Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17070

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,683,711	+				-0.8
3,683,712	-				-1.8
3,683,766	+		DZA65_RS17065	0.16	+0.3
3,683,766	+		DZA65_RS17065	0.16	+1.4
3,683,766	+				-0.5
3,683,766	+		DZA65_RS17065	0.16	+0.5
3,683,766	+		DZA65_RS17065	0.16	-1.2
3,683,767	-		DZA65_RS17065	0.16	-1.6
3,683,767	-		DZA65_RS17065	0.16	-0.2
3,683,767	-		DZA65_RS17065	0.16	+1.6
3,683,767	-		DZA65_RS17065	0.16	+1.4
3,683,767	-		DZA65_RS17065	0.16	+1.2
3,683,767	-		DZA65_RS17065	0.16	+0.2
3,683,776	-		DZA65_RS17065	0.17	+0.1
3,683,776	-		DZA65_RS17065	0.17	-0.2
3,683,803	+		DZA65_RS17065	0.20	-0.2
3,683,804	-		DZA65_RS17065	0.20	+1.2
3,683,873	-		DZA65_RS17065	0.28	+0.4
3,683,890	-		DZA65_RS17065	0.30	+1.8
3,683,958	-		DZA65_RS17065	0.37	-0.4
3,684,024	+		DZA65_RS17065	0.45	+0.2
3,684,025	-		DZA65_RS17065	0.45	+0.1
3,684,025	-		DZA65_RS17065	0.45	+0.8
3,684,025	-		DZA65_RS17065	0.45	+0.2
3,684,025	-		DZA65_RS17065	0.45	-1.0
3,684,025	-		DZA65_RS17065	0.45	+0.1
3,684,041	+		DZA65_RS17065	0.47	-2.0
3,684,041	+		DZA65_RS17065	0.47	+0.3
3,684,041	+		DZA65_RS17065	0.47	-0.8
3,684,041	+		DZA65_RS17065	0.47	+0.8
3,684,041	+		DZA65_RS17065	0.47	+0.4
3,684,042	-		DZA65_RS17065	0.47	+0.6
3,684,042	-		DZA65_RS17065	0.47	-2.2
3,684,042	-		DZA65_RS17065	0.47	-0.6
3,684,042	-		DZA65_RS17065	0.47	-0.8
3,684,072	+		DZA65_RS17065	0.50	-0.5
3,684,072	+		DZA65_RS17065	0.50	-0.4
3,684,072	+		DZA65_RS17065	0.50	-0.4
3,684,073	-		DZA65_RS17065	0.50	+0.0
3,684,073	-		DZA65_RS17065	0.50	-0.1
3,684,109	-		DZA65_RS17065	0.54	-0.8
3,684,110	+		DZA65_RS17065	0.55	+2.4
3,684,110	+		DZA65_RS17065	0.55	+4.5
3,684,110	+		DZA65_RS17065	0.55	+1.6
3,684,110	+		DZA65_RS17065	0.55	-1.0
3,684,110	+		DZA65_RS17065	0.55	+1.2
3,684,110	+		DZA65_RS17065	0.55	+0.4
3,684,110	+		DZA65_RS17065	0.55	-1.5
3,684,110	+		DZA65_RS17065	0.55	+0.1
3,684,110	+		DZA65_RS17065	0.55	+1.2
3,684,110	+		DZA65_RS17065	0.55	-0.2
3,684,110	+		DZA65_RS17065	0.55	+0.5
3,684,111	-		DZA65_RS17065	0.55	-1.7
3,684,111	-		DZA65_RS17065	0.55	-1.2
3,684,111	-		DZA65_RS17065	0.55	-1.1
3,684,111	-		DZA65_RS17065	0.55	-1.2
3,684,141	+		DZA65_RS17065	0.58	-0.3
3,684,141	+		DZA65_RS17065	0.58	+0.2
3,684,141	+		DZA65_RS17065	0.58	-0.5
3,684,141	+		DZA65_RS17065	0.58	+1.2
