1
4,045,555	-		DZA65_RS18755	0.17	+0.5
4,045,569	+		DZA65_RS18755	0.19	-0.4
4,045,569	+		DZA65_RS18755	0.19	-1.0
4,045,569	+		DZA65_RS18755	0.19	-0.6
4,045,570	-		DZA65_RS18755	0.20	+0.7
4,045,570	-		DZA65_RS18755	0.20	-0.1
4,045,587	+		DZA65_RS18755	0.23	-0.3
4,045,607	-		DZA65_RS18755	0.27	+2.3
4,045,629	-		DZA65_RS18755	0.32	-0.1
4,045,629	-		DZA65_RS18755	0.32	-0.7
4,045,629	-		DZA65_RS18755	0.32	-0.6
4,045,629	-		DZA65_RS18755	0.32	+0.2
4,045,755	-		DZA65_RS18755	0.57	+0.2
4,045,813	-		DZA65_RS18755	0.69	-0.3
4,045,813	-		DZA65_RS18755	0.69	+1.4
4,045,815	-		DZA65_RS18755	0.70	-1.9
4,045,815	-		DZA65_RS18755	0.70	+1.5
4,045,815	-		DZA65_RS18755	0.70	+1.9
4,045,815	-		DZA65_RS18755	0.70	-0.3
4,045,815	-		DZA65_RS18755	0.70	-1.6
4,045,815	-		DZA65_RS18755	0.70	-2.1
4,045,857	-		DZA65_RS18755	0.78	-0.1
4,046,002	-				+0.4
4,046,076	-				-0.3
4,046,175	-				+0.6
4,046,229	+				+0.6
4,046,230	-				-0.9
4,046,267	-				-0.1
4,046,291	-				-1.1
4,046,330	+		DZA65_RS18760	0.14	-0.3
4,046,331	-		DZA65_RS18760	0.15	-0.1
4,046,393	+		DZA65_RS18760	0.25	-0.3
4,046,406	+		DZA65_RS18760	0.27	+0.7
4,046,483	+		DZA65_RS18760	0.40	-0.1
4,046,485	+		DZA65_RS18760	0.41	+0.9
4,046,485	+		DZA65_RS18760	0.41	-0.1
4,046,486	-		DZA65_RS18760	0.41	+0.3
4,046,486	-		DZA65_RS18760	0.41	+0.2
4,046,486	-		DZA65_RS18760	0.41	-0.1
4,046,486	-		DZA65_RS18760	0.41	-0.3
4,046,486	-		DZA65_RS18760	0.41	+0.6
4,046,486	-		DZA65_RS18760	0.41	+0.8
4,046,499	+		DZA65_RS18760	0.43	+0.5
4,046,499	+		DZA65_RS18760	0.43	-0.1
4,046,500	-		DZA65_RS18760	0.43	+0.1
4,046,533	+		DZA65_RS18760	0.49	+0.9
4,046,534	-		DZA65_RS18760	0.49	+1.1
4,046,534	-		DZA65_RS18760	0.49	-0.5
4,046,547	-		DZA65_RS18760	0.51	-1.1
4,046,581	-		DZA65_RS18760	0.57	-0.9
4,046,604	+		DZA65_RS18760	0.61	-0.6
4,046,639	+		DZA65_RS18760	0.67	-2.5
4,046,639	+		DZA65_RS18760	0.67	+1.3
4,046,646	-		DZA65_RS18760	0.68	-0.1
4,046,683	-		DZA65_RS18760	0.74	+0.0
4,046,683	-		DZA65_RS18760	0.74	+0.4
4,046,707	+		DZA65_RS18760	0.79	-0.4
4,046,723	+		DZA65_RS18760	0.81	-2.1
4,046,723	+		DZA65_RS18760	0.81	+0.9
4,046,724	-		DZA65_RS18760	0.81	-1.3
4,046,724	-		DZA65_RS18760	0.81	+0.6
4,046,724	-		DZA65_RS18760	0.81	-0.4
4,046,725	+		DZA65_RS18760	0.82	+0.6
4,046,796	+				+1.7
4,046,796	+				+0.5
4,046,797	-				-0.4
4,046,797	-				+0.4
4,046,797	-				-3.0
4,046,797	-				-1.1
4,046,797	-				+0.1
4,046,815	+				+0.4
4,046,815	+				+0.8
4,046,816	-				+0.7
4,046,816	-				+1.4
4,046,816	-				+0.9
4,046,849	-				-0.1
4,046,871	+				-1.3
4,046,914	+				-2.8
4,046,914	+				+0.4
4,046,914	+				-1.4
4,046,915	-				+0.7
4,046,915	-				-0.6