Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18715

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,031,894	+		DZA65_RS18710	0.70	+0.8
4,031,895	-		DZA65_RS18710	0.70	-2.2
4,031,895	-		DZA65_RS18710	0.70	-0.3
4,031,895	-		DZA65_RS18710	0.70	-1.6
4,031,895	-		DZA65_RS18710	0.70	+0.1
4,032,273	+		DZA65_RS18710	0.82	-0.5
4,032,273	+		DZA65_RS18710	0.82	+0.6
4,032,274	-		DZA65_RS18710	0.82	+0.9
4,032,292	+		DZA65_RS18710	0.82	+1.0
4,032,293	-		DZA65_RS18710	0.82	+0.9
4,032,434	+				+1.9
4,032,434	+		DZA65_RS18710	0.87	+2.9
4,032,549	+				+1.4
4,032,549	+				+0.7
4,032,582	+				+0.9
4,032,640	-				+1.1
4,033,025	+		DZA65_RS18715	0.16	-0.6
4,033,055	+		DZA65_RS18715	0.19	+1.4
4,033,056	-				+0.9
4,033,056	-		DZA65_RS18715	0.19	-0.6
4,033,174	+		DZA65_RS18715	0.31	-1.4
4,033,174	+		DZA65_RS18715	0.31	+1.2
4,033,174	+		DZA65_RS18715	0.31	+1.4
4,033,174	+		DZA65_RS18715	0.31	+1.3
4,033,175	-		DZA65_RS18715	0.31	+1.4
4,033,175	-		DZA65_RS18715	0.31	+0.4
4,033,175	-		DZA65_RS18715	0.31	+0.4
4,033,247	-		DZA65_RS18715	0.38	+0.9
4,033,247	-		DZA65_RS18715	0.38	-2.5
4,033,274	-		DZA65_RS18715	0.41	+0.0
4,033,522	+		DZA65_RS18715	0.65	-1.1
4,033,522	+		DZA65_RS18715	0.65	-1.1
4,033,537	+		DZA65_RS18715	0.67	-1.2
4,033,703	+		DZA65_RS18715	0.83	+0.3
4,033,703	+		DZA65_RS18715	0.83	+0.4
4,033,726	+		DZA65_RS18715	0.86	+1.5
4,033,726	+		DZA65_RS18715	0.86	-0.9
4,033,727	-		DZA65_RS18715	0.86	-0.2
4,033,727	-		DZA65_RS18715	0.86	+1.3
4,033,727	-		DZA65_RS18715	0.86	-0.4
4,033,756	+		DZA65_RS18715	0.89	+0.2
4,033,756	+		DZA65_RS18715	0.89	-0.9
4,033,756	+		DZA65_RS18715	0.89	+0.8
4,033,756	+		DZA65_RS18715	0.89	+0.4
4,033,756	+		DZA65_RS18715	0.89	+1.5
4,033,756	+		DZA65_RS18715	0.89	+1.9
4,033,756	+		DZA65_RS18715	0.89	-0.8
4,033,756	+		DZA65_RS18715	0.89	+0.1
4,033,756	+		DZA65_RS18715	0.89	-1.6
4,033,756	+		DZA65_RS18715	0.89	+0.2
4,033,756	+		DZA65_RS18715	0.89	-0.9
4,033,757	-		DZA65_RS18715	0.89	-0.4
4,033,757	-		DZA65_RS18715	0.89	-0.4
4,033,757	-		DZA65_RS18715	0.89	+1.6
4,033,757	-		DZA65_RS18715	0.89	+0.9
4,033,784	+				+0.2
4,033,785	-				+3.0
4,033,801	+				+0.1
4,033,801	+				+0.9
4,033,802	-				-0.9
4,033,802	-				+0.6
4,033,804	+				-0.6
4,033,804	+				+0.1
4,033,804	+				+0.5
4,033,804	+				-0.1
4,033,804	+				+0.3
4,033,805	-				+0.3
4,033,805	-				+0.4
4,033,805	-				-0.2
4,033,805	-				+0.1
4,033,808	+				+1.4
4,033,809	-				+0.6
4,033,832	+				+0.3
4,033,832	+				-0.2
4,033,840	-				+0.9
4,033,854	-				-1.1
4,033,857	+				+0.9
4,033,857	+				-1.4
4,033,857	+				+0.6
4,033,857	+				+1.1
4,033,857	+				+0.1
4,033,857	+				+0.6
4,033,857	+				-0.4
4,033,857	+				+0.3
4,033,858	-				+0.9
4,033,858	-				+0.3
4,033,858	-				+0.2
4,033,858	-				-2.2
4,033,858	-				+0.5
