Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16950

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,661,227	-		DZA65_RS16945	0.43	-2.0
3,661,270	+		DZA65_RS16945	0.46	+1.5
3,661,270	+		DZA65_RS16945	0.46	-0.3
3,661,270	+		DZA65_RS16945	0.46	+0.1
3,661,270	+		DZA65_RS16945	0.46	+0.3
3,661,271	-		DZA65_RS16945	0.46	-0.5
3,661,271	-		DZA65_RS16945	0.46	-0.4
3,661,271	-		DZA65_RS16945	0.46	-0.7
3,661,271	-		DZA65_RS16945	0.46	-1.1
3,661,271	-		DZA65_RS16945	0.46	-1.0
3,661,271	-		DZA65_RS16945	0.46	-0.2
3,661,317	+		DZA65_RS16945	0.50	-0.7
3,661,317	+		DZA65_RS16945	0.50	+0.3
3,661,318	-		DZA65_RS16945	0.50	-0.1
3,661,366	+		DZA65_RS16945	0.54	+0.2
3,661,366	+		DZA65_RS16945	0.54	+2.2
3,661,367	-		DZA65_RS16945	0.54	-1.5
3,661,367	-		DZA65_RS16945	0.54	-1.1
3,661,367	-		DZA65_RS16945	0.54	-0.4
3,661,384	+		DZA65_RS16945	0.55	-1.2
3,661,384	+		DZA65_RS16945	0.55	-0.4
3,661,385	-		DZA65_RS16945	0.55	-1.5
3,661,394	+		DZA65_RS16945	0.56	-1.0
3,661,394	+		DZA65_RS16945	0.56	-0.7
3,661,409	+		DZA65_RS16945	0.57	+0.8
3,661,410	-		DZA65_RS16945	0.57	-1.0
3,661,410	-		DZA65_RS16945	0.57	-1.2
3,661,470	+		DZA65_RS16945	0.61	-1.3
3,661,470	+		DZA65_RS16945	0.61	-1.2
3,661,470	+		DZA65_RS16945	0.61	+0.2
3,661,470	+		DZA65_RS16945	0.61	-0.2
3,661,470	+		DZA65_RS16945	0.61	-0.8
3,661,502	+		DZA65_RS16945	0.64	+1.2
3,661,502	+		DZA65_RS16945	0.64	+0.7
3,661,503	-		DZA65_RS16945	0.64	-0.8
3,661,543	+		DZA65_RS16945	0.67	-1.4
3,661,544	-		DZA65_RS16945	0.67	-2.0
3,661,544	-		DZA65_RS16945	0.67	+0.1
3,661,580	+		DZA65_RS16945	0.69	+1.5
3,661,635	+		DZA65_RS16945	0.73	+1.0
3,661,710	+		DZA65_RS16945	0.79	+0.6
3,661,710	+		DZA65_RS16945	0.79	+0.0
3,661,710	+		DZA65_RS16945	0.79	-0.2
3,661,710	+		DZA65_RS16945	0.79	-2.0
3,661,710	+		DZA65_RS16945	0.79	-0.5
3,661,710	+		DZA65_RS16945	0.79	-0.8
3,661,711	-		DZA65_RS16945	0.79	+0.2
3,661,711	-		DZA65_RS16945	0.79	+0.6
3,661,711	-		DZA65_RS16945	0.79	+1.4
3,661,711	-		DZA65_RS16945	0.79	+0.2
3,661,711	-		DZA65_RS16945	0.79	-0.8
3,661,711	-		DZA65_RS16945	0.79	-0.7
3,661,711	-		DZA65_RS16945	0.79	-2.2
3,661,711	-		DZA65_RS16945	0.79	-0.2
3,661,711	-		DZA65_RS16945	0.79	-1.0
3,661,765	+		DZA65_RS16945	0.83	-1.0
3,661,765	+		DZA65_RS16945	0.83	-0.2
3,661,855	+		DZA65_RS16945	0.90	+0.8
3,661,856	-		DZA65_RS16945	0.90	-0.9
3,662,038	+				+0.2
3,662,038	+				+0.2
3,662,038	+				-2.8
3,662,039	-				+0.3
3,662,039	-				+0.0
3,662,044	-				-0.3
3,662,084	+				-0.3
3,662,084	+				-2.4
3,662,085	-				-1.5
3,662,137	+				+0.9
3,662,137	+				-0.5
3,662,137	+				+0.8
3,662,137	+				+0.2
3,662,137	+				+0.2
3,662,137	+				+0.3
3,662,137	+				-0.5
3,662,137	+				-0.2
3,662,137	+				+1.0
3,662,138	-				+1.1
3,662,138	-				+1.2
3,662,138	-				-1.7
3,662,138	-				-1.2
3,662,186	+				-0.2
3,662,186	+				-0.4
3,662,187	-				+2.8
3,662,200	-				+0.0
3,662,205	+				-0.8
3,662,205	+				+1.3
3,662,206	-				-0.5
3,662,206	-				-0.5
3,662,261	+		DZA65_RS16950	0.20	-0.0
3,662,262	-		DZA65_RS16950	0.20	-0.6
3,662,291	+		DZA65_RS16950	0.28	-1.8
3,662,292	-		DZA65_RS16950	0.28	+0.3
3,662,307	+		DZA65_RS16950	0.32	-1.2
3,662,374	+		DZA65_RS16950	0.49	-0.2
