Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17605

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,793,284	+		DZA65_RS17590	0.80	-0.8
3,793,284	+		DZA65_RS17590	0.80	+0.2
3,793,342	-		DZA65_RS17590	0.85	+1.0
3,793,365	+		DZA65_RS17590	0.87	+0.3
3,793,365	+		DZA65_RS17590	0.87	-1.0
3,793,409	+				+1.1
3,793,409	+				+1.1
3,793,443	-				+1.0
3,793,443	-				-0.8
3,793,473	+				-1.3
3,793,473	+				-2.1
3,793,473	+				+0.2
3,793,473	+				-0.2
3,793,473	+				-1.6
3,793,473	+				-1.2
3,793,473	+				-0.3
3,793,473	+				+1.1
3,793,473	+				+1.1
3,793,473	+				-2.6
3,793,474	-				+0.2
3,793,474	-				-0.5
3,793,474	-				-1.0
3,793,474	-				-0.2
3,793,474	-				-0.5
3,793,474	-				-0.8
3,793,474	-				+0.8
3,793,474	-				-0.0
3,793,474	-				+1.0
3,793,474	-				+1.7
3,793,521	+				+0.8
3,793,522	-				-1.0
3,793,522	-				-0.0
3,793,522	-				+1.1
3,793,604	+				-0.7
3,793,604	+				-0.5
3,793,604	+				+0.4
3,793,604	+				+1.0
3,793,605	-				+0.8
3,793,638	+				+0.8
3,793,716	+				+1.8
3,793,719	+				-0.9
3,793,719	+				+0.4
3,793,719	+				+2.4
3,793,719	+				+0.1
3,793,719	+				+1.3
3,793,720	-				+0.4
3,793,720	-				-0.6
3,793,720	-				+1.8
3,793,720	-				-0.4
3,793,720	-				-0.3
3,793,720	-				-2.8
3,793,720	-				+2.0
3,793,720	-				+2.1
3,793,797	-		DZA65_RS17595	0.26	+0.3
3,793,879	+		DZA65_RS17595	0.52	-0.2
3,793,879	+				+0.8
3,793,879	+		DZA65_RS17595	0.52	-2.0
3,793,879	+		DZA65_RS17595	0.52	-0.6
3,793,880	-		DZA65_RS17595	0.52	-1.8
3,793,880	-		DZA65_RS17595	0.52	-0.4
3,793,880	-		DZA65_RS17595	0.52	-0.8
3,793,902	-		DZA65_RS17595	0.60	-0.9
3,793,969	+		DZA65_RS17595	0.81	+1.1
3,793,970	-		DZA65_RS17595	0.82	-2.3
3,793,970	-		DZA65_RS17595	0.82	+0.8
3,794,002	-				-2.3
3,794,011	+				-0.2
3,794,011	+				-0.8
3,794,019	+				-1.1
3,794,020	-				-1.1
3,794,021	+				+1.3
3,794,021	+				-0.8
3,794,022	-				-0.1
3,794,022	-				-2.6
3,794,022	-				+0.2
3,794,022	-				-0.8
3,794,022	-				-0.9
3,794,039	-				+0.5
3,794,041	+				-0.8
3,794,041	+				-1.3
3,794,042	-				-0.2
3,794,051	-				-0.8
3,794,069	+				-1.0
3,794,069	+				+2.8
3,794,069	+				-0.3
3,794,070	-				-0.5
3,794,070	-				-1.2
3,794,175	-				+0.8
3,794,220	-				-0.4
3,794,235	-				-0.7
3,794,238	+				+1.2
3,794,305	+				+0.5
3,794,305	+				-0.8
3,794,305	+				+0.1
3,794,305	+				-0.4
3,794,305	+				+0.8
3,794,305	+				-1.9
3,794,305	+				-0.2
3,794,305	+				-0.4
3,794,306	-				-3.1
3,794,306	-				+0.2
3,794,306	-				+0.8
3,794,306	-				+0.0
3,794,306	-				+0.1
3,794,410	+		DZA65_RS17605	0.23	+1.3
3,794,410	+		DZA65_RS17605	0.23	+1.0
3,794,411	-		DZA65_RS17605	0.24	-0.2
3,794,411	-		DZA65_RS17605	0.24	-0.5
3,794,411	-		DZA65_RS17605	0.24	+4.1
3,794,411	-		DZA65_RS17605	0.24	-0.0
3,794,411	-		DZA65_RS17605	0.24	-1.1
3,794,411	-		DZA65_RS17605	0.24	-0.2
3,794,416	+		DZA65_RS17605	0.24	+0.1
3,794,416	+		DZA65_RS17605	0.24	-0.2
3,794,443	+		DZA65_RS17605	0.28	-0.2
3,794,477	+		DZA65_RS17605	0.32	+1.4
3,794,478	-		DZA65_RS17605	0.33	-0.6
3,794,535	+		DZA65_RS17605	0.40	-0.0
3,794,561	+		DZA65_RS17605	0.44	-0.9
3,794,627	+		DZA65_RS17605	0.53	-0.5
3,794,627	+		DZA65_RS17605	0.53	+0.2
3,794,628	-		DZA65_RS17605	0.53	-0.6
3,794,628	-		DZA65_RS17605	0.53	-0.0
3,794,809	+		DZA65_RS17605	0.77	-0.2
3,794,809	+		DZA65_RS17605	0.77	-0.2