3,684,141	+		DZA65_RS17065	0.58	-0.7
3,684,141	+		DZA65_RS17065	0.58	-1.8
3,684,141	+		DZA65_RS17065	0.58	-0.8
3,684,141	+		DZA65_RS17065	0.58	+2.4
3,684,141	+		DZA65_RS17065	0.58	-0.5
3,684,141	+		DZA65_RS17065	0.58	+0.8
3,684,141	+				-0.5
3,684,141	+		DZA65_RS17065	0.58	+1.5
3,684,141	+		DZA65_RS17065	0.58	-0.1
3,684,141	+		DZA65_RS17065	0.58	-0.2
3,684,141	+		DZA65_RS17065	0.58	-0.2
3,684,141	+				+1.6
3,684,141	+		DZA65_RS17065	0.58	+0.8
3,684,141	+		DZA65_RS17065	0.58	-0.7
3,684,141	+		DZA65_RS17065	0.58	+0.4
3,684,141	+		DZA65_RS17065	0.58	+0.4
3,684,141	+		DZA65_RS17065	0.58	-0.4
3,684,141	+				+1.2
3,684,141	+		DZA65_RS17065	0.58	-0.5
3,684,141	+		DZA65_RS17065	0.58	+0.8
3,684,141	+		DZA65_RS17065	0.58	-0.5
3,684,142	-		DZA65_RS17065	0.58	+0.8
3,684,142	-		DZA65_RS17065	0.58	-0.9
3,684,142	-		DZA65_RS17065	0.58	-0.2
3,684,142	-		DZA65_RS17065	0.58	-2.2
3,684,142	-		DZA65_RS17065	0.58	+1.5
3,684,142	-		DZA65_RS17065	0.58	+0.1
3,684,142	-		DZA65_RS17065	0.58	-0.2
3,684,142	-		DZA65_RS17065	0.58	+0.8
3,684,142	-		DZA65_RS17065	0.58	+0.8
3,684,142	-		DZA65_RS17065	0.58	+0.2
3,684,142	-		DZA65_RS17065	0.58	-0.4
3,684,142	-		DZA65_RS17065	0.58	-0.4
3,684,142	-		DZA65_RS17065	0.58	+1.8
3,684,142	-		DZA65_RS17065	0.58	-0.8
3,684,142	-		DZA65_RS17065	0.58	+0.3
3,684,142	-		DZA65_RS17065	0.58	-1.5
3,684,142	-		DZA65_RS17065	0.58	+0.7
3,684,142	-		DZA65_RS17065	0.58	-1.6
3,684,142	-		DZA65_RS17065	0.58	-0.2
3,684,263	-		DZA65_RS17065	0.72	-0.4
3,684,355	+		DZA65_RS17065	0.82	+0.5
3,684,444	+				-0.8
3,684,444	+				-0.8
3,684,444	+				+0.5
3,684,444	+				+1.8
3,684,445	-				+1.4
3,684,445	-				-1.5
3,684,445	-				-0.6
3,684,445	-				-2.5
3,684,445	-				-0.8
3,684,445	-				+0.5
3,684,445	-				-0.7
3,684,500	-				+1.0
3,684,522	+				+1.1
3,684,522	+				-2.5
3,684,522	+				+2.4
3,684,523	-				-0.3
3,684,524	+				+1.2
3,684,556	+				-2.5
3,684,557	-				-1.5
3,684,557	-				+1.8
3,684,621	+		DZA65_RS17070	0.12	+0.1
3,684,621	+		DZA65_RS17070	0.12	-0.2
3,684,621	+		DZA65_RS17070	0.12	-1.4
3,684,622	-		DZA65_RS17070	0.12	-0.2
3,684,622	-		DZA65_RS17070	0.12	+1.4
3,684,622	-		DZA65_RS17070	0.12	+0.8
3,684,622	-		DZA65_RS17070	0.12	-0.3
3,684,627	+		DZA65_RS17070	0.13	+0.2
3,684,627	+		DZA65_RS17070	0.13	+0.9
3,684,682	+		DZA65_RS17070	0.20	+0.9
