Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17845

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,839,489	+		DZA65_RS17840	0.29	+0.3
3,839,671	-		DZA65_RS17840	0.42	+0.3
3,839,756	+		DZA65_RS17840	0.48	+0.5
3,839,756	+		DZA65_RS17840	0.48	-0.5
3,839,757	-		DZA65_RS17840	0.48	+0.8
3,839,757	-		DZA65_RS17840	0.48	+1.0
3,839,757	-		DZA65_RS17840	0.48	-0.2
3,839,757	-		DZA65_RS17840	0.48	+0.8
3,839,757	-		DZA65_RS17840	0.48	-0.9
3,839,757	-		DZA65_RS17840	0.48	+1.8
3,839,757	-		DZA65_RS17840	0.48	+0.0
3,839,757	-		DZA65_RS17840	0.48	-0.3
3,839,873	+		DZA65_RS17840	0.56	+0.8
3,839,874	-		DZA65_RS17840	0.57	-0.3
3,839,914	-		DZA65_RS17840	0.59	+0.4
3,839,934	+		DZA65_RS17840	0.61	+2.7
3,839,935	-		DZA65_RS17840	0.61	-1.6
3,839,992	+		DZA65_RS17840	0.65	+1.8
3,839,993	-		DZA65_RS17840	0.65	-2.5
3,840,023	+		DZA65_RS17840	0.67	+0.8
3,840,024	-		DZA65_RS17840	0.67	+0.4
3,840,113	+		DZA65_RS17840	0.73	+0.8
3,840,113	+		DZA65_RS17840	0.73	-1.3
3,840,113	+		DZA65_RS17840	0.73	+0.8
3,840,114	-		DZA65_RS17840	0.74	+0.3
3,840,114	-		DZA65_RS17840	0.74	-1.0
3,840,114	-		DZA65_RS17840	0.74	-0.2
3,840,114	-		DZA65_RS17840	0.74	-1.1
3,840,114	-		DZA65_RS17840	0.74	+1.1
3,840,114	-		DZA65_RS17840	0.74	+0.8
3,840,114	-		DZA65_RS17840	0.74	-1.2
3,840,117	+		DZA65_RS17840	0.74	+0.2
3,840,117	+		DZA65_RS17840	0.74	-0.2
3,840,117	+		DZA65_RS17840	0.74	+1.1
3,840,117	+		DZA65_RS17840	0.74	-0.7
3,840,117	+		DZA65_RS17840	0.74	-0.6
3,840,117	+		DZA65_RS17840	0.74	-0.6
3,840,117	+		DZA65_RS17840	0.74	-1.3
3,840,118	-		DZA65_RS17840	0.74	+1.8
3,840,118	-		DZA65_RS17840	0.74	+0.2
3,840,118	-		DZA65_RS17840	0.74	-0.2
3,840,118	-		DZA65_RS17840	0.74	-0.3
3,840,118	-		DZA65_RS17840	0.74	+0.4
3,840,363	+				+0.8
3,840,363	+				-0.7
3,840,363	+				-0.2
3,840,364	-				+0.3
3,840,364	-				-2.2
3,840,364	-				+0.3
3,840,364	-				+0.8
3,840,364	-				+0.2
3,840,364	-				+1.0
3,840,364	-				+3.0
3,840,364	-				+0.5
3,840,483	+				-0.7
3,840,483	+				+0.8
3,840,484	-				-1.3
3,840,484	-				+1.3
3,840,484	-				+0.5
3,840,538	+		DZA65_RS17845	0.14	+0.8
3,840,538	+		DZA65_RS17845	0.14	+2.7
3,840,538	+		DZA65_RS17845	0.14	-0.6
3,840,539	-		DZA65_RS17845	0.14	+1.7
3,840,539	-		DZA65_RS17845	0.14	+0.0
3,840,619	+		DZA65_RS17845	0.35	-0.6
3,840,641	-		DZA65_RS17845	0.41	+1.8
3,840,705	-		DZA65_RS17845	0.58	-0.1
3,840,739	-		DZA65_RS17845	0.67	+0.7
3,840,862	+				-0.7
