Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16570

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,578,087	+				-2.2
3,578,102	+				-0.1
3,578,102	+				-1.8
3,578,103	-				+0.9
3,578,103	-				+0.4
3,578,103	-				+1.2
3,578,103	-				+1.4
3,578,103	-				+1.0
3,578,103	-				+2.4
3,578,103	-				-0.5
3,578,103	-				-0.0
3,578,103	-				+0.6
3,578,103	-				+0.8
3,578,103	-				+0.8
3,578,104	+				-1.4
3,578,128	-				+0.6
3,578,128	-				-0.6
3,578,136	+				+0.2
3,578,136	+				-1.4
3,578,136	+				-1.0
3,578,136	+				-1.6
3,578,137	-				-0.4
3,578,137	-				+1.5
3,578,137	-				+0.2
3,578,137	-				+0.1
3,578,137	-				+0.3
3,578,137	-				-0.2
3,578,137	-				+0.1
3,578,137	-				+0.8
3,578,137	-				+0.4
3,578,137	-				+0.8
3,578,137	-				+1.4
3,578,137	-				-0.0
3,578,137	-				-1.7
3,578,161	-				+0.0
3,578,161	-				-0.1
3,578,161	-				-0.3
3,578,161	-				-1.2
3,578,161	-				+1.1
3,578,161	-				+0.2
3,578,161	-				+0.2
3,578,161	-				-0.5
3,578,161	-				-3.2
3,578,161	-				+0.2
3,578,161	-				+0.8
3,578,161	-				+0.5
3,578,180	+				+1.0
3,578,181	-				-0.2
3,578,181	-				-1.6
3,578,181	-				+0.5
3,578,181	-				+0.2
3,578,278	-				-0.2
3,578,278	-				+0.0
3,578,298	+				+0.8
3,578,299	-				+0.2
3,578,299	-				-1.2
3,578,321	+				-0.3
3,578,322	-				+0.3
3,578,322	-				+1.5
3,578,421	-		DZA65_RS16565	0.20	-0.4
3,578,606	+		DZA65_RS16565	0.42	+0.2
3,578,606	+		DZA65_RS16565	0.42	-1.6
3,578,606	+		DZA65_RS16565	0.42	-1.2
3,578,606	+		DZA65_RS16565	0.42	-0.2
3,578,606	+		DZA65_RS16565	0.42	-1.1
3,578,606	+		DZA65_RS16565	0.42	-0.6
3,578,606	+		DZA65_RS16565	0.42	-0.6
3,578,606	+		DZA65_RS16565	0.42	-1.1
3,578,607	-		DZA65_RS16565	0.42	-1.2
3,578,607	-		DZA65_RS16565	0.42	+0.8
3,578,607	-		DZA65_RS16565	0.42	+1.0
3,578,607	-		DZA65_RS16565	0.42	-1.4
3,578,607	-		DZA65_RS16565	0.42	+0.8
3,578,607	-		DZA65_RS16565	0.42	-0.1
3,578,607	-		DZA65_RS16565	0.42	+0.6
3,578,607	-		DZA65_RS16565	0.42	+0.8
3,578,607	-		DZA65_RS16565	0.42	-1.6
3,578,607	-		DZA65_RS16565	0.42	+0.5
3,578,607	-		DZA65_RS16565	0.42	-0.6
3,578,607	-		DZA65_RS16565	0.42	+0.8
3,578,607	-		DZA65_RS16565	0.42	+0.0
3,578,607	-		DZA65_RS16565	0.42	+0.1
3,578,655	+		DZA65_RS16565	0.48	+0.4
3,578,656	-		DZA65_RS16565	0.48	+0.8