3,684,683	-		DZA65_RS17070	0.20	+1.1
3,684,711	+		DZA65_RS17070	0.23	+0.7
3,684,711	+		DZA65_RS17070	0.23	-1.0
3,684,712	-		DZA65_RS17070	0.23	+1.4
3,684,844	+		DZA65_RS17070	0.40	+0.5
3,684,844	+		DZA65_RS17070	0.40	+0.8
3,684,934	-		DZA65_RS17070	0.51	-0.2
3,684,981	+		DZA65_RS17070	0.57	+2.0
3,684,981	+		DZA65_RS17070	0.57	-0.2
3,684,982	-		DZA65_RS17070	0.57	+1.8
3,684,982	-		DZA65_RS17070	0.57	-1.2
3,685,015	+		DZA65_RS17070	0.61	+1.4
3,685,015	+		DZA65_RS17070	0.61	+0.8
3,685,015	+		DZA65_RS17070	0.61	-1.0
3,685,015	+		DZA65_RS17070	0.61	+1.2
3,685,015	+		DZA65_RS17070	0.61	+0.0
3,685,016	-		DZA65_RS17070	0.61	+0.8
3,685,016	-		DZA65_RS17070	0.61	+0.5
3,685,033	+		DZA65_RS17070	0.63	-0.5
3,685,051	+		DZA65_RS17070	0.65	+0.2
3,685,072	+		DZA65_RS17070	0.68	+0.2
3,685,072	+		DZA65_RS17070	0.68	+1.1
3,685,072	+		DZA65_RS17070	0.68	-0.8
3,685,072	+		DZA65_RS17070	0.68	+0.1
3,685,073	-		DZA65_RS17070	0.68	+0.1
3,685,073	-		DZA65_RS17070	0.68	+0.4
3,685,073	-		DZA65_RS17070	0.68	-0.2
3,685,073	-		DZA65_RS17070	0.68	-1.2
3,685,074	+		DZA65_RS17070	0.68	-2.8
3,685,075	-		DZA65_RS17070	0.68	+0.2
3,685,086	-		DZA65_RS17070	0.69	-0.3
3,685,269	+				-0.5
3,685,269	+				+1.5
3,685,269	+				-0.3
3,685,269	+				-0.5
3,685,270	-				-0.2
3,685,270	-				+0.8
3,685,273	+				-0.0
3,685,273	+				-0.5
3,685,274	-				+0.3
3,685,274	-				+0.3
3,685,274	-				-1.2
3,685,333	+				-0.1
3,685,333	+				-0.2
3,685,334	-				+0.8
3,685,334	-				+0.2
3,685,426	-				-0.5
3,685,433	+				+1.3
3,685,434	-				+0.8
3,685,434	-				-1.5
3,685,434	-				+0.8
3,685,455	+				-1.8
3,685,455	+				+0.2
3,685,456	-				+2.0
3,685,456	-				+1.8
3,685,560	+		DZA65_RS17075	0.13	-0.5
3,685,560	+		DZA65_RS17075	0.13	-0.3
3,685,595	+		DZA65_RS17075	0.16	-0.6
3,685,596	-		DZA65_RS17075	0.16	+0.0
3,685,614	+		DZA65_RS17075	0.18	-0.8
3,685,614	+		DZA65_RS17075	0.18	+0.4
3,685,614	+		DZA65_RS17075	0.18	+0.4
3,685,614	+		DZA65_RS17075	0.18	-0.2
3,685,615	-		DZA65_RS17075	0.18	-0.3
3,685,615	-		DZA65_RS17075	0.18	+0.0
3,685,615	-		DZA65_RS17075	0.18	+0.5
3,685,615	-		DZA65_RS17075	0.18	-0.1
3,685,615	-		DZA65_RS17075	0.18	-0.6
3,685,615	-		DZA65_RS17075	0.18	+1.0
3,685,634	+		DZA65_RS17075	0.20	-0.8
3,685,635	-		DZA65_RS17075	0.20	-2.8
3,685,635	-		DZA65_RS17075	0.20	-0.8
3,685,640	+				-0.2