3,840,888	+				+2.8
3,840,889	-				-0.7
3,840,889	-				+0.8
3,840,918	-				-0.3
3,840,943	+				-0.5
3,840,955	+				-1.3
3,840,955	+				-0.5
3,840,955	+				+0.6
3,840,955	+				-0.2
3,840,955	+				-1.2
3,840,955	+				-0.2
3,840,955	+				+0.4
3,840,955	+				-0.6
3,840,955	+				+0.5
3,840,955	+				-0.0
3,840,955	+				+0.5
3,840,955	+				-0.1
3,840,956	-				+0.8
3,840,956	-				-0.5
3,840,956	-				-0.2
3,840,956	-				+0.1
3,840,956	-				-1.1
3,840,956	-				+0.5
3,840,956	-				+0.1
3,840,956	-				+1.4
3,840,956	-				-1.5
3,840,958	+				-0.2
3,840,958	+				-0.4
3,840,958	+				+0.3
3,840,959	-				-0.2
3,840,959	-				-0.0
3,840,959	-				+0.5
3,840,959	-				-0.2
3,840,959	-				+0.1
3,840,959	-				+0.2
3,841,033	+				-0.5
3,841,033	+				-0.6
3,841,033	+				+0.4
3,841,034	-				-2.0
3,841,034	-				-0.4
3,841,034	-				-0.4
3,841,034	-				-0.2
3,841,042	+				+0.8
3,841,042	+				-1.7
3,841,054	+				+0.4
3,841,054	+				+0.7
3,841,054	+				-0.3
3,841,055	-				-1.0
3,841,055	-				+0.2
3,841,055	-				+1.5
3,841,055	-				-0.2
3,841,055	-				+2.4
3,841,058	+				-1.4
3,841,058	+				+0.2
3,841,059	-				+0.7
3,841,059	-				-0.9
3,841,097	+				+0.4
3,841,100	+				+0.6
3,841,100	+				+0.7
3,841,100	+				-0.7
3,841,100	+				+0.2
3,841,100	+				-2.2
3,841,100	+				+0.2
3,841,100	+				+0.6
3,841,100	+				+1.8
3,841,100	+				-0.7
3,841,101	-				-2.3
3,841,101	-				-0.7
3,841,101	-				+2.0
3,841,101	-				+1.3
3,841,101	-				+0.4
3,841,101	-				-1.0
3,841,101	-				+0.5
3,841,101	-				+0.9
3,841,101	-				+0.7
3,841,101	-				+2.4
3,841,101	-				+0.0
3,841,101	-				+0.7
3,841,101	-				+0.4
3,841,101	-				+0.8
3,841,104	+				+0.5
3,841,104	+				-2.0
3,841,104	+				-0.2
3,841,104	+				+0.5
3,841,104	+				-2.0
3,841,104	+				+0.1
3,841,104	+				-1.0
3,841,104	+				-0.2
3,841,104	+				-1.0
3,841,104	+				-1.1
3,841,105	-				+0.3
3,841,105	-				-0.5
3,841,105	-				-0.2
3,841,105	-				-2.1
3,841,105	-				-0.7
3,841,105	-				-0.3
3,841,105	-				+1.1
3,841,105	-				+0.3
3,841,105	-				-1.2
3,841,105	-				+0.3
3,841,105	-				-1.2
3,841,107	+				+0.8
3,841,107	+				+0.3
3,841,107	+				+0.5
3,841,107	+				+0.5
3,841,108	-				-0.4
3,841,108	-				+1.3
3,841,110	+				+0.1
3,841,110	+				+0.2
3,841,110	+				-0.2
3,841,110	+				+0.1
3,841,110	+				+0.4
3,841,110	+				-1.3
3,841,110	+				-0.2
3,841,110	+				-0.3
3,841,110	+				-0.2
3,841,111	-				+2.4
3,841,111	-				-0.2
