Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18725

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,035,094	+				-0.5
4,035,094	+				-0.1
4,035,094	+				+0.1
4,035,095	-				-0.0
4,035,122	+				-2.0
4,035,122	+				-0.1
4,035,122	+				-1.1
4,035,122	+				+0.4
4,035,122	+				+0.2
4,035,123	-				+1.3
4,035,123	-				+0.2
4,035,123	-				-0.9
4,035,124	+				+0.2
4,035,125	-				+1.3
4,035,155	-				-1.1
4,035,188	+				-0.1
4,035,188	+				-1.9
4,035,189	-				+0.4
4,035,189	-				-0.3
4,035,189	-				-1.3
4,035,189	-				-0.6
4,035,189	-				-1.5
4,035,189	-				-1.4
4,035,205	+				+0.2
4,035,214	+				-0.3
4,035,214	+				-1.5
4,035,214	+				-0.1
4,035,215	-				-0.3
4,035,215	-				+0.5
4,035,215	-				+1.2
4,035,215	-				-0.4
4,035,265	+				+0.8
4,035,274	+				-0.7
4,035,274	+				-0.1
4,035,274	+				+0.6
4,035,274	+				+0.5
4,035,275	-				-0.3
4,035,275	-				-0.1
4,035,275	-				-0.8
4,035,306	+				-0.1
4,035,306	+				+0.9
4,035,334	+				-0.4
4,035,334	+				-0.8
4,035,335	-				-0.5
4,035,335	-				+1.2
4,035,342	-				-0.5
4,035,342	-				-0.5
4,035,368	-				-0.9
4,035,394	+				-0.6
4,035,426	-				-1.6
4,035,455	-				+0.5
4,035,463	-				-0.6
4,035,463	-				+0.1
4,035,481	+				-2.0
4,035,481	+				+0.4
4,035,481	+				+0.3
4,035,482	-				-0.1
4,035,482	-				-0.3
4,035,487	+				-1.8
4,035,487	+				+0.2
4,035,487	+				-1.2
4,035,487	+				-0.2
4,035,487	+				-0.8
4,035,487	+				-0.1
4,035,487	+				-1.2
4,035,487	+				-1.3
4,035,487	+				+0.7
4,035,487	+				-0.1
4,035,487	+				+0.2
4,035,487	+				+0.9
4,035,487	+				-0.7
4,035,487	+				+1.7
4,035,487	+				+0.5
4,035,487	+				+0.5
4,035,488	-				-1.4
4,035,488	-				+0.9
4,035,488	-				+0.6
4,035,488	-				-2.1
4,035,488	-				-0.1
4,035,488	-				-0.3
4,035,488	-				-0.7
4,035,488	-				-0.6
4,035,505	+				-0.4
4,035,515	-				-0.1
4,035,515	-				-0.6
4,035,536	+				+1.5
4,035,546	+				-0.2
4,035,546	+				+1.5
4,035,546	+				-0.1
4,035,546	+				+1.1
4,035,546	+				+0.9
4,035,546	+				+1.9
4,035,546	+				+1.9
4,035,546	+				+0.1
4,035,546	+				-0.9
4,035,546	+				+0.3
4,035,546	+				-0.5
4,035,546	+				+0.5
4,035,546	+				+0.2
4,035,547	-				+0.5
4,035,547	-				-0.1
4,035,547	-				-0.3
4,035,547	-				-1.9
4,035,547	-				+0.9
4,035,547	-				+0.6
4,035,574	+				+2.3
4,035,575	-				-0.3
4,035,600	+				+0.1
4,035,600	+				-0.4
4,035,600	+				-0.9
4,035,600	+				+1.3
4,035,600	+				-0.6
4,035,600	+				-0.4
4,035,601	-				-0.5
4,035,601	-				-0.1
4,035,601	-				+0.2
4,035,606	+				-0.9
4,035,606	+				+1.3
