Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17570

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,786,316	+		DZA65_RS17565	0.35	-1.4
3,786,317	-		DZA65_RS17565	0.35	+1.3
3,786,353	+		DZA65_RS17565	0.38	-3.1
3,786,353	+		DZA65_RS17565	0.38	+0.0
3,786,353	+		DZA65_RS17565	0.38	+0.2
3,786,353	+		DZA65_RS17565	0.38	+1.3
3,786,353	+		DZA65_RS17565	0.38	-1.8
3,786,353	+		DZA65_RS17565	0.38	-0.1
3,786,353	+		DZA65_RS17565	0.38	-0.3
3,786,353	+		DZA65_RS17565	0.38	+1.0
3,786,353	+		DZA65_RS17565	0.38	+3.9
3,786,353	+		DZA65_RS17565	0.38	-1.8
3,786,353	+				+0.2
3,786,354	-		DZA65_RS17565	0.38	+0.2
3,786,354	-		DZA65_RS17565	0.38	-1.2
3,786,354	-		DZA65_RS17565	0.38	-1.5
3,786,354	-		DZA65_RS17565	0.38	-0.4
3,786,354	-		DZA65_RS17565	0.38	-0.7
3,786,354	-		DZA65_RS17565	0.38	+0.6
3,786,357	+		DZA65_RS17565	0.38	+1.3
3,786,357	+		DZA65_RS17565	0.38	-0.8
3,786,357	+		DZA65_RS17565	0.38	+0.1
3,786,357	+		DZA65_RS17565	0.38	+1.0
3,786,379	+		DZA65_RS17565	0.40	+1.5
3,786,394	+		DZA65_RS17565	0.41	+0.1
3,786,426	+		DZA65_RS17565	0.43	+1.0
3,786,426	+		DZA65_RS17565	0.43	+0.6
3,786,426	+		DZA65_RS17565	0.43	+0.1
3,786,426	+		DZA65_RS17565	0.43	-0.1
3,786,426	+		DZA65_RS17565	0.43	+0.2
3,786,426	+		DZA65_RS17565	0.43	+1.4
3,786,426	+		DZA65_RS17565	0.43	-0.8
3,786,426	+		DZA65_RS17565	0.43	-0.3
3,786,426	+		DZA65_RS17565	0.43	+0.2
3,786,426	+		DZA65_RS17565	0.43	-0.2
3,786,426	+		DZA65_RS17565	0.43	+1.0
3,786,426	+		DZA65_RS17565	0.43	-1.3
3,786,426	+		DZA65_RS17565	0.43	-0.2
3,786,426	+		DZA65_RS17565	0.43	-0.6
3,786,426	+		DZA65_RS17565	0.43	-1.1
3,786,426	+		DZA65_RS17565	0.43	-1.8
3,786,427	-		DZA65_RS17565	0.43	+1.0
3,786,427	-		DZA65_RS17565	0.43	+1.9
3,786,427	-		DZA65_RS17565	0.43	-0.6
3,786,427	-		DZA65_RS17565	0.43	-2.0
3,786,427	-		DZA65_RS17565	0.43	+1.8
3,786,427	-		DZA65_RS17565	0.43	-0.6
3,786,427	-		DZA65_RS17565	0.43	+0.2
3,786,427	-		DZA65_RS17565	0.43	-0.6
3,786,427	-		DZA65_RS17565	0.43	-1.0
3,786,841	+		DZA65_RS17565	0.76	+0.1
3,786,841	+		DZA65_RS17565	0.76	+0.2
3,786,989	+		DZA65_RS17565	0.87	+0.5
3,786,989	+		DZA65_RS17565	0.87	-0.0
3,786,989	+		DZA65_RS17565	0.87	-1.6
3,786,990	-		DZA65_RS17565	0.87	+1.5
3,787,066	+				+1.3
3,787,066	+				-1.4
3,787,066	+				+0.1
3,787,104	+				-0.1
3,787,104	+				+0.3
3,787,104	+				+1.2
3,787,104	+				-0.4
3,787,105	-				-0.8
3,787,105	-				+2.1
3,787,150	+				-0.8
3,787,169	-				-1.9
3,787,172	+				-1.1
3,787,172	+				+0.6
3,787,172	+				-3.6
3,787,173	-				+1.2
3,787,173	-				-0.4
3,787,173	-				-0.4
3,787,173	-				-1.2
3,787,175	+				+0.2
3,787,189	+				+0.8
3,787,190	-				+0.0
3,787,203	+				+0.8
3,787,203	+				+0.3
3,787,203	+				-1.8
3,787,204	-				+0.4
3,787,249	+				+1.0
3,787,250	-				-0.5