3,685,640	+		DZA65_RS17075	0.21	-0.0
3,685,640	+		DZA65_RS17075	0.21	-1.5
3,685,641	-				+0.8
3,685,641	-		DZA65_RS17075	0.21	-0.1
3,685,649	+		DZA65_RS17075	0.21	-1.8
3,685,650	-		DZA65_RS17075	0.22	-0.8
3,685,784	+		DZA65_RS17075	0.35	+0.8
3,685,784	+		DZA65_RS17075	0.35	+0.7
3,685,784	+		DZA65_RS17075	0.35	+0.6
3,685,785	-		DZA65_RS17075	0.35	-1.0
3,685,785	-		DZA65_RS17075	0.35	+0.4
3,685,785	-		DZA65_RS17075	0.35	-0.8
3,685,864	-		DZA65_RS17075	0.43	+1.0
3,685,886	+		DZA65_RS17075	0.45	+1.8
3,685,887	-		DZA65_RS17075	0.45	-0.4
3,685,946	+		DZA65_RS17075	0.51	-0.5
3,685,947	-		DZA65_RS17075	0.51	-2.4
3,685,947	-		DZA65_RS17075	0.51	+0.1
3,685,947	-		DZA65_RS17075	0.51	+0.9
3,685,947	-		DZA65_RS17075	0.51	-1.5
3,685,947	-		DZA65_RS17075	0.51	+0.9
3,685,947	-		DZA65_RS17075	0.51	+0.0
3,686,026	-		DZA65_RS17075	0.59	-0.8
3,686,049	+		DZA65_RS17075	0.61	+0.5
3,686,049	+		DZA65_RS17075	0.61	-0.5
3,686,049	+		DZA65_RS17075	0.61	+0.1
3,686,050	-		DZA65_RS17075	0.61	-0.7
3,686,050	-		DZA65_RS17075	0.61	+0.8
3,686,050	-		DZA65_RS17075	0.61	-1.5
3,686,050	-		DZA65_RS17075	0.61	-1.4
3,686,050	-		DZA65_RS17075	0.61	+0.2
3,686,097	-		DZA65_RS17075	0.66	-1.8
3,686,097	-		DZA65_RS17075	0.66	-0.1
3,686,097	-		DZA65_RS17075	0.66	-0.2
3,686,097	-		DZA65_RS17075	0.66	-1.5
3,686,097	-		DZA65_RS17075	0.66	+0.5
3,686,133	+		DZA65_RS17075	0.69	+0.0
3,686,134	-		DZA65_RS17075	0.69	-1.5
3,686,134	-		DZA65_RS17075	0.69	-1.8
3,686,134	-		DZA65_RS17075	0.69	+1.6
3,686,134	-		DZA65_RS17075	0.69	+0.3
3,686,172	+		DZA65_RS17075	0.73	-0.6
3,686,209	+				+0.2
3,686,305	-		DZA65_RS17075	0.86	-2.4
3,686,316	+		DZA65_RS17075	0.87	-0.6
3,686,316	+		DZA65_RS17075	0.87	+0.8
3,686,318	+		DZA65_RS17075	0.88	+0.3
3,686,318	+		DZA65_RS17075	0.88	+0.3
3,686,318	+		DZA65_RS17075	0.88	-1.5
3,686,318	+		DZA65_RS17075	0.88	-0.2
3,686,318	+		DZA65_RS17075	0.88	-1.9
3,686,318	+		DZA65_RS17075	0.88	+0.6
3,686,318	+		DZA65_RS17075	0.88	+0.9
3,686,319	-		DZA65_RS17075	0.88	+1.6
3,686,319	-		DZA65_RS17075	0.88	-1.3
3,686,319	-		DZA65_RS17075	0.88	+1.0
3,686,319	-		DZA65_RS17075	0.88	-1.1
3,686,319	-		DZA65_RS17075	0.88	-1.3
3,686,319	-		DZA65_RS17075	0.88	+0.5
3,686,319	-		DZA65_RS17075	0.88	-0.0
3,686,319	-		DZA65_RS17075	0.88	-1.7
3,686,319	-		DZA65_RS17075	0.88	+0.2
3,686,319	-		DZA65_RS17075	0.88	+0.2