Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18300

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,948,364	+		DZA65_RS18295	0.65	-0.1
3,948,364	+		DZA65_RS18295	0.65	-1.9
3,948,365	-		DZA65_RS18295	0.65	-0.6
3,948,365	-		DZA65_RS18295	0.65	+0.0
3,948,365	-		DZA65_RS18295	0.65	+0.1
3,948,365	-		DZA65_RS18295	0.65	+0.4
3,948,486	-		DZA65_RS18295	0.72	+0.9
3,948,486	-		DZA65_RS18295	0.72	+0.0
3,948,486	-		DZA65_RS18295	0.72	+0.3
3,948,505	+		DZA65_RS18295	0.73	-0.7
3,948,506	-		DZA65_RS18295	0.73	-1.0
3,948,527	+		DZA65_RS18295	0.74	+0.9
3,948,527	+		DZA65_RS18295	0.74	-1.1
3,948,527	+		DZA65_RS18295	0.74	-1.9
3,948,527	+		DZA65_RS18295	0.74	+0.9
3,948,527	+		DZA65_RS18295	0.74	+0.1
3,948,528	-		DZA65_RS18295	0.74	+0.3
3,948,528	-		DZA65_RS18295	0.74	+0.0
3,948,528	-		DZA65_RS18295	0.74	+0.2
3,948,528	-		DZA65_RS18295	0.74	+0.3
3,948,528	-		DZA65_RS18295	0.74	-0.5
3,948,528	-		DZA65_RS18295	0.74	-0.0
3,948,528	-		DZA65_RS18295	0.74	-1.1
3,948,528	-		DZA65_RS18295	0.74	-0.6
3,948,528	-		DZA65_RS18295	0.74	-0.6
3,948,528	-		DZA65_RS18295	0.74	-0.3
3,948,553	+		DZA65_RS18295	0.76	-0.9
3,948,553	+		DZA65_RS18295	0.76	+0.0
3,948,567	-		DZA65_RS18295	0.77	-0.5
3,948,614	-		DZA65_RS18295	0.79	-0.4
3,948,731	+		DZA65_RS18295	0.86	+0.1
3,948,731	+		DZA65_RS18295	0.86	-0.5
3,948,757	+		DZA65_RS18295	0.88	+0.9
3,948,757	+		DZA65_RS18295	0.88	-0.3
3,948,757	+		DZA65_RS18295	0.88	-0.3
3,948,757	+		DZA65_RS18295	0.88	-1.1
3,948,757	+		DZA65_RS18295	0.88	-0.2
3,948,758	-		DZA65_RS18295	0.88	-0.5
3,948,758	-		DZA65_RS18295	0.88	-1.5
3,948,758	-		DZA65_RS18295	0.88	-1.5
3,948,758	-		DZA65_RS18295	0.88	-0.9
3,948,758	-		DZA65_RS18295	0.88	-0.7
3,948,760	+		DZA65_RS18295	0.88	-1.3
3,948,761	-		DZA65_RS18295	0.88	-0.0
3,948,865	-				-0.6
3,949,030	+				-1.7
3,949,031	-				-1.5
3,949,031	-				+0.5
3,949,031	-				-1.0
3,949,086	+				+1.9
3,949,086	+				+0.9
3,949,086	+				-0.4
3,949,086	+				-0.5
3,949,086	+				-1.4
3,949,086	+				+0.7
3,949,086	+				+0.1
3,949,086	+				-0.0
3,949,086	+				+0.2
3,949,086	+				+1.4
3,949,086	+				+0.2
3,949,086	+				-0.7
3,949,087	-				-1.4
3,949,087	-				-1.4
3,949,087	-				-1.8
3,949,087	-				+0.4
3,949,087	-				+2.7
3,949,087	-				-0.7
3,949,087	-				+0.4
3,949,087	-				+0.3
3,949,092	+				+0.4
3,949,092	+				+0.1
3,949,092	+				+0.1
3,949,093	-				+0.9
3,949,106	+				-1.3
3,949,106	+				+0.9
