Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18185

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,918,650	+		DZA65_RS18180	0.32	+1.4
3,918,651	-		DZA65_RS18180	0.32	+1.3
3,918,802	+		DZA65_RS18180	0.43	+1.4
3,918,803	-		DZA65_RS18180	0.43	-0.2
3,918,803	-		DZA65_RS18180	0.43	+0.8
3,918,803	-		DZA65_RS18180	0.43	-0.7
3,918,803	-		DZA65_RS18180	0.43	-1.0
3,918,803	-		DZA65_RS18180	0.43	+0.6
3,918,803	-		DZA65_RS18180	0.43	-1.7
3,918,803	-		DZA65_RS18180	0.43	-1.0
3,918,946	-		DZA65_RS18180	0.54	-1.2
3,919,051	+		DZA65_RS18180	0.62	-1.4
3,919,051	+		DZA65_RS18180	0.62	-0.2
3,919,052	-		DZA65_RS18180	0.62	+0.1
3,919,084	+		DZA65_RS18180	0.64	+0.3
3,919,085	-		DZA65_RS18180	0.64	+0.3
3,919,115	+		DZA65_RS18180	0.66	-0.2
3,919,117	+		DZA65_RS18180	0.66	+0.1
3,919,117	+		DZA65_RS18180	0.66	-1.6
3,919,117	+		DZA65_RS18180	0.66	-2.2
3,919,117	+		DZA65_RS18180	0.66	+0.4
3,919,117	+		DZA65_RS18180	0.66	-1.6
3,919,117	+		DZA65_RS18180	0.66	+0.6
3,919,117	+		DZA65_RS18180	0.66	-1.4
3,919,117	+		DZA65_RS18180	0.66	-0.3
3,919,117	+		DZA65_RS18180	0.66	+0.8
3,919,117	+		DZA65_RS18180	0.66	-2.0
3,919,117	+		DZA65_RS18180	0.66	+1.4
3,919,117	+		DZA65_RS18180	0.66	-0.9
3,919,117	+		DZA65_RS18180	0.66	-0.4
3,919,117	+		DZA65_RS18180	0.66	+0.4
3,919,117	+		DZA65_RS18180	0.66	+0.2
3,919,118	-		DZA65_RS18180	0.66	-0.2
3,919,118	-		DZA65_RS18180	0.66	+0.4
3,919,118	-		DZA65_RS18180	0.66	+0.4
3,919,118	-		DZA65_RS18180	0.66	-1.5
3,919,118	-		DZA65_RS18180	0.66	-0.2
3,919,118	-		DZA65_RS18180	0.66	+0.1
3,919,118	-		DZA65_RS18180	0.66	-0.0
3,919,118	-		DZA65_RS18180	0.66	+0.8
3,919,126	+		DZA65_RS18180	0.67	+2.0
3,919,345	-		DZA65_RS18180	0.83	-0.2
3,919,390	+		DZA65_RS18180	0.86	-2.2
3,919,390	+		DZA65_RS18180	0.86	-1.5
3,919,390	+		DZA65_RS18180	0.86	-0.5
3,919,390	+		DZA65_RS18180	0.86	-2.0
3,919,390	+		DZA65_RS18180	0.86	-1.0
3,919,391	-		DZA65_RS18180	0.86	+0.4
3,919,391	-		DZA65_RS18180	0.86	+0.3
3,919,391	-		DZA65_RS18180	0.86	-2.9
3,919,391	-		DZA65_RS18180	0.86	+1.3
3,919,457	+				-0.9
3,919,471	+				-1.0
3,919,472	-				-0.7
3,919,472	-				+0.5
3,919,472	-				-1.4
3,919,472	-				+0.6
3,919,472	-				-0.7
3,919,514	-				-0.2
3,919,565	+				-0.4
3,919,565	+				-0.2
3,919,566	-				-0.1
3,919,606	+				-0.3
3,919,606	+				-1.3
3,919,606	+				-1.2
3,919,607	-				+1.2
3,919,608	+				-0.3
3,919,608	+				+0.8
3,919,608	+				-0.0
3,919,608	+				-0.5
3,919,608	+				+1.3
3,919,608	+				-1.7
3,919,609	-				-0.4
3,919,609	-				+0.3
3,919,624	+				+0.0
3,919,625	-				+0.3
3,919,625	-				+0.1
3,919,625	-				+1.4
3,919,689	+				+1.2
3,919,689	+				-0.2
3,919,689	+				+0.8
3,919,689	+				+0.6
3,919,689	+				-0.6
3,919,690	-				-0.7