3,787,250	-				+0.2
3,787,265	+				-0.3
3,787,266	-				-1.0
3,787,303	+				+0.6
3,787,322	+				+0.5
3,787,359	-				+0.1
3,787,409	+		DZA65_RS17570	0.11	-0.9
3,787,409	+		DZA65_RS17570	0.11	-0.2
3,787,409	+		DZA65_RS17570	0.11	-1.2
3,787,409	+		DZA65_RS17570	0.11	-0.2
3,787,410	-		DZA65_RS17570	0.11	-0.4
3,787,410	-		DZA65_RS17570	0.11	-1.1
3,787,410	-		DZA65_RS17570	0.11	+1.1
3,787,435	+		DZA65_RS17570	0.13	+1.0
3,787,446	+		DZA65_RS17570	0.14	+0.3
3,787,447	-		DZA65_RS17570	0.14	-1.8
3,787,467	+		DZA65_RS17570	0.15	+0.6
3,787,467	+		DZA65_RS17570	0.15	+0.4
3,787,467	+		DZA65_RS17570	0.15	-0.4
3,787,468	-		DZA65_RS17570	0.15	+0.0
3,787,563	-		DZA65_RS17570	0.21	-1.8
3,787,563	-		DZA65_RS17570	0.21	-0.1
3,787,563	-		DZA65_RS17570	0.21	-0.9
3,787,563	-		DZA65_RS17570	0.21	+0.5
3,787,674	-		DZA65_RS17570	0.28	+0.5
3,787,729	+		DZA65_RS17570	0.31	-0.8
3,787,743	+		DZA65_RS17570	0.32	-0.0
3,787,744	-		DZA65_RS17570	0.32	-1.9
3,787,869	+		DZA65_RS17570	0.40	-0.8
3,787,870	-		DZA65_RS17570	0.40	-0.9
3,787,870	-		DZA65_RS17570	0.40	-0.7
3,787,901	+		DZA65_RS17570	0.42	-0.4
3,787,901	+		DZA65_RS17570	0.42	-0.3
3,787,901	+		DZA65_RS17570	0.42	-0.2
3,787,902	-		DZA65_RS17570	0.42	-0.2
3,787,908	+		DZA65_RS17570	0.42	-0.6
3,787,909	-		DZA65_RS17570	0.42	+0.2
3,787,911	+		DZA65_RS17570	0.43	-0.0
3,787,911	+		DZA65_RS17570	0.43	+0.0
3,787,911	+		DZA65_RS17570	0.43	+0.8
3,787,911	+		DZA65_RS17570	0.43	+0.4
3,787,911	+		DZA65_RS17570	0.43	-0.3
3,787,911	+		DZA65_RS17570	0.43	-0.0
3,787,912	-		DZA65_RS17570	0.43	-0.8
3,787,912	-		DZA65_RS17570	0.43	-0.6
3,787,912	-		DZA65_RS17570	0.43	+0.3
3,787,912	-		DZA65_RS17570	0.43	+0.0
3,787,912	-		DZA65_RS17570	0.43	-1.3
3,787,912	-		DZA65_RS17570	0.43	-0.3
3,787,912	-		DZA65_RS17570	0.43	+0.8
3,787,915	-		DZA65_RS17570	0.43	+0.5
3,787,915	-		DZA65_RS17570	0.43	+0.5
3,787,915	-		DZA65_RS17570	0.43	-0.6
3,787,932	+		DZA65_RS17570	0.44	-0.3
3,787,959	+		DZA65_RS17570	0.46	-1.1
3,787,959	+		DZA65_RS17570	0.46	+0.1
3,787,960	-		DZA65_RS17570	0.46	-2.2
3,788,102	+		DZA65_RS17570	0.55	-0.2
3,788,102	+		DZA65_RS17570	0.55	-2.5
3,788,103	-		DZA65_RS17570	0.55	-0.0
3,788,103	-		DZA65_RS17570	0.55	+0.2
3,788,103	-		DZA65_RS17570	0.55	+1.2
3,788,103	-		DZA65_RS17570	0.55	-0.1
3,788,132	+		DZA65_RS17570	0.56	-2.6
3,788,140	+		DZA65_RS17570	0.57	+0.1
3,788,140	+		DZA65_RS17570	0.57	-1.2
3,788,141	-		DZA65_RS17570	0.57	+0.4
3,788,141	-		DZA65_RS17570	0.57	-0.5
3,788,141	-		DZA65_RS17570	0.57	-1.8
3,788,208	+		DZA65_RS17570	0.61	+0.4
3,788,228	+		DZA65_RS17570	0.62	-0.8
3,788,228	+		DZA65_RS17570	0.62	+2.4
3,788,229	-		DZA65_RS17570	0.62	-0.5
3,788,264	+		DZA65_RS17570	0.65	-2.2
3,788,264	+		DZA65_RS17570	0.65	+0.1
3,788,264	+		DZA65_RS17570	0.65	-1.6