3,949,106	+				-1.5
3,949,106	+				+1.9
3,949,107	-				-0.7
3,949,110	+				-0.1
3,949,110	+				+0.3
3,949,110	+				+0.9
3,949,110	+				-0.6
3,949,110	+				+2.1
3,949,110	+				-0.1
3,949,110	+				+0.0
3,949,111	-				-1.5
3,949,111	-				-0.6
3,949,111	-				-0.1
3,949,111	-				-1.2
3,949,111	-				+0.2
3,949,123	+				+0.1
3,949,123	+				+0.1
3,949,123	+				-0.7
3,949,123	+				-0.2
3,949,124	-				+0.3
3,949,124	-				-0.5
3,949,124	-				+0.3
3,949,125	+				+0.1
3,949,125	+				-0.9
3,949,125	+				-0.5
3,949,125	+				+0.3
3,949,125	+				+0.4
3,949,125	+				-1.1
3,949,125	+				-1.5
3,949,125	+				-0.3
3,949,125	+				-0.4
3,949,126	-				-1.3
3,949,126	-				-1.9
3,949,126	-				+0.4
3,949,126	-				+1.2
3,949,126	-				-1.5
3,949,126	-				+0.1
3,949,126	-				-0.3
3,949,126	-				-0.5
3,949,126	-				-1.0
3,949,126	-				-1.9
3,949,126	-				-1.5
3,949,129	+				-0.3
3,949,129	+				+2.4
3,949,129	+				+0.3
3,949,129	+				-0.1
3,949,129	+				+0.2
3,949,237	+				-0.7
3,949,237	+				-0.4
3,949,269	+				-0.5
3,949,269	+				-1.2
3,949,269	+				+0.5
3,949,269	+				+0.5
3,949,269	+				-1.1
3,949,269	+				+0.6
3,949,269	+				+2.0
3,949,270	-				-0.7
3,949,270	-				+0.5
3,949,270	-				-1.3
3,949,270	-				-1.5
3,949,270	-				+1.9
3,949,275	+				-1.5
3,949,275	+				+0.4
3,949,275	+				-2.7
3,949,275	+				+0.8
3,949,276	-				-0.7
3,949,276	-				+3.0
3,949,276	-				-2.3
3,949,280	+				+0.7
3,949,280	+				-0.5
3,949,280	+				-1.7
3,949,280	+				+0.4
3,949,280	+				+0.1
3,949,280	+				-1.0
3,949,280	+				+0.1
3,949,280	+				-0.1
3,949,280	+				-0.7
3,949,280	+				-1.7
3,949,280	+				-1.5
3,949,281	-				-0.5
3,949,281	-				+0.3
3,949,281	-				-0.1
3,949,290	+				+1.6
3,949,291	-				-0.3
3,949,306	+				-0.1
3,949,306	+				+0.2
3,949,307	-				+0.6
3,949,315	+				+0.6
3,949,328	+				+0.9
3,949,328	+				+0.2
3,949,328	+				-0.5
3,949,328	+				-0.1
3,949,329	-				-0.3
3,949,378	+				+0.1
3,949,378	+				-2.1
3,949,423	+				-1.1
3,949,423	+				-0.5
3,949,423	+				+0.4
3,949,423	+				+0.1
3,949,423	+				+0.4
3,949,423	+				+0.3
3,949,424	-				-0.0
3,949,424	-				+0.7
3,949,424	-				+0.8
3,949,424	-				-0.2
3,949,562	+		DZA65_RS18300	0.31	-0.3
3,949,562	+		DZA65_RS18300	0.31	-0.9
3,949,562	+		DZA65_RS18300	0.31	+0.4
3,949,562	+		DZA65_RS18300	0.31	-2.5
3,949,562	+		DZA65_RS18300	0.31	+0.5
3,949,563	-		DZA65_RS18300	0.31	-1.3
3,949,563	-		DZA65_RS18300	0.31	+0.3