3,919,690	-				-1.3
3,919,690	-				-0.5
3,919,690	-				+0.0
3,919,690	-				-0.2
3,919,690	-				+0.5
3,919,729	+				-1.7
3,919,730	-				-0.0
3,919,730	-				-0.7
3,919,730	-				-0.5
3,919,731	+		DZA65_RS18185	0.10	-1.0
3,919,731	+		DZA65_RS18185	0.10	+0.2
3,919,731	+		DZA65_RS18185	0.10	-0.2
3,919,732	-		DZA65_RS18185	0.10	-0.6
3,919,732	-		DZA65_RS18185	0.10	-0.6
3,919,906	+		DZA65_RS18185	0.23	-0.6
3,919,914	+		DZA65_RS18185	0.24	-0.7
3,919,914	+		DZA65_RS18185	0.24	-0.3
3,919,914	+		DZA65_RS18185	0.24	+0.3
3,919,914	+		DZA65_RS18185	0.24	-0.6
3,919,914	+		DZA65_RS18185	0.24	+0.5
3,919,914	+		DZA65_RS18185	0.24	+0.3
3,919,914	+		DZA65_RS18185	0.24	-0.4
3,919,914	+		DZA65_RS18185	0.24	-1.0
3,919,914	+		DZA65_RS18185	0.24	+0.1
3,919,915	-		DZA65_RS18185	0.24	-0.6
3,919,915	-		DZA65_RS18185	0.24	-0.8
3,919,915	-		DZA65_RS18185	0.24	+0.8
3,919,915	-		DZA65_RS18185	0.24	-0.4
3,919,915	-		DZA65_RS18185	0.24	+0.3
3,919,915	-		DZA65_RS18185	0.24	+1.5
3,919,915	-		DZA65_RS18185	0.24	-1.0
3,919,915	-		DZA65_RS18185	0.24	-0.7
3,919,915	-				-1.5
3,919,915	-		DZA65_RS18185	0.24	+2.4
3,919,918	+		DZA65_RS18185	0.24	+0.3
3,919,918	+		DZA65_RS18185	0.24	+1.2
3,919,918	+		DZA65_RS18185	0.24	-0.7
3,919,918	+		DZA65_RS18185	0.24	+0.4
3,919,919	-		DZA65_RS18185	0.24	-1.2
3,919,919	-		DZA65_RS18185	0.24	+0.9
3,919,948	+		DZA65_RS18185	0.26	-0.3
3,919,949	-		DZA65_RS18185	0.26	+0.1
3,919,949	-		DZA65_RS18185	0.26	+1.3
3,919,949	-		DZA65_RS18185	0.26	-0.3
3,919,969	+		DZA65_RS18185	0.28	-0.8
3,919,969	+		DZA65_RS18185	0.28	+0.1
3,919,970	-		DZA65_RS18185	0.28	-1.5
3,920,084	+		DZA65_RS18185	0.36	+0.8
3,920,085	-		DZA65_RS18185	0.36	+1.3
3,920,115	+		DZA65_RS18185	0.38	-0.3
3,920,115	+		DZA65_RS18185	0.38	-0.7
3,920,115	+		DZA65_RS18185	0.38	-0.8
3,920,115	+		DZA65_RS18185	0.38	-0.4
3,920,115	+		DZA65_RS18185	0.38	+2.1
3,920,116	-		DZA65_RS18185	0.39	-1.2
3,920,116	-		DZA65_RS18185	0.39	-0.5
3,920,116	-		DZA65_RS18185	0.39	-1.0
3,920,131	+		DZA65_RS18185	0.40	-2.0
3,920,131	+		DZA65_RS18185	0.40	+0.7
3,920,132	-		DZA65_RS18185	0.40	-0.5
3,920,134	+		DZA65_RS18185	0.40	-0.5
3,920,135	-		DZA65_RS18185	0.40	+0.5
3,920,135	-		DZA65_RS18185	0.40	-0.2
3,920,142	+		DZA65_RS18185	0.40	-0.9
3,920,142	+		DZA65_RS18185	0.40	+0.2
3,920,142	+		DZA65_RS18185	0.40	+3.2
3,920,143	-		DZA65_RS18185	0.41	+0.3
3,920,143	-		DZA65_RS18185	0.41	-0.0
3,920,143	-		DZA65_RS18185	0.41	-0.1
3,920,164	-		DZA65_RS18185	0.42	-0.3
3,920,175	+		DZA65_RS18185	0.43	+0.2
3,920,176	-		DZA65_RS18185	0.43	+0.2
3,920,176	-		DZA65_RS18185	0.43	+1.2
3,920,213	-		DZA65_RS18185	0.46	-0.6
3,920,213	-		DZA65_RS18185	0.46	-0.5
3,920,372	-		DZA65_RS18185	0.57	-2.2
