Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18400

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,963,936	+				-2.3
3,963,973	+				+0.5
3,963,973	+				-2.1
3,963,974	-				-1.5
3,963,974	-				+0.5
3,963,978	+				+0.2
3,963,978	+				-0.1
3,963,978	+				-0.2
3,963,978	+				-1.1
3,963,978	+				+0.7
3,963,979	-				+0.5
3,963,979	-				-0.4
3,963,979	-				-1.0
3,963,979	-				-0.2
3,963,979	-				-0.8
3,963,981	-				-0.1
3,963,981	-				-0.6
3,963,981	-				+0.0
3,963,988	+				-0.9
3,963,988	+				-0.1
3,963,988	+				-0.6
3,963,988	+				-0.5
3,963,989	-				-0.1
3,963,989	-				-0.1
3,963,989	-				+0.9
3,963,989	-				-1.0
3,963,989	-				+1.9
3,964,014	+				+0.5
3,964,014	+				+3.3
3,964,014	+				-0.9
3,964,014	+				-0.0
3,964,014	+				+0.9
3,964,014	+				+1.5
3,964,015	-				+1.4
3,964,015	-				-1.2
3,964,015	-				+0.5
3,964,015	-				-1.0
3,964,015	-				-2.6
3,964,015	-				+0.6
3,964,015	-				-0.6
3,964,015	-				+0.2
3,964,034	+				-1.3
3,964,034	+				+1.5
3,964,034	+				-2.0
3,964,034	+				+0.4
3,964,034	+				-0.4
3,964,035	-				-0.9
3,964,037	+				+1.2
3,964,037	+				-0.3
3,964,101	+		DZA65_RS18390	0.23	+0.5
3,964,101	+		DZA65_RS18390	0.23	+0.2
3,964,102	-		DZA65_RS18390	0.24	-0.9
3,964,102	-		DZA65_RS18390	0.24	-1.3
3,964,102	-		DZA65_RS18390	0.24	-0.5
3,964,102	-		DZA65_RS18390	0.24	-0.2
3,964,177	+		DZA65_RS18390	0.44	-0.3
3,964,177	+		DZA65_RS18390	0.44	-0.1
3,964,177	+		DZA65_RS18390	0.44	+1.2
3,964,177	+		DZA65_RS18390	0.44	-0.2
3,964,177	+		DZA65_RS18390	0.44	+0.2
3,964,177	+		DZA65_RS18390	0.44	+0.9
3,964,177	+		DZA65_RS18390	0.44	-0.5
3,964,177	+		DZA65_RS18390	0.44	-1.3
3,964,177	+		DZA65_RS18390	0.44	-0.6
3,964,177	+		DZA65_RS18390	0.44	-0.0
3,964,178	-		DZA65_RS18390	0.44	-0.5
3,964,178	-		DZA65_RS18390	0.44	-1.9
3,964,178	-		DZA65_RS18390	0.44	+0.4
3,964,178	-		DZA65_RS18390	0.44	+0.4
3,964,178	-		DZA65_RS18390	0.44	+0.2
3,964,178	-		DZA65_RS18390	0.44	+1.0
3,964,178	-		DZA65_RS18390	0.44	+0.4
3,964,178	-		DZA65_RS18390	0.44	-0.3
3,964,214	+		DZA65_RS18390	0.54	-1.2
3,964,214	+		DZA65_RS18390	0.54	-0.8
3,964,214	+		DZA65_RS18390	0.54	-0.7
3,964,214	+		DZA65_RS18390	0.54	-0.1
3,964,215	-		DZA65_RS18390	0.54	-1.7
3,964,215	-		DZA65_RS18390	0.54	-0.5
3,964,215	-		DZA65_RS18390	0.54	-1.3
3,964,215	-		DZA65_RS18390	0.54	+0.4
3,964,215	-		DZA65_RS18390	0.54	+0.9
3,964,247	+		DZA65_RS18390	0.63	-2.1
3,964,247	+		DZA65_RS18390	0.63	-0.1
3,964,247	+		DZA65_RS18390	0.63	+1.2
3,964,247	+		DZA65_RS18390	0.63	+1.5
3,964,247	+		DZA65_RS18390	0.63	-0.2
3,964,248	-		DZA65_RS18390	0.63	+0.1
3,964,248	-		DZA65_RS18390	0.63	-0.1
3,964,248	-		DZA65_RS18390	0.63	-0.1
3,964,248	-		DZA65_RS18390	0.63	-0.9
3,964,248	-		DZA65_RS18390	0.63	-0.7
3,964,248	-		DZA65_RS18390	0.63	-0.7
3,964,248	-		DZA65_RS18390	0.63	-0.9
3,964,248	-		DZA65_RS18390	0.63	-0.1
3,964,279	+		DZA65_RS18390	0.72	-0.9
3,964,279	+		DZA65_RS18390	0.72	+0.0
3,964,279	+		DZA65_RS18390	0.72	+0.2
3,964,279	+		DZA65_RS18390	0.72	+0.6
3,964,280	-				+0.5
3,964,280	-		DZA65_RS18390	0.72	-1.1
3,964,280	-		DZA65_RS18390	0.72	-0.7
3,964,280	-		DZA65_RS18390	0.72	-0.7
3,964,326	+		DZA65_RS18390	0.84	+0.2
3,964,326	+		DZA65_RS18390	0.84	+0.2
3,964,326	+		DZA65_RS18390	0.84	+0.1
3,964,326	+		DZA65_RS18390	0.84	+0.5
3,964,327	-		DZA65_RS18390	0.85	-1.0