3,949,563	-		DZA65_RS18300	0.31	-1.5
3,949,563	-		DZA65_RS18300	0.31	-0.1
3,949,563	-				+1.9
3,949,563	-		DZA65_RS18300	0.31	-0.7
3,949,563	-		DZA65_RS18300	0.31	-2.3
3,949,592	+		DZA65_RS18300	0.36	-1.1
3,949,611	-		DZA65_RS18300	0.39	-0.3
3,949,611	-		DZA65_RS18300	0.39	-0.4
3,949,611	-		DZA65_RS18300	0.39	+0.3
3,949,611	-		DZA65_RS18300	0.39	-0.7
3,949,620	+		DZA65_RS18300	0.40	+0.4
3,949,620	+		DZA65_RS18300	0.40	-0.9
3,949,620	+		DZA65_RS18300	0.40	+1.3
3,949,620	+		DZA65_RS18300	0.40	+1.1
3,949,620	+		DZA65_RS18300	0.40	-2.8
3,949,620	+		DZA65_RS18300	0.40	-0.2
3,949,620	+		DZA65_RS18300	0.40	-0.7
3,949,620	+		DZA65_RS18300	0.40	-1.5
3,949,621	-		DZA65_RS18300	0.40	+2.4
3,949,621	-		DZA65_RS18300	0.40	-0.7
3,949,621	-		DZA65_RS18300	0.40	-0.6
3,949,621	-		DZA65_RS18300	0.40	+0.4
3,949,621	-		DZA65_RS18300	0.40	-0.7
3,949,621	-		DZA65_RS18300	0.40	-2.5
3,949,621	-		DZA65_RS18300	0.40	-0.6
3,949,621	-		DZA65_RS18300	0.40	-0.7
3,949,621	-		DZA65_RS18300	0.40	-1.0
3,949,621	-		DZA65_RS18300	0.40	-0.1
3,949,621	-		DZA65_RS18300	0.40	+1.5
3,949,621	-		DZA65_RS18300	0.40	+0.3
3,949,621	-		DZA65_RS18300	0.40	-0.5
3,949,621	-		DZA65_RS18300	0.40	-0.5
3,949,621	-		DZA65_RS18300	0.40	-0.7
3,949,680	+		DZA65_RS18300	0.49	-0.6
3,949,680	+		DZA65_RS18300	0.49	+0.3
3,949,680	+		DZA65_RS18300	0.49	+0.3
3,949,681	-		DZA65_RS18300	0.50	-0.5
3,949,681	-		DZA65_RS18300	0.50	+0.0
3,949,681	-		DZA65_RS18300	0.50	-0.3
3,949,681	-		DZA65_RS18300	0.50	+0.0
3,949,681	-		DZA65_RS18300	0.50	-1.1
3,949,681	-		DZA65_RS18300	0.50	+1.1
3,949,685	+		DZA65_RS18300	0.50	+0.5
3,949,685	+		DZA65_RS18300	0.50	-0.6
3,949,685	+		DZA65_RS18300	0.50	+0.2
3,949,735	+		DZA65_RS18300	0.58	+0.9
3,949,735	+		DZA65_RS18300	0.58	+3.2
3,949,736	-		DZA65_RS18300	0.58	-0.2
3,949,759	+		DZA65_RS18300	0.62	-0.5
3,949,767	-		DZA65_RS18300	0.63	+1.4
3,949,767	-		DZA65_RS18300	0.63	-1.0
3,949,781	+		DZA65_RS18300	0.65	-2.5
3,949,781	+		DZA65_RS18300	0.65	+1.0
3,949,781	+		DZA65_RS18300	0.65	-0.6
3,949,781	+		DZA65_RS18300	0.65	+0.1
3,949,781	+		DZA65_RS18300	0.65	-1.1
3,949,781	+		DZA65_RS18300	0.65	+0.3
3,949,781	+		DZA65_RS18300	0.65	-1.1
3,949,781	+		DZA65_RS18300	0.65	-1.3
3,949,781	+		DZA65_RS18300	0.65	-0.1
3,949,781	+		DZA65_RS18300	0.65	-0.4
3,949,781	+		DZA65_RS18300	0.65	-0.3
3,949,781	+		DZA65_RS18300	0.65	-0.6
3,949,782	-		DZA65_RS18300	0.65	-0.9