3,841,111	-				-1.2
3,841,111	-				-1.2
3,841,113	+				+1.2
3,841,113	+				-0.7
3,841,113	+				-1.5
3,841,113	+				-1.7
3,841,114	-				-0.6
3,841,114	-				+1.4
3,841,114	-				-0.3
3,841,131	+				-0.0
3,841,131	+				+0.3
3,841,131	+				-0.5
3,841,132	-				-1.2
3,841,140	+				-0.6
3,841,141	-				+0.0
3,841,141	-				+0.3
3,841,141	-				-1.0
3,841,142	+				+0.1
3,841,142	+				-0.7
3,841,142	+				+0.7
3,841,142	+				-1.2
3,841,142	+				+0.1
3,841,142	+				-0.4
3,841,142	+				+1.0
3,841,142	+				+0.7
3,841,142	+				-0.7
3,841,142	+				-1.0
3,841,142	+				-0.7
3,841,142	+				+1.0
3,841,142	+				-2.5
3,841,142	+				-0.1
3,841,142	+				+0.8
3,841,142	+				-0.9
3,841,142	+				+1.1
3,841,142	+				-1.5
3,841,142	+				+0.8
3,841,142	+				-0.7
3,841,143	-				+0.4
3,841,143	-				+0.1
3,841,143	-				+1.8
3,841,143	-				+0.1
3,841,143	-				-2.3
3,841,143	-				+0.4
3,841,143	-				+0.0
3,841,143	-				+0.8
3,841,143	-				-1.5
3,841,143	-				-1.7
3,841,143	-				-0.2
3,841,143	-				-0.9
3,841,143	-				+0.8
3,841,143	-				+1.4
3,841,143	-				-1.0
3,841,143	-				-0.1
3,841,143	-				-0.3
3,841,143	-				+0.3
3,841,143	-				-3.7
3,841,143	-				-0.3
3,841,143	-				-0.5
3,841,146	+				-0.2
3,841,146	+				+0.4
3,841,146	+				+1.4
3,841,146	+				-0.2
3,841,146	+				+0.2
3,841,146	+				+1.1
3,841,146	+				-0.4
3,841,146	+				+0.1
3,841,146	+				+2.0
3,841,146	+				+1.5
3,841,146	+				+0.7
3,841,146	+				-2.0
3,841,146	+				-0.4
3,841,146	+				-0.8
3,841,147	-				+1.3
3,841,147	-				-0.1
3,841,147	-				-0.3
3,841,147	-				-1.5
3,841,147	-				-0.5
3,841,147	-				-0.0
3,841,147	-				+1.3
3,841,147	-				-0.1
3,841,147	-				+0.0
3,841,147	-				+0.1
3,841,147	-				-0.5
3,841,147	-				-2.6
3,841,147	-				-0.7
3,841,147	-				-0.2
3,841,147	-				-0.9
3,841,147	-				+1.2
3,841,147	-				+0.4
3,841,147	-				+1.3
3,841,147	-				+0.1
3,841,147	-				+0.3
3,841,147	-				-0.0
3,841,150	+				-0.2
3,841,150	+				-0.1
3,841,150	+				+0.8
3,841,151	-				-0.7
3,841,151	-				-0.5
3,841,151	-				-0.9
3,841,242	+				-1.0
3,841,242	+				-0.7
3,841,242	+				+0.2
3,841,242	+				+2.1
3,841,242	+				+0.0
3,841,242	+				+0.8
3,841,243	-				-0.1
3,841,243	-				-0.1
3,841,243	-				+0.4
3,841,243	-				+1.4
3,841,309	+		DZA65_RS17850	0.16	+0.8
3,841,371	+		DZA65_RS17850	0.23	+0.8
3,841,371	+		DZA65_RS17850	0.23	+1.8
3,841,371	+		DZA65_RS17850	0.23	-0.2
3,841,372	-		DZA65_RS17850	0.23	-0.7