3,964,327	-		DZA65_RS18390	0.85	-0.1
3,964,327	-		DZA65_RS18390	0.85	-1.3
3,964,327	-		DZA65_RS18390	0.85	-0.4
3,964,339	+		DZA65_RS18390	0.88	-0.9
3,964,340	-		DZA65_RS18390	0.88	-0.4
3,964,417	+				-0.7
3,964,417	+				+0.6
3,964,418	-				-0.2
3,964,425	+				-1.8
3,964,462	-		DZA65_RS18395	0.12	+0.9
3,964,531	+		DZA65_RS18395	0.37	+0.0
3,964,545	+		DZA65_RS18395	0.42	+0.5
3,964,545	+		DZA65_RS18395	0.42	-0.8
3,964,545	+		DZA65_RS18395	0.42	-1.7
3,964,545	+		DZA65_RS18395	0.42	-0.5
3,964,545	+		DZA65_RS18395	0.42	+1.4
3,964,546	-		DZA65_RS18395	0.42	-0.1
3,964,555	+		DZA65_RS18395	0.45	+0.6
3,964,555	+		DZA65_RS18395	0.45	-0.2
3,964,611	+		DZA65_RS18395	0.66	-1.5
3,964,675	-		DZA65_RS18395	0.89	-2.3
3,964,703	+				-0.8
3,964,703	+				+0.9
3,964,765	+				+0.1
3,964,766	-				+0.7
3,964,996	+		DZA65_RS18400	0.25	-0.5
3,965,024	+		DZA65_RS18400	0.29	-1.7
3,965,098	-		DZA65_RS18400	0.39	-0.6
3,965,098	-		DZA65_RS18400	0.39	+0.5
3,965,289	+		DZA65_RS18400	0.65	+1.3
3,965,306	-		DZA65_RS18400	0.68	-1.6
3,965,460	-		DZA65_RS18400	0.89	-1.1
3,965,527	+				+1.2
3,965,532	-				+3.0
3,965,545	-				-1.3
3,965,545	-				-0.4
3,965,547	+				-1.5
3,965,547	+				-1.2
3,965,547	+				+1.1
3,965,547	+				-0.7
3,965,548	-				-0.1
3,965,548	-				+0.0
3,965,548	-				+0.9
3,965,548	-				-1.0
3,965,548	-				-1.1
3,965,554	+				+0.3
3,965,554	+				-0.6
3,965,555	-				-0.0
3,965,555	-				+0.2
3,965,560	+				-0.4
3,965,560	+				-0.3
3,965,560	+				-0.5
3,965,560	+				-0.8
3,965,560	+				+0.9
3,965,560	+				+0.6
3,965,560	+				-1.9
3,965,560	+				-1.5
3,965,561	-				-1.5
3,965,561	-				-1.7
3,965,561	-				-0.5
3,965,561	-				+1.1
3,965,561	-				-0.9
3,965,561	-				-0.9
3,965,561	-				-0.2
3,965,561	-				+0.4
3,965,573	+				+0.7
3,965,573	+				+0.6
3,965,573	+				+0.9
3,965,573	+				-0.1
3,965,573	+				-0.7
3,965,573	+				-0.9
3,965,573	+				-0.1
3,965,574	-				-0.6
3,965,574	-				+0.3
3,965,969	+		DZA65_RS18405	0.13	-0.8
3,965,969	+		DZA65_RS18405	0.13	-1.5
3,965,969	+		DZA65_RS18405	0.13	-0.1
3,965,969	+		DZA65_RS18405	0.13	-1.5
3,965,969	+		DZA65_RS18405	0.13	-0.3
3,965,969	+		DZA65_RS18405	0.13	-0.5
3,965,970	-		DZA65_RS18405	0.13	-0.7
3,965,970	-		DZA65_RS18405	0.13	-1.1
3,965,970	-		DZA65_RS18405	0.13	+0.9
3,965,970	-		DZA65_RS18405	0.13	+0.9
3,965,986	-		DZA65_RS18405	0.14	+1.3
3,966,079	+		DZA65_RS18405	0.18	-0.5
3,966,079	+		DZA65_RS18405	0.18	+0.7
3,966,079	+		DZA65_RS18405	0.18	-1.3
3,966,080	-		DZA65_RS18405	0.18	-0.5
3,966,080	-		DZA65_RS18405	0.18	-0.1
3,966,082	+		DZA65_RS18405	0.18	+1.9
3,966,082	+		DZA65_RS18405	0.18	-1.9
3,966,082	+		DZA65_RS18405	0.18	+0.1
3,966,082	+		DZA65_RS18405	0.18	-0.1
3,966,173	+		DZA65_RS18405	0.22	+0.3
3,966,174	-		DZA65_RS18405	0.22	+0.5
3,966,174	-				+0.9
3,966,174	-		DZA65_RS18405	0.22	+0.5
3,966,176	+		DZA65_RS18405	0.22	-2.6
3,966,209	+		DZA65_RS18405	0.23	-2.5
3,966,210	-		DZA65_RS18405	0.23	+0.1
3,966,234	+		DZA65_RS18405	0.24	+0.9
3,966,365	-		DZA65_RS18405	0.29	+0.5
3,966,365	-				-1.1
3,966,365	-		DZA65_RS18405	0.29	+0.0
3,966,472	+		DZA65_RS18405	0.34	-2.5
3,966,473	-		DZA65_RS18405	0.34	-0.7
3,966,473	-		DZA65_RS18405	0.34	-1.0
3,966,473	-		DZA65_RS18405	0.34	-1.1
3,966,473	-		DZA65_RS18405	0.34	-0.3
3,966,473	-		DZA65_RS18405	0.34	-1.5