3,949,782	-		DZA65_RS18300	0.65	+0.5
3,949,782	-		DZA65_RS18300	0.65	+0.1
3,949,782	-		DZA65_RS18300	0.65	-0.6
3,949,782	-		DZA65_RS18300	0.65	-0.1
3,949,782	-		DZA65_RS18300	0.65	-0.7
3,949,782	-		DZA65_RS18300	0.65	-0.1
3,949,782	-		DZA65_RS18300	0.65	-0.8
3,949,782	-		DZA65_RS18300	0.65	+1.0
3,949,782	-		DZA65_RS18300	0.65	-1.1
3,949,782	-		DZA65_RS18300	0.65	-0.3
3,949,782	-		DZA65_RS18300	0.65	-1.9
3,949,782	-		DZA65_RS18300	0.65	-1.1
3,949,782	-		DZA65_RS18300	0.65	+1.7
3,949,782	-		DZA65_RS18300	0.65	-0.6
3,949,782	-		DZA65_RS18300	0.65	-1.1
3,949,782	-		DZA65_RS18300	0.65	-1.7
3,949,782	-		DZA65_RS18300	0.65	-1.0
3,949,823	+		DZA65_RS18300	0.72	-0.5
3,949,823	+		DZA65_RS18300	0.72	+1.0
3,949,824	-		DZA65_RS18300	0.72	-0.1
3,949,824	-		DZA65_RS18300	0.72	-0.8
3,949,824	-		DZA65_RS18300	0.72	-0.7
3,949,824	-		DZA65_RS18300	0.72	-1.7
3,949,824	-		DZA65_RS18300	0.72	-2.3
3,949,904	+		DZA65_RS18300	0.85	-0.3
3,949,905	-		DZA65_RS18300	0.85	+0.4
3,949,932	-		DZA65_RS18300	0.89	+1.3
3,949,932	-		DZA65_RS18300	0.89	-1.4
3,949,932	-		DZA65_RS18300	0.89	-0.1
3,949,955	+				-0.4
3,949,955	+				+1.5
3,949,955	+				-0.3
3,949,956	-				+0.5
3,950,016	+				-1.3
3,950,078	+				-2.3
3,950,078	+				-1.3
3,950,078	+				-0.8
3,950,078	+				-0.1
3,950,079	-				-0.7
3,950,091	-				+1.6
3,950,091	-				-0.6
3,950,244	+				+0.9
3,950,244	+				-1.5
3,950,244	+				+0.3
3,950,244	+				-0.5
3,950,244	+				-0.7
3,950,244	+				+0.5
3,950,244	+				+1.9
3,950,245	-				-1.5
3,950,245	-				+1.2
3,950,245	-				-1.4
3,950,245	-				-1.6
3,950,245	-				+0.0
3,950,245	-				-2.6
3,950,245	-				-0.7
3,950,246	+				-1.9
3,950,246	+				+0.4
3,950,246	+				-0.1
3,950,246	+				+1.8
3,950,247	-				+1.6
3,950,249	+				-0.1
3,950,249	+				-0.2
3,950,249	+				+1.2
3,950,250	-				-1.5
3,950,250	-				-0.7
3,950,306	+				+0.9
3,950,307	-				-0.4
3,950,307	-				-0.9
3,950,307	-				-0.5
3,950,601	-		DZA65_RS18310	0.19	-0.7
3,950,659	+		DZA65_RS18310	0.23	-0.5
3,950,728	+		DZA65_RS18310	0.28	-1.9
3,950,728	+		DZA65_RS18310	0.28	+0.9
3,950,728	+		DZA65_RS18310	0.28	-0.7
3,950,787	+		DZA65_RS18310	0.33	+0.3
3,950,890	+		DZA65_RS18310	0.41	+1.3
3,950,891	-		DZA65_RS18310	0.41	-0.6
3,950,891	-		DZA65_RS18310	0.41	+0.3
3,950,894	+		DZA65_RS18310	0.41	+1.9
3,950,894	+		DZA65_RS18310	0.41	-2.1
3,950,895	-		DZA65_RS18310	0.41	-1.7
3,950,895	-				-0.1