3,920,455	+		DZA65_RS18185	0.64	+0.8
3,920,469	+		DZA65_RS18185	0.65	+0.2
3,920,488	+		DZA65_RS18185	0.66	-0.2
3,920,489	-		DZA65_RS18185	0.66	+1.6
3,920,489	-		DZA65_RS18185	0.66	-1.0
3,920,582	-		DZA65_RS18185	0.73	-1.2
3,920,582	-		DZA65_RS18185	0.73	-1.3
3,920,593	+		DZA65_RS18185	0.74	-0.3
3,920,593	+		DZA65_RS18185	0.74	+0.0
3,920,593	+		DZA65_RS18185	0.74	-0.4
3,920,653	+		DZA65_RS18185	0.78	+1.1
3,920,685	+		DZA65_RS18185	0.81	-1.5
3,920,685	+		DZA65_RS18185	0.81	-1.0
3,920,685	+		DZA65_RS18185	0.81	+0.2
3,920,686	-		DZA65_RS18185	0.81	+0.0
3,920,686	-		DZA65_RS18185	0.81	-0.7
3,920,686	-		DZA65_RS18185	0.81	+2.8
3,920,686	-		DZA65_RS18185	0.81	-0.1
3,920,738	+		DZA65_RS18185	0.84	-0.0
3,920,739	-		DZA65_RS18185	0.85	+0.1
3,920,745	+		DZA65_RS18185	0.85	-0.6
3,920,745	+		DZA65_RS18185	0.85	+0.6
3,920,745	+		DZA65_RS18185	0.85	-0.9
3,920,745	+		DZA65_RS18185	0.85	-0.1
3,920,745	+		DZA65_RS18185	0.85	+0.4
3,920,746	-		DZA65_RS18185	0.85	-0.9
3,920,746	-		DZA65_RS18185	0.85	-0.5
3,920,746	-		DZA65_RS18185	0.85	+0.3
3,920,746	-		DZA65_RS18185	0.85	-1.2
3,920,746	-		DZA65_RS18185	0.85	-1.0
3,920,746	-		DZA65_RS18185	0.85	-0.7
3,920,772	+		DZA65_RS18185	0.87	-0.7
3,920,772	+		DZA65_RS18185	0.87	-0.7
3,920,772	+		DZA65_RS18185	0.87	-1.5
3,920,772	+		DZA65_RS18185	0.87	-2.6
3,920,772	+		DZA65_RS18185	0.87	+0.2
3,920,772	+		DZA65_RS18185	0.87	-1.3
3,920,773	-		DZA65_RS18185	0.87	-0.4
3,920,773	-				-0.2
3,920,773	-		DZA65_RS18185	0.87	-0.4
3,920,773	-		DZA65_RS18185	0.87	-0.6
3,920,773	-		DZA65_RS18185	0.87	-1.2
3,920,773	-		DZA65_RS18185	0.87	+0.3
3,920,791	+		DZA65_RS18185	0.88	-0.2
3,920,792	-		DZA65_RS18185	0.88	+0.3
3,920,851	-				-0.2
3,920,851	-				+0.1
3,920,851	-				-1.2
3,920,870	-				-1.7
3,920,892	+				-1.5
3,920,915	+				+0.1
3,920,915	+				+0.8
3,920,915	+				+0.1
3,920,915	+				-1.7
3,920,916	-				-0.2
3,920,918	+				+0.5
3,920,919	-				+0.6
3,920,919	-				-0.7
3,920,919	-				+0.8
3,920,941	+				-1.5
3,920,959	-				-0.7
3,920,959	-				+0.4
3,920,959	-				-1.7
3,920,976	-				+1.6
3,920,994	-				-2.0
3,921,006	+				-0.3
3,921,006	+				-0.4
3,921,006	+				+0.2
3,921,006	+				-0.7
3,921,006	+				-0.4
3,921,007	-				+2.4
3,921,007	-				+0.1
3,921,007	-				+0.7
3,921,007	-				-0.9
3,921,007	-				+0.5
3,921,007	-				-0.0
3,921,007	-				-0.2
3,921,017	+				+0.6
3,921,121	+				-0.4
3,921,121	+				-0.6
3,921,121	+				-0.6
3,921,121	+				-1.0
3,921,122	-				-0.2
3,921,122	-				+0.7
3,921,123	+				-1.7
3,921,124	-				+0.2
3,921,301	+				-1.2
3,921,321	+				-0.2
3,921,321	+				-0.7
3,921,321	+				+0.8
3,921,321	+				-0.7
3,921,321	+				-0.3
3,921,321	+				+0.7
3,921,321	+				-1.5
3,921,321	+				+0.7
3,921,321	+				+0.2