4,035,606	+				-1.1
4,035,607	-				+2.4
4,035,626	-				+0.7
4,035,626	-				-1.8
4,035,634	+				-0.3
4,035,634	+				-1.4
4,035,634	+				+0.2
4,035,634	+				-0.6
4,035,634	+				+0.1
4,035,635	-				+0.2
4,035,635	-				-1.4
4,035,641	+				-0.1
4,035,642	-				+0.7
4,035,654	-				-0.2
4,035,695	-				-3.1
4,035,747	-				+0.1
4,035,915	-				-0.1
4,035,981	+				-0.1
4,035,981	+				+0.2
4,035,981	+				-1.5
4,035,982	-				-0.6
4,035,982	-				-0.2
4,035,982	-				-0.1
4,035,982	-				+0.9
4,035,982	-				+1.3
4,035,982	-				-0.2
4,035,982	-				+0.4
4,035,982	-				-1.1
4,036,043	+				-1.9
4,036,059	+				+0.1
4,036,059	+				+0.2
4,036,060	-				-0.9
4,036,060	-				-2.1
4,036,060	-				+0.9
4,036,146	+				-1.6
4,036,365	+		DZA65_RS18725	0.16	-0.5
4,036,365	+		DZA65_RS18725	0.16	+0.1
4,036,365	+		DZA65_RS18725	0.16	-0.1
4,036,366	-		DZA65_RS18725	0.16	-1.6
4,036,424	+		DZA65_RS18725	0.20	-0.2
4,036,424	+		DZA65_RS18725	0.20	-0.6
4,036,424	+		DZA65_RS18725	0.20	-1.4
4,036,424	+		DZA65_RS18725	0.20	+0.9
4,036,424	+		DZA65_RS18725	0.20	-0.2
4,036,424	+		DZA65_RS18725	0.20	-0.6
4,036,424	+		DZA65_RS18725	0.20	+0.4
4,036,424	+		DZA65_RS18725	0.20	-1.0
4,036,424	+		DZA65_RS18725	0.20	-0.1
4,036,424	+		DZA65_RS18725	0.20	-2.1
4,036,424	+		DZA65_RS18725	0.20	+1.1
4,036,425	-		DZA65_RS18725	0.20	-0.5
4,036,425	-		DZA65_RS18725	0.20	+0.4
4,036,425	-		DZA65_RS18725	0.20	-0.4
4,036,425	-		DZA65_RS18725	0.20	+1.8
4,036,425	-		DZA65_RS18725	0.20	-0.3
4,036,425	-		DZA65_RS18725	0.20	-0.4
4,036,436	+				-0.1
4,036,436	+		DZA65_RS18725	0.20	-0.6
4,036,461	-		DZA65_RS18725	0.22	+0.9
4,036,703	+		DZA65_RS18725	0.36	+0.9
4,036,703	+		DZA65_RS18725	0.36	-1.1
4,036,703	+		DZA65_RS18725	0.36	-0.2
4,036,725	-		DZA65_RS18725	0.37	-1.2
4,036,736	+		DZA65_RS18725	0.38	-1.2
4,036,737	-		DZA65_RS18725	0.38	-2.6
4,036,737	-		DZA65_RS18725	0.38	-1.2
4,037,211	-		DZA65_RS18725	0.66	-1.1
4,037,218	+		DZA65_RS18725	0.67	-0.3
4,037,218	+		DZA65_RS18725	0.67	+0.2
4,037,218	+		DZA65_RS18725	0.67	+1.5
4,037,218	+		DZA65_RS18725	0.67	+0.3
4,037,218	+		DZA65_RS18725	0.67	+0.7
4,037,218	+		DZA65_RS18725	0.67	+1.5
4,037,219	-		DZA65_RS18725	0.67	-0.9
4,037,219	-		DZA65_RS18725	0.67	-1.1
4,037,219	-		DZA65_RS18725	0.67	+0.5
4,037,219	-		DZA65_RS18725	0.67	-1.2
4,037,267	-		DZA65_RS18725	0.70	-0.1
4,037,327	+		DZA65_RS18725	0.73	-0.6
4,037,463	-		DZA65_RS18725	0.81	-1.4
4,037,517	+		DZA65_RS18725	0.84	+1.5
4,037,540	+		DZA65_RS18725	0.86	-0.7
4,037,540	+		DZA65_RS18725	0.86	-2.5
