Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17915

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,855,881	+		DZA65_RS17910	0.53	+1.6
3,855,881	+		DZA65_RS17910	0.53	-0.4
3,855,899	+		DZA65_RS17910	0.54	+0.6
3,855,899	+		DZA65_RS17910	0.54	-0.5
3,855,922	-		DZA65_RS17910	0.55	+1.1
3,855,937	+		DZA65_RS17910	0.56	-0.3
3,855,938	-		DZA65_RS17910	0.56	+0.1
3,855,938	-		DZA65_RS17910	0.56	+0.5
3,855,938	-		DZA65_RS17910	0.56	-0.7
3,855,972	+		DZA65_RS17910	0.59	-1.7
3,855,973	-		DZA65_RS17910	0.59	+0.2
3,855,973	-		DZA65_RS17910	0.59	+0.3
3,855,973	-		DZA65_RS17910	0.59	-0.1
3,855,975	-		DZA65_RS17910	0.59	-0.4
3,856,027	+		DZA65_RS17910	0.62	-0.2
3,856,027	+		DZA65_RS17910	0.62	-1.0
3,856,027	+		DZA65_RS17910	0.62	-0.5
3,856,058	+		DZA65_RS17910	0.64	-0.7
3,856,059	-		DZA65_RS17910	0.64	-0.3
3,856,059	-		DZA65_RS17910	0.64	-0.7
3,856,059	-		DZA65_RS17910	0.64	-0.5
3,856,059	-		DZA65_RS17910	0.64	-1.6
3,856,102	-		DZA65_RS17910	0.67	-0.7
3,856,102	-		DZA65_RS17910	0.67	-0.7
3,856,102	-		DZA65_RS17910	0.67	-0.8
3,856,102	-		DZA65_RS17910	0.67	+0.1
3,856,102	-		DZA65_RS17910	0.67	+0.1
3,856,116	+		DZA65_RS17910	0.68	-0.6
3,856,128	+		DZA65_RS17910	0.69	-0.3
3,856,128	+		DZA65_RS17910	0.69	-0.9
3,856,128	+		DZA65_RS17910	0.69	-1.0
3,856,128	+		DZA65_RS17910	0.69	+0.4
3,856,128	+		DZA65_RS17910	0.69	-0.0
3,856,130	+				+1.4
3,856,131	-		DZA65_RS17910	0.69	-0.7
3,856,304	+		DZA65_RS17910	0.80	-1.7
3,856,305	-		DZA65_RS17910	0.80	-1.3
3,856,305	-		DZA65_RS17910	0.80	-0.2
3,856,376	+		DZA65_RS17910	0.85	+1.3
3,856,387	-		DZA65_RS17910	0.86	+0.2
3,856,410	+		DZA65_RS17910	0.87	+0.8
3,856,410	+		DZA65_RS17910	0.87	-0.2
3,856,410	+		DZA65_RS17910	0.87	-0.2
3,856,410	+		DZA65_RS17910	0.87	-0.3
3,856,410	+				+0.8
3,856,411	-		DZA65_RS17910	0.87	-0.6
3,856,411	-		DZA65_RS17910	0.87	+0.4
3,856,411	-		DZA65_RS17910	0.87	-0.5
3,856,411	-		DZA65_RS17910	0.87	+2.8
3,856,411	-		DZA65_RS17910	0.87	-0.5
3,856,411	-		DZA65_RS17910	0.87	+0.1
3,856,411	-		DZA65_RS17910	0.87	+0.1
3,856,458	+				+0.1
3,856,458	+				-0.2
3,856,459	-				-0.2
3,856,459	-				+0.6
3,856,459	-				+0.1
3,856,459	-				-0.2
3,856,608	+				-0.6
3,856,626	+				+0.1
3,856,651	-				-1.5
3,856,651	-				-1.0
3,856,651	-				+1.8
3,856,651	-				-0.5
3,856,651	-				-0.6
3,856,691	+				+0.0
3,856,692	-				+0.3
3,856,767	+				-0.9
3,856,767	+				+1.8
3,856,767	+				-0.5
3,856,768	-				+0.8
3,856,768	-				+1.3
3,856,768	-				+0.0
3,856,920	+		DZA65_RS17915	0.19	+0.8
3,856,920	+		DZA65_RS17915	0.19	+0.1