3,794,810	-		DZA65_RS17605	0.77	-0.2
3,794,810	-		DZA65_RS17605	0.77	-0.6
3,794,810	-		DZA65_RS17605	0.77	+0.8
3,794,810	-		DZA65_RS17605	0.77	-1.2
3,794,871	+		DZA65_RS17605	0.86	+0.7
3,794,872	-		DZA65_RS17605	0.86	+0.2
3,794,877	+		DZA65_RS17605	0.86	+0.6
3,794,877	+		DZA65_RS17605	0.86	+0.6
3,794,878	-		DZA65_RS17605	0.87	+0.8
3,794,910	+				-0.2
3,794,958	+				-1.6
3,794,958	+				-1.2
3,794,958	+				-0.0
3,794,959	-				-0.8
3,794,959	-				-1.2
3,794,976	+				-0.3
3,794,977	-				-0.2
3,794,977	-				-2.5
3,795,028	+				+0.2
3,795,028	+				-0.8
3,795,028	+				+0.2
3,795,028	+				+0.2
3,795,028	+				-0.3
3,795,028	+				-0.9
3,795,029	-				-0.1
3,795,029	-				-1.7
3,795,029	-				-2.0
3,795,029	-				+0.5
3,795,031	+				+0.8
3,795,031	+				-0.7
3,795,054	-				+1.2
3,795,061	-				-0.0
3,795,146	-				+1.2
3,795,146	-				-0.7
3,795,178	+				+1.5
3,795,178	+				-0.1
3,795,178	+				-0.1
3,795,178	+				-0.8
3,795,179	-				+0.6
3,795,179	-				+0.8
3,795,208	+				-2.0
3,795,208	+				+0.1
3,795,209	-				-0.7
3,795,209	-				+1.0
3,795,381	+				+1.2
3,795,381	+				+0.7
3,795,382	-				-0.2
3,795,383	+				+0.1
3,795,383	+				-0.9
3,795,384	-				+0.8
3,795,385	+				+0.8
3,795,386	-				+0.4
3,795,400	-				+0.4
3,795,401	+				-1.2
3,795,402	-				-1.2
3,795,421	+				+0.1
3,795,422	-				-0.0
3,795,436	-				+0.8
3,795,529	+		DZA65_RS17610	0.16	-0.2
3,795,541	-		DZA65_RS17610	0.18	-1.8
3,795,555	+		DZA65_RS17610	0.21	+0.6
3,795,555	+		DZA65_RS17610	0.21	+0.5
3,795,556	-		DZA65_RS17610	0.21	+0.1
3,795,556	-		DZA65_RS17610	0.21	-0.2
3,795,556	-		DZA65_RS17610	0.21	+0.8
3,795,624	+		DZA65_RS17610	0.34	+0.6
3,795,625	-		DZA65_RS17610	0.34	-2.6
3,795,625	-				+1.1
3,795,625	-		DZA65_RS17610	0.34	+0.5
3,795,625	-		DZA65_RS17610	0.34	-0.5
3,795,625	-		DZA65_RS17610	0.34	+1.0
3,795,625	-		DZA65_RS17610	0.34	+1.6
3,795,628	+		DZA65_RS17610	0.35	+0.2
3,795,628	+		DZA65_RS17610	0.35	-0.2
3,795,628	+		DZA65_RS17610	0.35	-1.8
3,795,628	+		DZA65_RS17610	0.35	-0.8
3,795,629	-		DZA65_RS17610	0.35	+0.5
3,795,629	-		DZA65_RS17610	0.35	+0.0
3,795,671	-		DZA65_RS17610	0.43	-0.2
3,795,711	+		DZA65_RS17610	0.50	-0.4
3,795,752	-		DZA65_RS17610	0.58	-0.2
3,795,752	-		DZA65_RS17610	0.58	-1.2
3,795,769	+		DZA65_RS17610	0.62	+0.2
3,795,769	+		DZA65_RS17610	0.62	-2.8
3,795,774	+		DZA65_RS17610	0.62	-0.2
3,795,774	+		DZA65_RS17610	0.62	-0.5
3,795,774	+		DZA65_RS17610	0.62	-0.5
3,795,774	+		DZA65_RS17610	0.62	-0.5
3,795,775	-		DZA65_RS17610	0.63	-1.5
3,795,775	-		DZA65_RS17610	0.63	-0.2
3,795,778	+		DZA65_RS17610	0.63	+0.3
3,795,778	+		DZA65_RS17610	0.63	-0.4
3,795,778	+		DZA65_RS17610	0.63	-1.6
3,795,778	+		DZA65_RS17610	0.63	-0.5
3,795,779	-		DZA65_RS17610	0.63	+0.0
3,795,802	+		DZA65_RS17610	0.68	-1.9
3,795,804	+		DZA65_RS17610	0.68	+0.5
3,795,804	+		DZA65_RS17610	0.68	-0.0
3,795,804	+		DZA65_RS17610	0.68	-0.6
3,795,804	+		DZA65_RS17610	0.68	+0.6
3,795,805	-		DZA65_RS17610	0.68	-0.2
3,795,805	-		DZA65_RS17610	0.68	+0.1
3,795,805	-		DZA65_RS17610	0.68	-0.5
3,795,841	+		DZA65_RS17610	0.75	+0.8
3,795,842	-		DZA65_RS17610	0.75	-2.3
3,795,842	-		DZA65_RS17610	0.75	-0.1
3,795,844	+		DZA65_RS17610	0.76	+0.8
3,795,845	-		DZA65_RS17610	0.76	+0.8
3,795,938	-				+0.5
3,795,938	-				-0.5
3,795,940	-				+1.0
3,795,955	+				-0.2
3,795,956	-				-0.8