Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17220

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,715,103	-				-1.0
3,715,152	+				-1.1
3,715,152	+				-0.4
3,715,152	+				-0.8
3,715,152	+				-0.1
3,715,152	+				+0.3
3,715,152	+				-0.9
3,715,152	+				-0.5
3,715,153	-				+2.0
3,715,153	-				-0.5
3,715,153	-				+0.8
3,715,153	-				+0.1
3,715,153	-				-2.5
3,715,153	-				+1.1
3,715,153	-				+0.3
3,715,153	-				+0.2
3,715,153	-				+0.3
3,715,156	+				+1.9
3,715,156	+				+0.2
3,715,156	+				+1.1
3,715,156	+				+2.1
3,715,157	-				+1.0
3,715,157	-				-0.9
3,715,161	+				-0.1
3,715,162	-				-1.3
3,715,162	-				+1.5
3,715,162	-				-2.4
3,715,162	-				+1.8
3,715,186	-				+0.1
3,715,203	-				-0.5
3,715,281	+				-0.2
3,715,281	+				-1.1
3,715,281	+				+1.1
3,715,281	+				+0.2
3,715,281	+				-0.4
3,715,281	+				+1.4
3,715,281	+				+1.3
3,715,281	+				-0.8
3,715,282	-				+0.3
3,715,282	-				-2.2
3,715,282	-				+2.0
3,715,343	+		DZA65_RS17215	0.16	+1.3
3,715,392	+		DZA65_RS17215	0.22	-1.2
3,715,392	+		DZA65_RS17215	0.22	-0.9
3,715,392	+		DZA65_RS17215	0.22	+0.5
3,715,393	-		DZA65_RS17215	0.22	+0.5
3,715,393	-		DZA65_RS17215	0.22	-0.7
3,715,507	+		DZA65_RS17215	0.35	-0.8
3,715,507	+		DZA65_RS17215	0.35	+1.5
3,715,507	+		DZA65_RS17215	0.35	+0.2
3,715,507	+		DZA65_RS17215	0.35	-1.1
3,715,507	+		DZA65_RS17215	0.35	-0.2
3,715,507	+		DZA65_RS17215	0.35	+0.8
3,715,507	+		DZA65_RS17215	0.35	-0.8
3,715,507	+		DZA65_RS17215	0.35	+0.2
3,715,507	+		DZA65_RS17215	0.35	-0.8
3,715,507	+		DZA65_RS17215	0.35	-1.4
3,715,507	+		DZA65_RS17215	0.35	-0.8
3,715,507	+		DZA65_RS17215	0.35	-0.4
3,715,508	-		DZA65_RS17215	0.35	+0.7
3,715,508	-		DZA65_RS17215	0.35	+0.2
3,715,508	-				-0.8
3,715,508	-		DZA65_RS17215	0.35	+1.2
3,715,508	-		DZA65_RS17215	0.35	+0.5
3,715,508	-		DZA65_RS17215	0.35	-0.5
3,715,508	-		DZA65_RS17215	0.35	+0.5
3,715,508	-		DZA65_RS17215	0.35	-2.0
3,715,508	-		DZA65_RS17215	0.35	-2.7
3,715,516	+		DZA65_RS17215	0.36	+0.3
3,715,516	+		DZA65_RS17215	0.36	-1.1
3,715,517	-		DZA65_RS17215	0.36	+0.2
3,715,564	-		DZA65_RS17215	0.41	-1.5
3,715,564	-		DZA65_RS17215	0.41	+0.5
3,715,564	-		DZA65_RS17215	0.41	+1.6
3,715,564	-		DZA65_RS17215	0.41	-2.0
3,715,571	+		DZA65_RS17215	0.42	-1.2
3,715,715	+		DZA65_RS17215	0.59	-0.9
3,715,715	+		DZA65_RS17215	0.59	-0.0
3,715,716	-		DZA65_RS17215	0.59	+0.5
3,715,716	-		DZA65_RS17215	0.59	-0.5
3,715,840	-		DZA65_RS17215	0.73	+1.3
3,715,861	-		DZA65_RS17215	0.76	+1.4