3,856,920	+		DZA65_RS17915	0.19	+1.0
3,856,921	-		DZA65_RS17915	0.19	-2.2
3,856,921	-		DZA65_RS17915	0.19	-0.4
3,856,921	-		DZA65_RS17915	0.19	-0.4
3,856,921	-		DZA65_RS17915	0.19	+1.3
3,856,926	+		DZA65_RS17915	0.19	+1.3
3,856,926	+		DZA65_RS17915	0.19	-0.2
3,856,927	-		DZA65_RS17915	0.19	+1.8
3,856,938	+		DZA65_RS17915	0.20	-0.9
3,856,938	+		DZA65_RS17915	0.20	-0.7
3,856,938	+		DZA65_RS17915	0.20	+0.4
3,856,938	+		DZA65_RS17915	0.20	-0.2
3,856,938	+		DZA65_RS17915	0.20	+1.1
3,856,938	+				+1.4
3,856,938	+		DZA65_RS17915	0.20	+0.1
3,856,939	-		DZA65_RS17915	0.20	-1.2
3,856,939	-		DZA65_RS17915	0.20	+2.6
3,856,939	-		DZA65_RS17915	0.20	-0.7
3,856,939	-		DZA65_RS17915	0.20	-0.7
3,856,939	-		DZA65_RS17915	0.20	-0.9
3,856,939	-		DZA65_RS17915	0.20	+0.3
3,856,941	-		DZA65_RS17915	0.21	+0.8
3,856,941	-		DZA65_RS17915	0.21	-0.9
3,856,941	-		DZA65_RS17915	0.21	-0.6
3,857,100	+		DZA65_RS17915	0.35	-0.3
3,857,100	+		DZA65_RS17915	0.35	-0.1
3,857,100	+		DZA65_RS17915	0.35	+0.0
3,857,100	+				+0.8
3,857,100	+		DZA65_RS17915	0.35	-0.3
3,857,101	-		DZA65_RS17915	0.35	+0.1
3,857,101	-		DZA65_RS17915	0.35	+0.4
3,857,101	-		DZA65_RS17915	0.35	+0.8
3,857,101	-		DZA65_RS17915	0.35	+2.6
3,857,101	-		DZA65_RS17915	0.35	-0.9
3,857,122	-		DZA65_RS17915	0.37	+0.8
3,857,289	-		DZA65_RS17915	0.52	-0.2
3,857,418	-		DZA65_RS17915	0.64	+0.8
3,857,418	-		DZA65_RS17915	0.64	+1.3
3,857,418	-		DZA65_RS17915	0.64	-1.7
3,857,418	-		DZA65_RS17915	0.64	+2.1
3,857,629	-		DZA65_RS17915	0.82	-0.3
3,857,632	-		DZA65_RS17915	0.83	-1.2
3,857,643	+		DZA65_RS17915	0.84	+3.3
3,857,643	+		DZA65_RS17915	0.84	+0.8
3,857,644	-		DZA65_RS17915	0.84	-1.0
3,857,644	-		DZA65_RS17915	0.84	-2.3
3,857,644	-		DZA65_RS17915	0.84	-0.4
3,857,646	+		DZA65_RS17915	0.84	-0.2
3,857,646	+		DZA65_RS17915	0.84	-0.6
3,857,646	+		DZA65_RS17915	0.84	+0.8
3,857,646	+		DZA65_RS17915	0.84	+0.3
3,857,646	+		DZA65_RS17915	0.84	+0.5
3,857,646	+		DZA65_RS17915	0.84	+0.0
3,857,646	+				-1.2
3,857,646	+		DZA65_RS17915	0.84	-0.9
3,857,646	+		DZA65_RS17915	0.84	-0.2
3,857,646	+		DZA65_RS17915	0.84	+0.2
3,857,646	+		DZA65_RS17915	0.84	+0.6
3,857,646	+		DZA65_RS17915	0.84	+0.0
3,857,647	-		DZA65_RS17915	0.84	-1.7
3,857,647	-		DZA65_RS17915	0.84	+0.8
3,857,647	-		DZA65_RS17915	0.84	+0.5
3,857,647	-		DZA65_RS17915	0.84	-0.2
3,857,688	+		DZA65_RS17915	0.88	+0.1
3,857,688	+		DZA65_RS17915	0.88	+0.1
3,857,743	-				+0.5
3,857,748	+				-1.0
3,857,748	+				+1.1
3,857,749	-				-0.6
3,857,777	+				-2.3
3,857,777	+				-0.4
3,857,777	+				-0.2