3,662,374	+		DZA65_RS16950	0.49	-0.5
3,662,374	+		DZA65_RS16950	0.49	+0.3
3,662,374	+		DZA65_RS16950	0.49	-0.8
3,662,375	-		DZA65_RS16950	0.49	-0.7
3,662,375	-		DZA65_RS16950	0.49	-1.8
3,662,375	-		DZA65_RS16950	0.49	-0.8
3,662,375	-		DZA65_RS16950	0.49	+0.9
3,662,473	+		DZA65_RS16950	0.75	+0.3
3,662,473	+		DZA65_RS16950	0.75	+1.0
3,662,473	+		DZA65_RS16950	0.75	-0.4
3,662,473	+		DZA65_RS16950	0.75	-0.3
3,662,473	+		DZA65_RS16950	0.75	-1.3
3,662,473	+		DZA65_RS16950	0.75	-1.5
3,662,474	-		DZA65_RS16950	0.75	-0.6
3,662,474	-		DZA65_RS16950	0.75	-0.4
3,662,474	-		DZA65_RS16950	0.75	-0.9
3,662,474	-		DZA65_RS16950	0.75	-0.5
3,662,474	-		DZA65_RS16950	0.75	-0.8
3,662,520	+		DZA65_RS16950	0.87	+0.8
3,662,535	+				-1.8
3,662,535	+				-0.5
3,662,536	-				-0.2
3,662,536	-				-0.2
3,662,557	-				+0.1
3,662,563	-				-0.1
3,662,593	+				-0.9
3,662,594	-				+0.5
3,662,594	-				-1.4
3,662,680	+				+1.2
3,662,680	+				+1.5
3,662,680	+				+1.1
3,662,681	-				+0.1
3,662,681	-				-0.7
3,662,681	-				-1.5
3,662,683	-				+0.0
3,662,683	-				+0.4
3,662,713	-				-0.3
3,662,893	+				-0.2
3,662,910	+				-0.3
3,662,910	+				-0.5
3,662,911	-				-1.0
3,662,911	-				-0.6
3,662,937	+				+0.3
3,662,937	+				+0.4
3,662,937	+				-0.2
3,662,974	-				+0.0
3,662,978	+				+1.3
3,662,990	+				-0.5
3,662,995	+				+0.7
3,662,995	+				+0.9
3,662,996	-				-0.6
3,663,069	+				+1.1
3,663,070	-				-0.2
3,663,080	+				-0.4
3,663,080	+				+3.1
3,663,081	-				-0.6
3,663,081	-				-0.2
3,663,081	-				+0.6
3,663,107	+		DZA65_RS16955	0.13	-0.5
3,663,107	+		DZA65_RS16955	0.13	+0.1
3,663,107	+		DZA65_RS16955	0.13	-0.2
3,663,108	-		DZA65_RS16955	0.14	+0.1
3,663,126	+		DZA65_RS16955	0.16	-1.4
3,663,126	+		DZA65_RS16955	0.16	+0.4
3,663,127	-		DZA65_RS16955	0.16	-1.3
3,663,127	-		DZA65_RS16955	0.16	+1.3
3,663,127	-		DZA65_RS16955	0.16	-0.7
3,663,287	+		DZA65_RS16955	0.40	-0.1
3,663,287	+		DZA65_RS16955	0.40	-0.9
3,663,288	-		DZA65_RS16955	0.40	-0.1
3,663,288	-		DZA65_RS16955	0.40	-0.2
3,663,291	+		DZA65_RS16955	0.40	-1.5
3,663,291	+		DZA65_RS16955	0.40	-0.8
3,663,291	+		DZA65_RS16955	0.40	-0.5
3,663,291	+		DZA65_RS16955	0.40	-0.7
3,663,291	+		DZA65_RS16955	0.40	-1.5
3,663,292	-		DZA65_RS16955	0.40	+0.3
3,663,292	-		DZA65_RS16955	0.40	-1.2
3,663,292	-		DZA65_RS16955	0.40	+1.4
3,663,311	+		DZA65_RS16955	0.43	+0.4
3,663,493	+		DZA65_RS16955	0.70	+1.8
3,663,493	+		DZA65_RS16955	0.70	-1.0
3,663,493	+		DZA65_RS16955	0.70	-0.1
3,663,493	+		DZA65_RS16955	0.70	+0.2
3,663,493	+		DZA65_RS16955	0.70	+0.5
3,663,493	+		DZA65_RS16955	0.70	-0.1
3,663,493	+				+2.4
3,663,493	+		DZA65_RS16955	0.70	-0.8
3,663,493	+		DZA65_RS16955	0.70	-0.5
3,663,493	+		DZA65_RS16955	0.70	+0.4
3,663,493	+		DZA65_RS16955	0.70	-0.6
3,663,493	+		DZA65_RS16955	0.70	-1.7
3,663,493	+		DZA65_RS16955	0.70	+0.4
3,663,494	-		DZA65_RS16955	0.70	-0.5
3,663,494	-		DZA65_RS16955	0.70	+1.6
3,663,494	-		DZA65_RS16955	0.70	+0.1
3,663,494	-		DZA65_RS16955	0.70	-0.8
3,663,494	-		DZA65_RS16955	0.70	+0.8
3,663,494	-		DZA65_RS16955	0.70	+0.8
3,663,494	-		DZA65_RS16955	0.70	-2.8
3,663,494	-		DZA65_RS16955	0.70	-0.2
3,663,542	+		DZA65_RS16955	0.77	+1.7
3,663,542	+		DZA65_RS16955	0.77	-0.2