3,578,656	-		DZA65_RS16565	0.48	-1.1
3,578,656	-		DZA65_RS16565	0.48	+0.4
3,578,658	-		DZA65_RS16565	0.49	-0.0
3,578,669	+		DZA65_RS16565	0.50	-0.1
3,578,669	+		DZA65_RS16565	0.50	-0.5
3,578,669	+		DZA65_RS16565	0.50	+0.5
3,578,669	+		DZA65_RS16565	0.50	-1.2
3,578,669	+		DZA65_RS16565	0.50	-1.6
3,578,669	+		DZA65_RS16565	0.50	-1.6
3,578,669	+		DZA65_RS16565	0.50	-0.6
3,578,669	+		DZA65_RS16565	0.50	-0.9
3,578,669	+		DZA65_RS16565	0.50	-1.6
3,578,669	+		DZA65_RS16565	0.50	+0.0
3,578,669	+		DZA65_RS16565	0.50	-0.1
3,578,669	+		DZA65_RS16565	0.50	-1.9
3,578,669	+		DZA65_RS16565	0.50	-0.5
3,578,669	+		DZA65_RS16565	0.50	-0.4
3,578,669	+		DZA65_RS16565	0.50	+1.4
3,578,669	+		DZA65_RS16565	0.50	-0.7
3,578,669	+		DZA65_RS16565	0.50	-1.6
3,578,669	+		DZA65_RS16565	0.50	+0.3
3,578,669	+		DZA65_RS16565	0.50	+1.2
3,578,669	+		DZA65_RS16565	0.50	+0.1
3,578,670	-		DZA65_RS16565	0.50	-2.0
3,578,670	-		DZA65_RS16565	0.50	-1.6
3,578,670	-		DZA65_RS16565	0.50	-0.5
3,578,670	-		DZA65_RS16565	0.50	+0.6
3,578,670	-		DZA65_RS16565	0.50	+0.1
3,578,670	-		DZA65_RS16565	0.50	-0.4
3,578,670	-		DZA65_RS16565	0.50	-0.3
3,578,670	-		DZA65_RS16565	0.50	+0.2
3,578,670	-		DZA65_RS16565	0.50	+2.4
3,578,670	-		DZA65_RS16565	0.50	-0.2
3,578,670	-		DZA65_RS16565	0.50	-0.2
3,578,670	-		DZA65_RS16565	0.50	+0.8
3,578,670	-		DZA65_RS16565	0.50	-1.0
3,578,670	-		DZA65_RS16565	0.50	-0.0
3,578,670	-		DZA65_RS16565	0.50	-0.2
3,578,670	-		DZA65_RS16565	0.50	-0.6
3,578,670	-		DZA65_RS16565	0.50	+0.5
3,578,670	-		DZA65_RS16565	0.50	+0.9
3,578,673	+		DZA65_RS16565	0.50	+0.0
3,578,673	+		DZA65_RS16565	0.50	-0.5
3,578,674	-		DZA65_RS16565	0.50	-0.3
3,578,674	-		DZA65_RS16565	0.50	+0.8
3,578,674	-		DZA65_RS16565	0.50	+0.3
3,578,701	+		DZA65_RS16565	0.54	-1.8
3,578,702	-		DZA65_RS16565	0.54	+1.1
3,578,702	-		DZA65_RS16565	0.54	+0.6
3,578,725	-		DZA65_RS16565	0.57	+1.2
3,578,829	+		DZA65_RS16565	0.69	-0.6
3,578,829	+		DZA65_RS16565	0.69	-1.4
3,578,987	+		DZA65_RS16565	0.89	-0.1
3,578,988	-		DZA65_RS16565	0.89	+1.6
3,578,988	-		DZA65_RS16565	0.89	+0.8
3,578,988	-		DZA65_RS16565	0.89	-0.1
3,578,988	-		DZA65_RS16565	0.89	+0.0
3,578,991	+		DZA65_RS16565	0.89	-0.2
3,578,992	-		DZA65_RS16565	0.89	-0.0
3,579,072	+				-0.6
3,579,072	+				-2.0