3,857,777	+				+0.6
3,857,777	+				+0.5
3,857,777	+				-0.3
3,857,777	+				-1.0
3,857,777	+				+0.5
3,857,777	+				-0.6
3,857,777	+				+0.8
3,857,777	+				-3.5
3,857,777	+				+0.0
3,857,777	+				+0.5
3,857,778	-				+1.8
3,857,778	-				+0.2
3,857,778	-				-1.1
3,857,778	-				-0.2
3,857,778	-				-0.1
3,857,778	-				+0.3
3,857,778	-				-0.3
3,857,778	-				+0.1
3,857,778	-				+1.8
3,857,778	-				+0.6
3,857,778	-				-1.9
3,857,778	-				+2.1
3,857,778	-				-0.5
3,857,778	-				-0.5
3,857,778	-				-0.1
3,857,778	-				-1.2
3,857,778	-				-0.2
3,857,809	+				+0.1
3,857,809	+				+0.3
3,857,809	+				-0.2
3,857,810	-				-1.7
3,857,810	-				+0.1
3,857,810	-				-0.2
3,857,837	+				-1.5
3,857,838	-				+0.3
3,857,857	+				-0.7
3,857,857	+				+0.8
3,857,858	-				-1.2
3,857,858	-				+1.4
3,857,858	-				-0.3
3,857,862	+				+0.1
3,857,862	+				-0.6
3,857,862	+				-0.7
3,857,862	+				-0.0
3,857,862	+				+0.0
3,857,862	+				-1.7
3,857,862	+				+0.3
3,857,863	-				-1.5
3,857,863	-				+0.4
3,857,863	-				-1.7
3,857,863	-				-1.5
3,857,863	-				-0.7
3,857,863	-				-0.9
3,857,863	-				+0.3
3,857,863	-				-1.5
3,857,876	+				-0.2
3,857,894	+				+0.6
3,857,895	-				-0.7
3,857,905	-				+1.0
3,857,908	+				+1.2
3,857,908	+				-0.7
3,857,908	+				+0.1
3,857,908	+				-1.2
3,857,908	+				-0.7
3,857,908	+				+0.1
3,857,908	+				+0.5
3,857,908	+				+0.8
3,857,908	+				+0.0
3,857,908	+				-1.4
3,857,908	+				+0.5
3,857,908	+				+0.5
3,857,908	+				-0.7
3,857,908	+				-0.3
3,857,909	-				+0.2
3,857,909	-				+0.2
3,857,909	-				+0.3
3,857,909	-				+0.2
3,857,909	-				-0.2
3,857,909	-				+0.4
3,857,909	-				+0.3
3,857,909	-				+0.1
3,857,909	-				+0.1
3,857,909	-				-0.2
3,857,909	-				-0.3
3,857,909	-				+0.0
3,857,909	-				+0.3
3,857,911	+				-1.3
3,857,911	+				-1.5
3,857,911	+				+1.8
3,857,911	+				-0.9
3,857,912	-				-0.3
3,857,912	-				+1.2
3,857,912	-				-0.6
3,857,912	-				+0.8
3,857,912	-				-1.0
3,857,912	-				+0.6
3,857,912	-				-0.4
3,857,912	-				+0.2
3,857,912	-				-1.9
3,857,913	+				-0.2
3,857,913	+				-0.3
3,857,913	+				-0.2
3,857,913	+				+0.8
3,857,913	+				+1.0
3,857,913	+				+2.8
3,857,913	+				-0.3
3,857,913	+				-0.2
3,857,914	-				+0.3
3,857,925	-				+0.4
3,857,958	+				-0.8
3,857,958	+				-0.3
3,857,958	+				+1.6
3,857,958	+				+0.7
3,857,958	+				+1.4
3,857,958	+				-0.3
3,857,958	+				-0.4
3,857,958	+				-2.0
3,857,958	+				-1.0
3,857,958	+				+1.2
3,857,958	+				-2.5
3,857,958	+				-1.7
3,857,958	+				+1.8
3,857,958	+				-1.5
3,857,958	+				-1.5