4,037,605	-		DZA65_RS18725	0.90	+0.2
4,037,635	+				-0.5
4,037,636	-				-0.1
4,037,639	+				+0.1
4,037,639	+				+0.4
4,037,639	+				+0.1
4,037,640	-				-0.9
4,037,640	-				+1.3
4,037,640	-				+0.9
4,037,640	-				+0.5
4,037,663	+				-0.6
4,037,663	+				+0.4
4,037,664	-				+0.3
4,037,664	-				+0.5
4,037,664	-				-1.5
4,037,664	-				+0.5
4,037,666	+				+0.4
4,037,666	+				-0.2
4,037,680	-				-0.4
4,037,694	+				-0.4
4,037,694	+				-0.8
4,037,695	-				-0.4
4,037,780	+				-1.1
4,037,780	+				+1.6
4,037,781	-				+0.2
4,037,801	-				-1.6
4,037,803	+				+0.2
4,037,803	+				+0.4
4,037,803	+				-1.4
4,037,803	+				+1.3
4,037,804	-				-2.4
4,037,820	-				+0.3
4,037,856	+				+0.8
4,037,857	-				-1.1
4,037,859	+				+0.7
4,037,876	+				-2.4
4,037,876	+				+0.1
4,037,876	+				+1.0
4,037,876	+				-1.4
4,037,876	+				+0.4
4,037,877	-				+1.7
4,037,877	-				-0.6
4,037,877	-				+0.5
4,037,900	+				-0.5
4,037,900	+				+0.1
4,037,901	-				+0.2
4,037,961	+				-0.4
4,037,961	+				+0.8
4,037,961	+				+1.3
4,038,000	+				-0.1
4,038,021	+				-1.5
4,038,039	+				-1.4
4,038,039	+				+2.4
4,038,040	-				-1.4
4,038,040	-				-2.1
4,038,065	+				-0.1
4,038,091	+				-0.9
4,038,091	+				+1.9
4,038,091	+				+1.3
4,038,092	-				+0.2
4,038,143	+				+1.2
4,038,143	+				-1.6
4,038,159	+				-0.6
4,038,160	-				-0.3
4,038,193	-				+0.9
4,038,229	+				+0.2
4,038,229	+				+0.7
4,038,229	+				-2.2
4,038,229	+				-1.1
4,038,229	+				+0.6
4,038,229	+				-0.2
4,038,229	+				-0.4
4,038,230	-				+0.4
4,038,235	+				+0.5
4,038,235	+				-0.6
4,038,235	+				+0.2
4,038,236	-				-0.3
4,038,236	-				-0.1
4,038,236	-				+0.8
4,038,322	-				-0.2
4,038,324	-				+0.7
4,038,327	+				+0.9
4,038,382	+				+1.2
4,038,382	+				-0.6
4,038,382	+				-1.2
4,038,382	+				+0.5
4,038,382	+				+1.3
4,038,382	+				-0.6
4,038,382	+				-1.1
4,038,382	+				+2.4
4,038,382	+				+0.3
4,038,383	-				+0.9
4,038,383	-				+2.7
4,038,383	-				-2.3
4,038,383	-				+0.9
4,038,383	-				-0.1
4,038,383	-				+0.2
4,038,383	-				+0.4
4,038,383	-				+0.7
4,038,383	-				+0.5
4,038,383	-				+0.6
4,038,383	-				-0.4
4,038,388	+				-2.5
4,038,421	+				+0.2
4,038,422	-				+0.5
4,038,511	-				+0.3
4,038,511	-				-0.6
4,038,593	+				+1.1
4,038,594	-				+0.2
4,038,712	+				+2.4
4,038,712	+				+0.9
4,038,712	+				+0.4
4,038,712	+				-1.1
4,038,712	+				+0.1
4,038,713	-				-0.9
4,038,713	-				+0.3
4,038,713	-				+0.6
4,038,713	-				+0.9
4,038,753	-				+0.4
4,038,775	+				+1.2
4,038,775	+				-0.6
4,038,775	+				+0.5
4,038,776	-				+0.6