3,715,881	+		DZA65_RS17215	0.78	-0.8
3,715,881	+		DZA65_RS17215	0.78	-0.2
3,715,881	+		DZA65_RS17215	0.78	+0.4
3,715,881	+		DZA65_RS17215	0.78	+0.8
3,715,882	-		DZA65_RS17215	0.78	-0.4
3,715,882	-		DZA65_RS17215	0.78	-0.9
3,715,882	-		DZA65_RS17215	0.78	-0.3
3,715,882	-		DZA65_RS17215	0.78	-1.5
3,715,882	-		DZA65_RS17215	0.78	+0.1
3,715,882	-		DZA65_RS17215	0.78	-1.2
3,715,885	-		DZA65_RS17215	0.79	-0.4
3,715,950	-		DZA65_RS17215	0.86	-0.4
3,715,995	+				-0.8
3,715,995	+				+0.2
3,715,995	+				-0.6
3,715,995	+				+0.4
3,715,996	-				-0.5
3,715,996	-				-0.3
3,715,996	-				-2.0
3,716,037	+				-1.5
3,716,038	-				+0.4
3,716,038	-				-0.6
3,716,038	-				+0.2
3,716,041	+				+0.3
3,716,041	+				+0.5
3,716,041	+				+1.4
3,716,084	-				-0.2
3,716,096	+				+2.3
3,716,096	+				+0.5
3,716,097	-				+0.8
3,716,156	+				+2.6
3,716,157	-				+1.1
3,716,157	-				+0.1
3,716,160	+				-1.9
3,716,160	+				+1.0
3,716,160	+				-0.1
3,716,160	+				-0.9
3,716,160	+				+2.1
3,716,160	+				-0.0
3,716,160	+				+0.3
3,716,160	+				-0.8
3,716,160	+				+1.0
3,716,160	+				+0.4
3,716,161	-				-0.1
3,716,161	-				-0.1
3,716,161	-				-0.1
3,716,161	-				-0.4
3,716,161	-				-0.5
3,716,161	-				-0.1
3,716,161	-				-0.4
3,716,165	+				+0.8
3,716,172	+				+0.2
3,716,172	+				+0.1
3,716,202	+		DZA65_RS17220	0.13	-0.0
3,716,202	+		DZA65_RS17220	0.13	-0.0
3,716,202	+		DZA65_RS17220	0.13	+0.5
3,716,202	+		DZA65_RS17220	0.13	+1.7
3,716,202	+		DZA65_RS17220	0.13	-0.1
3,716,202	+		DZA65_RS17220	0.13	+0.2
3,716,202	+		DZA65_RS17220	0.13	-0.6
3,716,203	-		DZA65_RS17220	0.13	+0.4
3,716,203	-		DZA65_RS17220	0.13	-1.5
3,716,203	-		DZA65_RS17220	0.13	+0.1
3,716,203	-		DZA65_RS17220	0.13	+2.0
3,716,203	-		DZA65_RS17220	0.13	-0.5
3,716,203	-		DZA65_RS17220	0.13	+0.4
3,716,203	-		DZA65_RS17220	0.13	-0.9
3,716,205	-		DZA65_RS17220	0.13	+0.0
3,716,211	+		DZA65_RS17220	0.14	+0.2
3,716,211	+		DZA65_RS17220	0.14	-1.0
3,716,211	+		DZA65_RS17220	0.14	-0.5
3,716,211	+		DZA65_RS17220	0.14	+0.8
3,716,211	+		DZA65_RS17220	0.14	-0.2
3,716,211	+		DZA65_RS17220	0.14	+0.2
3,716,212	-		DZA65_RS17220	0.14	+1.5
3,716,212	-		DZA65_RS17220	0.14	+2.1
3,716,212	-		DZA65_RS17220	0.14	-0.2
3,716,226	+		DZA65_RS17220	0.16	+0.4
3,716,226	+		DZA65_RS17220	0.16	+1.2
3,716,226	+		DZA65_RS17220	0.16	+0.4
3,716,226	+		DZA65_RS17220	0.16	-0.1
3,716,226	+		DZA65_RS17220	0.16	+0.2
3,716,226	+		DZA65_RS17220	0.16	+1.1
3,716,226	+		DZA65_RS17220	0.16	+0.3