3,788,265	-		DZA65_RS17570	0.65	+0.2
3,788,335	+		DZA65_RS17570	0.69	+0.8
3,788,335	+				+1.4
3,788,360	+		DZA65_RS17570	0.71	+0.2
3,788,360	+		DZA65_RS17570	0.71	-1.8
3,788,360	+		DZA65_RS17570	0.71	+0.0
3,788,361	-		DZA65_RS17570	0.71	+1.3
3,788,426	+		DZA65_RS17570	0.75	+0.8
3,788,427	-		DZA65_RS17570	0.75	-0.2
3,788,434	+		DZA65_RS17570	0.75	-0.5
3,788,434	+		DZA65_RS17570	0.75	+0.8
3,788,434	+		DZA65_RS17570	0.75	+0.8
3,788,435	-		DZA65_RS17570	0.75	-1.2
3,788,435	-		DZA65_RS17570	0.75	+0.6
3,788,435	-		DZA65_RS17570	0.75	-0.2
3,788,435	-		DZA65_RS17570	0.75	+0.4
3,788,435	-		DZA65_RS17570	0.75	-0.7
3,788,453	+		DZA65_RS17570	0.76	+0.4
3,788,453	+		DZA65_RS17570	0.76	-0.2
3,788,453	+		DZA65_RS17570	0.76	-0.8
3,788,453	+				+1.8
3,788,453	+		DZA65_RS17570	0.76	+1.4
3,788,453	+		DZA65_RS17570	0.76	+0.1
3,788,453	+		DZA65_RS17570	0.76	-0.9
3,788,453	+		DZA65_RS17570	0.76	+0.7
3,788,453	+		DZA65_RS17570	0.76	-0.4
3,788,453	+		DZA65_RS17570	0.76	-0.0
3,788,453	+		DZA65_RS17570	0.76	-0.5
3,788,453	+		DZA65_RS17570	0.76	-0.1
3,788,453	+		DZA65_RS17570	0.76	+1.5
3,788,454	-		DZA65_RS17570	0.77	+0.2
3,788,454	-		DZA65_RS17570	0.77	-0.2
3,788,454	-		DZA65_RS17570	0.77	-0.1
3,788,457	+		DZA65_RS17570	0.77	-0.3
3,788,457	+		DZA65_RS17570	0.77	+0.1
3,788,457	+		DZA65_RS17570	0.77	-2.0
3,788,457	+		DZA65_RS17570	0.77	-0.8
3,788,458	-		DZA65_RS17570	0.77	-1.1
3,788,458	-		DZA65_RS17570	0.77	-0.6
3,788,458	-		DZA65_RS17570	0.77	-0.4
3,788,490	+		DZA65_RS17570	0.79	-0.5
3,788,502	+		DZA65_RS17570	0.80	-0.9
3,788,502	+		DZA65_RS17570	0.80	+0.1
3,788,502	+		DZA65_RS17570	0.80	+0.1
3,788,503	-		DZA65_RS17570	0.80	-0.3
3,788,503	-		DZA65_RS17570	0.80	-0.9
3,788,507	+		DZA65_RS17570	0.80	+0.8
3,788,507	+		DZA65_RS17570	0.80	-0.4
3,788,507	+		DZA65_RS17570	0.80	+0.1
3,788,507	+		DZA65_RS17570	0.80	-0.9
3,788,508	-		DZA65_RS17570	0.80	+0.6
3,788,508	-		DZA65_RS17570	0.80	-3.1
3,788,544	+		DZA65_RS17570	0.82	-0.2
3,788,544	+		DZA65_RS17570	0.82	-0.2
3,788,544	+		DZA65_RS17570	0.82	+0.3
3,788,544	+		DZA65_RS17570	0.82	+0.7
3,788,545	-		DZA65_RS17570	0.82	-0.5
3,788,545	-		DZA65_RS17570	0.82	-0.0
3,788,652	+		DZA65_RS17570	0.89	+0.8
3,788,652	+		DZA65_RS17570	0.89	-0.2
3,788,652	+		DZA65_RS17570	0.89	+1.8
3,788,831	+				-0.9
3,788,831	+				-0.2
3,788,831	+				-1.5
3,788,831	+				+0.7
3,788,832	-				-0.5
3,788,855	+				-2.2
3,788,855	+				-0.2
3,788,855	+				-0.6
3,788,855	+				+1.8
3,788,855	+				+0.8
3,788,855	+				-0.2
3,788,855	+				+1.2
3,788,855	+				-0.8
3,788,856	-				+0.8
3,788,856	-				-0.7
3,788,856	-				-0.3
3,788,856	-				-0.3
3,788,856	-				-1.2
3,788,856	-				+1.2
3,788,856	-				-1.8
3,788,856	-				+0.4
3,788,856	-				-1.0
3,788,863	-				+0.4
3,788,885	+				+1.8