3,841,441	+		DZA65_RS17850	0.30	+1.0
3,841,441	+		DZA65_RS17850	0.30	+0.3
3,841,441	+		DZA65_RS17850	0.30	-0.5
3,841,441	+		DZA65_RS17850	0.30	-0.2
3,841,441	+		DZA65_RS17850	0.30	-0.2
3,841,441	+		DZA65_RS17850	0.30	+0.1
3,841,441	+		DZA65_RS17850	0.30	+0.1
3,841,442	-		DZA65_RS17850	0.30	-0.7
3,841,442	-		DZA65_RS17850	0.30	+0.8
3,841,442	-		DZA65_RS17850	0.30	-2.0
3,841,442	-		DZA65_RS17850	0.30	-2.5
3,841,444	-				+1.4
3,841,444	-				+0.4
3,841,444	-		DZA65_RS17850	0.30	-0.7
3,841,518	+		DZA65_RS17850	0.38	-1.2
3,841,518	+		DZA65_RS17850	0.38	-0.7
3,841,518	+		DZA65_RS17850	0.38	-0.3
3,841,518	+		DZA65_RS17850	0.38	+0.1
3,841,519	-		DZA65_RS17850	0.38	+0.1
3,841,521	+		DZA65_RS17850	0.38	+0.0
3,841,521	+		DZA65_RS17850	0.38	-0.3
3,841,521	+		DZA65_RS17850	0.38	+1.6
3,841,522	-		DZA65_RS17850	0.39	-0.2
3,841,522	-		DZA65_RS17850	0.39	+0.4
3,841,522	-		DZA65_RS17850	0.39	-0.3
3,841,533	+		DZA65_RS17850	0.40	-0.5
3,841,593	+		DZA65_RS17850	0.46	+0.8
3,841,593	+		DZA65_RS17850	0.46	-0.7
3,841,593	+		DZA65_RS17850	0.46	+1.4
3,841,594	-		DZA65_RS17850	0.46	-0.0
3,841,594	-		DZA65_RS17850	0.46	-0.2
3,841,594	-				+1.4
3,841,631	+		DZA65_RS17850	0.50	+0.7
3,841,631	+		DZA65_RS17850	0.50	+2.2
3,841,631	+		DZA65_RS17850	0.50	+0.0
3,841,632	-		DZA65_RS17850	0.50	-2.0
3,841,632	-		DZA65_RS17850	0.50	+4.1
3,841,632	-		DZA65_RS17850	0.50	-0.2
3,841,632	-		DZA65_RS17850	0.50	-1.7
3,841,632	-		DZA65_RS17850	0.50	+0.6
3,841,632	-		DZA65_RS17850	0.50	+1.2
3,841,632	-		DZA65_RS17850	0.50	+1.0
3,841,632	-		DZA65_RS17850	0.50	-0.0
3,841,637	+		DZA65_RS17850	0.51	-0.4
3,841,637	+		DZA65_RS17850	0.51	+0.8
3,841,678	+		DZA65_RS17850	0.55	+0.3
3,841,678	+		DZA65_RS17850	0.55	-0.7
3,841,678	+		DZA65_RS17850	0.55	+0.0
3,841,679	-		DZA65_RS17850	0.55	-0.7
3,841,722	+		DZA65_RS17850	0.60	-1.2
3,841,722	+		DZA65_RS17850	0.60	+0.4
3,841,723	-		DZA65_RS17850	0.60	+1.1
3,841,723	-		DZA65_RS17850	0.60	+0.8
3,841,723	-		DZA65_RS17850	0.60	+0.7
3,841,828	+		DZA65_RS17850	0.71	+0.6
3,841,829	-				+0.3
3,841,829	-		DZA65_RS17850	0.71	+0.3
3,841,829	-		DZA65_RS17850	0.71	-1.2
3,841,829	-		DZA65_RS17850	0.71	-1.6
3,841,829	-		DZA65_RS17850	0.71	+0.3
3,841,854	+		DZA65_RS17850	0.74	+1.1
3,841,855	-		DZA65_RS17850	0.74	+0.8
3,841,860	+		DZA65_RS17850	0.74	+0.3
3,841,861	-		DZA65_RS17850	0.74	+0.5
3,841,861	-		DZA65_RS17850	0.74	-0.1
3,841,861	-		DZA65_RS17850	0.74	+0.4