3,716,226	+		DZA65_RS17220	0.16	+0.3
3,716,226	+				+0.4
3,716,226	+		DZA65_RS17220	0.16	+0.1
3,716,227	-		DZA65_RS17220	0.16	-0.2
3,716,227	-		DZA65_RS17220	0.16	-0.4
3,716,227	-		DZA65_RS17220	0.16	-0.5
3,716,227	-		DZA65_RS17220	0.16	-1.0
3,716,227	-		DZA65_RS17220	0.16	+0.8
3,716,227	-		DZA65_RS17220	0.16	-0.8
3,716,227	-		DZA65_RS17220	0.16	-0.4
3,716,227	-		DZA65_RS17220	0.16	+0.2
3,716,227	-		DZA65_RS17220	0.16	-0.3
3,716,258	+		DZA65_RS17220	0.20	-1.2
3,716,294	+		DZA65_RS17220	0.24	-1.4
3,716,294	+		DZA65_RS17220	0.24	+0.4
3,716,378	+		DZA65_RS17220	0.35	-0.8
3,716,379	-		DZA65_RS17220	0.35	-0.6
3,716,438	+		DZA65_RS17220	0.43	+0.3
3,716,438	+		DZA65_RS17220	0.43	+0.8
3,716,438	+		DZA65_RS17220	0.43	+0.8
3,716,438	+		DZA65_RS17220	0.43	+0.8
3,716,439	-		DZA65_RS17220	0.43	-0.2
3,716,439	-		DZA65_RS17220	0.43	+1.1
3,716,439	-		DZA65_RS17220	0.43	-0.5
3,716,439	-		DZA65_RS17220	0.43	+1.8
3,716,439	-		DZA65_RS17220	0.43	-0.4
3,716,486	+		DZA65_RS17220	0.49	+0.8
3,716,486	+		DZA65_RS17220	0.49	+0.5
3,716,514	-		DZA65_RS17220	0.52	-3.1
3,716,514	-		DZA65_RS17220	0.52	+0.5
3,716,550	+		DZA65_RS17220	0.57	+0.2
3,716,698	-		DZA65_RS17220	0.75	-0.5
3,716,713	+		DZA65_RS17220	0.77	+0.4
3,716,714	-		DZA65_RS17220	0.77	+0.1
3,716,714	-		DZA65_RS17220	0.77	+0.2
3,716,778	+		DZA65_RS17220	0.85	+0.3
3,716,778	+		DZA65_RS17220	0.85	+0.9
3,716,779	-		DZA65_RS17220	0.85	+0.8
3,716,779	-		DZA65_RS17220	0.85	-1.3
3,716,779	-		DZA65_RS17220	0.85	+1.5
3,716,779	-		DZA65_RS17220	0.85	-0.8
3,716,828	+				+0.3
3,716,828	+				-2.9
3,716,828	+				-1.0
3,716,828	+				-2.4
3,716,829	-				-0.2
3,716,829	-				+1.1
3,716,829	-				-0.1
3,716,829	-				+0.6
3,716,829	-				-0.5
3,716,829	-				+0.6
3,716,829	-				-1.9
3,716,832	-				+1.1
3,716,865	+				+0.5
3,716,865	+				+0.5
3,716,866	-				+0.1
3,716,866	-				+0.8
3,716,866	-				+0.1
3,716,869	-				-0.8
3,716,869	-				-1.1
3,716,932	-				-0.1
3,716,932	-				+0.1
3,716,975	+				-1.2
3,716,975	+				+1.8
3,717,018	-				+0.1
3,717,037	+				-0.7
3,717,037	+				-0.1
3,717,038	-				+0.7
3,717,038	-				+0.3
3,717,038	-				-0.6
3,717,038	-				+0.2
3,717,038	-				+1.8
3,717,038	-				+0.1
3,717,041	+				-1.2
3,717,041	+				-2.5
3,717,179	+		DZA65_RS17225	0.29	-0.9
3,717,179	+		DZA65_RS17225	0.29	+0.2
3,717,179	+		DZA65_RS17225	0.29	-0.2
3,717,179	+		DZA65_RS17225	0.29	-0.2
3,717,179	+		DZA65_RS17225	0.29	-2.2
3,717,179	+		DZA65_RS17225	0.29	+1.4
3,717,179	+		DZA65_RS17225	0.29	+0.1