4,033,858	-				-0.6
4,033,858	-				-0.3
4,033,858	-				+0.9
4,033,858	-				+0.2
4,033,858	-				+0.6
4,033,858	-				+0.1
4,033,858	-				-1.3
4,033,861	+				-0.9
4,033,868	+				-0.2
4,033,868	+				+0.1
4,033,887	+				-0.6
4,033,888	-				+1.9
4,033,888	-				+2.8
4,033,890	+				+0.7
4,033,890	+				+1.5
4,033,890	+				-0.1
4,033,890	+				-1.1
4,033,890	+				-1.1
4,033,890	+				+0.9
4,033,891	-				-2.1
4,033,891	-				+0.8
4,033,893	+				-1.6
4,033,893	+				-0.1
4,033,893	+				-1.6
4,033,893	+				-0.5
4,033,894	-				-1.1
4,033,894	-				+0.7
4,033,916	-				-1.2
4,033,930	+				+0.6
4,033,931	-				-0.9
4,033,931	-				-2.8
4,033,957	-				-0.6
4,033,957	-				-1.0
4,033,957	-				-1.3
4,033,961	-				+0.5
4,034,007	+				+0.8
4,034,063	+				+0.0
4,034,074	+				-0.6
4,034,077	+				-1.4
4,034,077	+				-1.1
4,034,100	-				-1.6
4,034,143	-				+0.4
4,034,151	+				+0.5
4,034,151	+				-0.5
4,034,152	-				-0.6
4,034,152	-				-1.0
4,034,263	+				+0.9
4,034,263	+				+0.1
4,034,263	+				-0.1
4,034,264	-				+0.4
4,034,273	+				+0.3
4,034,274	-				-0.1
4,034,304	+				+0.4
4,034,313	+				+0.6
4,034,313	+				-1.1
4,034,342	+				+0.6
4,034,373	+				-0.1
4,034,373	+				-2.1
4,034,373	+				-0.6
4,034,374	-				+0.1
4,034,374	-				+0.9
4,034,379	+				+0.4
4,034,379	+				-0.9
4,034,379	+				+0.1
4,034,380	-				+0.9
4,034,380	-				-0.1
4,034,380	-				+0.1
4,034,381	+				-0.6
4,034,381	+				-0.4
4,034,381	+				+1.2
4,034,381	+				+0.9
4,034,381	+				-1.1
4,034,381	+				-0.4
4,034,381	+				-0.1
4,034,381	+				-0.2
4,034,381	+				+0.1
4,034,382	-				+1.5
4,034,382	-				-1.4
4,034,382	-				+1.1
4,034,382	-				+0.2
4,034,382	-				-1.9
4,034,434	-				+0.4
4,034,484	+				+0.4
4,034,493	+				-0.4
4,034,494	-				-0.6
4,034,494	-				-0.4
4,034,501	+				-0.1
4,034,501	+				-0.6
4,034,501	+				-1.1
4,034,502	-				-0.9
4,034,502	-				+0.2
4,034,502	-				-0.0
4,034,507	+				-0.9
4,034,553	+				-0.3
4,034,553	+				+0.5
4,034,553	+				-1.1
4,034,554	-				-0.4
4,034,554	-				+1.7
4,034,554	-				-0.2
4,034,554	-				+2.3
4,034,561	-				+0.1
4,034,561	-				-0.2
4,034,561	-				-0.2
4,034,605	-				+0.9
4,034,613	+				+0.2
4,034,613	+				-0.1
4,034,614	-				+0.1
4,034,614	-				+1.2
4,034,614	-				+0.1
4,034,664	+				-0.2
4,034,665	-				+0.2
4,034,673	+				-1.1
4,034,674	-				+0.1
4,034,674	-				+1.4
4,034,674	-				-0.8
4,034,674	-				-0.6
4,034,733	+				-0.1
4,034,733	+				-1.9
4,034,733	+				+0.4
4,034,734	-				-1.1
4,034,741	+				-0.3
4,034,741	+				+0.9
4,034,742	-				+0.7
4,034,742	-				+0.4
4,034,784	+				-0.3
4,034,793	+				-0.1
4,034,793	+				+0.5
4,034,794	-				+1.3
4,034,794	-				+0.0
4,034,854	+				+0.9
4,034,854	+				+0.9
4,034,854	+				-1.4
4,034,855	-				-1.9
4,034,855	-				+0.5
4,034,855	-				-0.9
4,034,855	-				+0.0
4,034,861	+				-2.0