3,788,885	+				-0.8
3,788,885	+				+1.1
3,788,885	+				-0.5
3,788,885	+				-1.5
3,788,885	+				+2.0
3,788,885	+				-0.8
3,788,885	+				-0.0
3,788,885	+				+0.8
3,788,885	+				+0.5
3,788,886	-				-0.4
3,788,886	-				+0.8
3,788,886	-				-1.3
3,788,886	-				+0.0
3,788,886	-				-0.5
3,788,886	-				+3.3
3,788,907	+				+0.4
3,788,908	-				-0.8
3,788,914	-				-0.3
3,789,038	+		DZA65_RS17575	0.21	+0.2
3,789,039	-		DZA65_RS17575	0.21	-1.1
3,789,254	+		DZA65_RS17575	0.43	-0.8
3,789,254	+		DZA65_RS17575	0.43	-0.4
3,789,254	+		DZA65_RS17575	0.43	+0.7
3,789,254	+		DZA65_RS17575	0.43	-0.2
3,789,255	-		DZA65_RS17575	0.43	-0.1
3,789,255	-		DZA65_RS17575	0.43	+0.4
3,789,255	-		DZA65_RS17575	0.43	+0.6
3,789,255	-		DZA65_RS17575	0.43	-2.3
3,789,262	+		DZA65_RS17575	0.44	-1.5
3,789,263	-		DZA65_RS17575	0.44	+0.6
3,789,263	-		DZA65_RS17575	0.44	+0.3
3,789,327	+		DZA65_RS17575	0.51	-1.1
3,789,439	+		DZA65_RS17575	0.63	-0.6
3,789,439	+		DZA65_RS17575	0.63	-0.1
3,789,439	+		DZA65_RS17575	0.63	+1.2
3,789,439	+		DZA65_RS17575	0.63	+0.0
3,789,439	+		DZA65_RS17575	0.63	+0.2
3,789,440	-		DZA65_RS17575	0.63	+1.6
3,789,440	-		DZA65_RS17575	0.63	+0.1
3,789,440	-		DZA65_RS17575	0.63	-0.5
3,789,440	-		DZA65_RS17575	0.63	+0.6
3,789,440	-		DZA65_RS17575	0.63	+1.0
3,789,440	-		DZA65_RS17575	0.63	+0.0
3,789,479	+		DZA65_RS17575	0.67	+1.6
3,789,479	+		DZA65_RS17575	0.67	-0.9
3,789,479	+		DZA65_RS17575	0.67	+0.2
3,789,479	+		DZA65_RS17575	0.67	+0.6
3,789,479	+		DZA65_RS17575	0.67	+0.8
3,789,479	+		DZA65_RS17575	0.67	+2.1
3,789,480	-		DZA65_RS17575	0.67	-0.5
3,789,480	-		DZA65_RS17575	0.67	-0.3
3,789,480	-		DZA65_RS17575	0.67	-1.6
3,789,481	+		DZA65_RS17575	0.67	-0.2
3,789,482	-		DZA65_RS17575	0.67	+0.8
3,789,521	-		DZA65_RS17575	0.72	+0.3
3,789,568	+		DZA65_RS17575	0.76	+0.2
3,789,569	-		DZA65_RS17575	0.77	-0.8
3,789,590	+		DZA65_RS17575	0.79	-1.0
3,789,591	-		DZA65_RS17575	0.79	+0.2
3,789,655	+		DZA65_RS17575	0.86	+0.2
3,789,656	-		DZA65_RS17575	0.86	+1.1
3,789,656	-		DZA65_RS17575	0.86	+0.6
3,789,656	-		DZA65_RS17575	0.86	-0.0
3,789,689	-		DZA65_RS17575	0.89	-2.0
3,789,689	-		DZA65_RS17575	0.89	+0.8
3,789,689	-		DZA65_RS17575	0.89	-1.5
3,789,722	+				+0.6
3,789,722	+				+2.4
3,789,722	+				-1.4
3,789,722	+				-2.3
3,789,722	+				+1.3
3,789,723	-				-0.9
3,789,723	-				-0.6
3,789,723	-				+0.1
3,789,723	-				-1.0
3,789,723	-				+0.5
3,789,755	+				+0.6
3,789,755	+				+0.4
3,789,755	+				-0.8
3,789,755	+				+1.4
3,789,756	-				-0.5
3,789,756	-				-0.5
3,789,756	-				-1.0
3,789,765	+				-0.2
3,789,765	+				+0.1
3,789,765	+				+0.6
3,789,766	-				+1.0
3,789,766	-				+0.6
3,789,766	-				-1.5
3,789,782	+				-0.0
3,789,783	-				+0.5
3,789,783	-				-1.8
3,789,793	+				-0.4
3,789,793	+				-0.8
3,789,794	-				-0.7