3,717,179	+		DZA65_RS17225	0.29	+0.3
3,717,180	-		DZA65_RS17225	0.30	-0.5
3,717,180	-		DZA65_RS17225	0.30	-2.2
3,717,180	-		DZA65_RS17225	0.30	+0.8
3,717,180	-		DZA65_RS17225	0.30	-1.2
3,717,180	-		DZA65_RS17225	0.30	+1.0
3,717,180	-		DZA65_RS17225	0.30	+0.7
3,717,180	-		DZA65_RS17225	0.30	-1.0
3,717,180	-		DZA65_RS17225	0.30	+2.6
3,717,180	-		DZA65_RS17225	0.30	-0.2
3,717,180	-		DZA65_RS17225	0.30	-0.5
3,717,180	-		DZA65_RS17225	0.30	-1.5
3,717,205	+		DZA65_RS17225	0.41	+1.7
3,717,237	+		DZA65_RS17225	0.54	-1.1
3,717,237	+		DZA65_RS17225	0.54	-0.3
3,717,237	+		DZA65_RS17225	0.54	-1.8
3,717,237	+		DZA65_RS17225	0.54	+2.1
3,717,238	-		DZA65_RS17225	0.55	-1.8
3,717,238	-		DZA65_RS17225	0.55	-2.0
3,717,238	-		DZA65_RS17225	0.55	-0.2
3,717,367	+				-0.0
3,717,367	+				+0.3
3,717,367	+				-1.5
3,717,367	+				-1.4
3,717,367	+				-0.7
3,717,367	+				+0.6
3,717,367	+				-0.3
3,717,368	-				-0.1
3,717,368	-				-0.3
3,717,368	-				-0.2
3,717,478	+		DZA65_RS17230	0.31	-0.9
3,717,478	+		DZA65_RS17230	0.31	-0.4
3,717,479	-		DZA65_RS17230	0.31	+1.4
3,717,499	+		DZA65_RS17230	0.36	-2.4
3,717,707	+		DZA65_RS17230	0.87	+0.1
3,717,707	+		DZA65_RS17230	0.87	+1.3
3,717,707	+		DZA65_RS17230	0.87	-0.2
3,717,707	+		DZA65_RS17230	0.87	-0.8
3,717,707	+				-1.2
3,717,707	+		DZA65_RS17230	0.87	-0.5
3,717,707	+		DZA65_RS17230	0.87	+0.8
3,717,707	+		DZA65_RS17230	0.87	-0.2
3,717,707	+		DZA65_RS17230	0.87	-0.5
3,717,707	+		DZA65_RS17230	0.87	+1.8
3,717,707	+		DZA65_RS17230	0.87	-0.1
3,717,707	+		DZA65_RS17230	0.87	+0.0
3,717,708	-		DZA65_RS17230	0.87	+2.2
3,717,708	-		DZA65_RS17230	0.87	+0.0
3,717,708	-		DZA65_RS17230	0.87	+0.7
3,717,708	-		DZA65_RS17230	0.87	-0.5
3,717,708	-		DZA65_RS17230	0.87	-1.9
3,717,708	-		DZA65_RS17230	0.87	+3.0
3,717,708	-		DZA65_RS17230	0.87	+0.3
3,717,708	-		DZA65_RS17230	0.87	+1.8
3,717,708	-		DZA65_RS17230	0.87	-0.7
3,717,716	+		DZA65_RS17230	0.89	+0.3
3,717,716	+		DZA65_RS17230	0.89	-0.3
3,717,716	+		DZA65_RS17230	0.89	+0.3
3,717,716	+		DZA65_RS17230	0.89	+2.3
3,717,717	-		DZA65_RS17230	0.89	-1.9
3,717,717	-		DZA65_RS17230	0.89	-1.9
3,717,717	-		DZA65_RS17230	0.89	+0.2
3,717,717	-		DZA65_RS17230	0.89	+0.8
3,717,717	-		DZA65_RS17230	0.89	+0.8
3,717,717	-		DZA65_RS17230	0.89	+0.8
3,717,787	-				-0.7
3,717,787	-				+1.4
3,717,816	+				+0.7
3,717,817	-				+0.3
3,717,817	-				+1.1
3,717,817	-				-0.4
3,717,817	-				-0.2
3,717,870	+				-0.2
3,717,871	-				-1.2
3,717,871	-				+0.1
3,717,871	-				-0.8