3,857,958	+				-0.4
3,857,959	-				+0.2
3,857,959	-				-1.5
3,857,959	-				-0.7
3,857,959	-				+0.3
3,857,959	-				-0.2
3,857,959	-				+0.0
3,857,959	-				+0.8
3,857,959	-				-0.4
3,857,959	-				-2.3
3,858,002	-				+0.3
3,858,027	+				-1.1
3,858,027	+				+1.8
3,858,027	+				-0.2
3,858,027	+				-0.4
3,858,027	+				+0.4
3,858,027	+				-1.0
3,858,028	-				-1.4
3,858,028	-				-0.4
3,858,028	-				+0.8
3,858,065	+				-2.6
3,858,066	-				-0.3
3,858,071	+				-2.9
3,858,071	+				-0.7
3,858,076	+				+0.5
3,858,076	+				-2.6
3,858,076	+				+0.2
3,858,076	+				-0.6
3,858,076	+				-1.4
3,858,076	+				-0.7
3,858,076	+				-1.0
3,858,076	+				+0.4
3,858,077	-				-2.0
3,858,077	-				-1.1
3,858,077	-				+1.8
3,858,077	-				-1.6
3,858,077	-				-1.0
3,858,122	+		DZA65_RS17920	0.13	-1.3
3,858,122	+		DZA65_RS17920	0.13	+1.3
3,858,122	+		DZA65_RS17920	0.13	-0.4
3,858,123	-		DZA65_RS17920	0.13	-2.0
3,858,123	-				+1.8
3,858,123	-		DZA65_RS17920	0.13	-1.4
3,858,123	-		DZA65_RS17920	0.13	-1.3
3,858,123	-				+0.8
3,858,177	-		DZA65_RS17920	0.26	+1.1
3,858,209	+		DZA65_RS17920	0.34	-0.3
3,858,289	+		DZA65_RS17920	0.52	-0.2
3,858,364	+		DZA65_RS17920	0.70	-1.0
3,858,365	-		DZA65_RS17920	0.70	+0.1
3,858,395	+		DZA65_RS17920	0.77	-0.2
3,858,395	+		DZA65_RS17920	0.77	+1.4
3,858,395	+		DZA65_RS17920	0.77	+0.0
3,858,395	+		DZA65_RS17920	0.77	-1.6
3,858,395	+		DZA65_RS17920	0.77	+1.7
3,858,396	-		DZA65_RS17920	0.77	+1.3
3,858,396	-		DZA65_RS17920	0.77	-0.2
3,858,396	-		DZA65_RS17920	0.77	-0.3
3,858,410	+		DZA65_RS17920	0.81	-1.2
3,858,431	+		DZA65_RS17920	0.86	+2.1
3,858,431	+		DZA65_RS17920	0.86	-0.4
3,858,431	+		DZA65_RS17920	0.86	-0.8
3,858,431	+		DZA65_RS17920	0.86	-0.2
3,858,432	-		DZA65_RS17920	0.86	-0.4
3,858,432	-		DZA65_RS17920	0.86	-0.5
3,858,432	-		DZA65_RS17920	0.86	+0.1
3,858,432	-		DZA65_RS17920	0.86	-0.6
3,858,432	-		DZA65_RS17920	0.86	-1.7
3,858,489	+				+0.4
3,858,489	+				+0.2
3,858,489	+				+0.3
3,858,530	+				+0.9
3,858,530	+				+1.8
3,858,531	-				-0.0
3,858,531	-				-0.4
3,858,551	+				+1.4
3,858,552	-				-0.3
3,858,628	+				-0.5
3,858,628	+				+0.0
3,858,629	-				-0.6
3,858,751	+		DZA65_RS17925	0.24	+0.6
3,858,751	+		DZA65_RS17925	0.24	-1.6
3,858,751	+		DZA65_RS17925	0.24	-0.2
3,858,752	-		DZA65_RS17925	0.24	-0.4
3,858,752	-		DZA65_RS17925	0.24	-0.1
3,858,752	-		DZA65_RS17925	0.24	+0.1
3,858,752	-		DZA65_RS17925	0.24	-0.6
3,858,752	-		DZA65_RS17925	0.24	+0.3
3,858,782	-		DZA65_RS17925	0.28	-1.5
3,858,782	-		DZA65_RS17925	0.28	+1.1
3,858,785	-		DZA65_RS17925	0.29	-0.8