3,921,322	-				+1.3
3,921,322	-				+1.8
3,921,406	+				-0.2
3,921,406	+				+0.7
3,921,406	+				+0.5
3,921,407	-				+0.3
3,921,408	+				-0.4
3,921,409	-				+0.0
3,921,409	-				-1.9
3,921,409	-				+0.7
3,921,430	+				-0.8
3,921,431	-				+0.1
3,921,433	+				+0.8
3,921,433	+				+0.4
3,921,434	-				+1.8
3,921,463	+				+0.8
3,921,464	-				+0.6
3,921,465	+				-1.3
3,921,465	+				-1.2
3,921,465	+				+0.4
3,921,465	+				-0.4
3,921,465	+				+0.4
3,921,466	-				-0.3
3,921,466	-				+0.6
3,921,466	-				-0.7
3,921,471	+				+3.3
3,921,472	-				+1.4
3,921,481	+				+0.2
3,921,481	+				+0.1
3,921,481	+				+0.0
3,921,482	-				-1.2
3,921,482	-				-1.0
3,921,482	-				-0.1
3,921,482	-				-0.5
3,921,482	-				+1.0
3,921,482	-				+0.4
3,921,482	-				+1.3
3,921,482	-				-0.9
3,921,482	-				-1.2
3,921,482	-				-1.5
3,921,483	+				+0.1
3,921,483	+				-0.6
3,921,483	+				-1.5
3,921,483	+				+1.4
3,921,483	+				-1.7
3,921,484	-				+0.5
3,921,484	-				+0.8
3,921,484	-				+0.2
3,921,484	-				+0.6
3,921,484	-				+0.0
3,921,484	-				-0.0
3,921,484	-				-0.2
3,921,484	-				+0.1
3,921,486	-				-1.4
3,921,486	-				-1.2
3,921,597	+				-1.7
3,921,597	+				+0.1
3,921,597	+				-0.5
3,921,597	+				-0.8
3,921,597	+				-2.2
3,921,597	+				-2.5
3,921,597	+				+0.3
3,921,597	+				-1.2
3,921,608	+				-1.5
3,921,608	+				+0.1
3,921,608	+				+0.3
3,921,613	+				+0.7
3,921,613	+				+0.7
3,921,613	+				-0.2
3,921,613	+				+0.1
3,921,613	+				+1.4
3,921,613	+				-0.4
3,921,613	+				-2.3
3,921,613	+				-1.2
3,921,613	+				-1.2
3,921,613	+				-0.4
3,921,613	+				-0.3
3,921,613	+				-0.3
3,921,613	+				+0.1
3,921,613	+				+0.1
3,921,613	+				-1.2
3,921,613	+				+0.1
3,921,613	+				+0.3
3,921,613	+				-0.4
3,921,614	-				-0.2
3,921,614	-				-1.2
3,921,614	-				-0.0
3,921,614	-				+0.4
3,921,614	-				+0.3
3,921,614	-				-1.2
3,921,614	-				-0.3
3,921,614	-				-1.0
3,921,614	-				+0.7
3,921,614	-				+0.8
3,921,614	-				+0.2
3,921,614	-				+0.4
3,921,614	-				-0.4
3,921,614	-				-2.6
3,921,614	-				-0.4
3,921,614	-				-1.0
3,921,614	-				-0.5
3,921,614	-				+0.2
3,921,614	-				-1.6
3,921,614	-				-0.6
3,921,637	+				-0.1
3,921,637	+				-0.2
3,921,638	-				-2.3
3,921,638	-				+0.6
3,921,675	-				-0.5
3,921,675	-				+0.8
3,921,675	-				-0.3
3,921,675	-				+1.5
3,921,675	-				-2.5
3,921,676	+				-0.7
3,921,676	+				-0.6
3,921,676	+				-1.0
3,921,676	+				+0.7
3,921,676	+				-2.3
3,921,676	+				-0.3
3,921,677	-				-1.5
3,921,677	-				-0.2
3,921,677	-				-0.3
3,921,677	-				-0.4
3,921,677	-				-0.2
3,921,677	-				+1.8
3,921,778	-				-1.3
3,921,778	-				+2.1
3,921,801	+		DZA65_RS18190	0.11	-0.1
3,921,801	+		DZA65_RS18190	0.11	-0.8
3,921,801	+		DZA65_RS18190	0.11	-0.2