3,579,072	+				-0.9
3,579,072	+				-0.1
3,579,072	+				+0.1
3,579,072	+				-0.6
3,579,072	+				-0.2
3,579,073	-				+1.2
3,579,073	-				+1.3
3,579,073	-				+1.0
3,579,073	-				+0.5
3,579,073	-				-2.0
3,579,073	-				-1.0
3,579,073	-				+0.4
3,579,076	+				-0.2
3,579,076	+				-0.5
3,579,076	+				-0.5
3,579,077	-				-1.0
3,579,077	-				-1.3
3,579,077	-				+0.8
3,579,077	-				-0.6
3,579,077	-				+4.0
3,579,096	+				-1.2
3,579,168	+				+0.1
3,579,168	+				+0.8
3,579,168	+				+0.1
3,579,168	+				-0.2
3,579,169	-		DZA65_RS16570	0.10	-1.8
3,579,169	-		DZA65_RS16570	0.10	+0.8
3,579,219	+		DZA65_RS16570	0.16	-0.6
3,579,219	+		DZA65_RS16570	0.16	-1.6
3,579,309	+		DZA65_RS16570	0.25	+0.6
3,579,309	+		DZA65_RS16570	0.25	+1.0
3,579,309	+		DZA65_RS16570	0.25	-0.5
3,579,309	+		DZA65_RS16570	0.25	-0.8
3,579,309	+		DZA65_RS16570	0.25	-0.2
3,579,309	+		DZA65_RS16570	0.25	-0.1
3,579,309	+		DZA65_RS16570	0.25	-1.6
3,579,309	+		DZA65_RS16570	0.25	-0.2
3,579,309	+		DZA65_RS16570	0.25	+0.7
3,579,309	+		DZA65_RS16570	0.25	-0.6
3,579,309	+		DZA65_RS16570	0.25	+0.1
3,579,310	-		DZA65_RS16570	0.25	+0.2
3,579,310	-		DZA65_RS16570	0.25	-0.0
3,579,310	-		DZA65_RS16570	0.25	+0.8
3,579,310	-		DZA65_RS16570	0.25	-1.4
3,579,310	-		DZA65_RS16570	0.25	+0.0
3,579,310	-		DZA65_RS16570	0.25	-0.4
3,579,310	-		DZA65_RS16570	0.25	+1.5
3,579,310	-		DZA65_RS16570	0.25	+0.2
3,579,312	+		DZA65_RS16570	0.26	+0.5
3,579,312	+		DZA65_RS16570	0.26	+0.2
3,579,313	-		DZA65_RS16570	0.26	+1.5
3,579,392	+		DZA65_RS16570	0.34	+1.8
3,579,393	-		DZA65_RS16570	0.35	+2.1
3,579,427	+		DZA65_RS16570	0.38	-0.7
3,579,428	-		DZA65_RS16570	0.38	+0.2
3,579,451	+		DZA65_RS16570	0.41	+1.8
3,579,575	+		DZA65_RS16570	0.54	-0.8
3,579,576	-		DZA65_RS16570	0.55	+0.4
3,579,576	-		DZA65_RS16570	0.55	+0.8
3,579,576	-		DZA65_RS16570	0.55	-0.0
3,579,586	+		DZA65_RS16570	0.56	+0.2
3,579,633	-		DZA65_RS16570	0.61	+0.0
3,579,633	-		DZA65_RS16570	0.61	+1.4
3,579,682	+		DZA65_RS16570	0.66	-1.6
3,579,802	+		DZA65_RS16570	0.79	-1.6
3,579,802	+		DZA65_RS16570	0.79	+0.5
3,579,802	+		DZA65_RS16570	0.79	+1.1
3,579,802	+		DZA65_RS16570	0.79	+0.5
3,579,802	+		DZA65_RS16570	0.79	+0.7
3,579,802	+		DZA65_RS16570	0.79	+3.6
3,579,802	+		DZA65_RS16570	0.79	+0.2
3,579,802	+		DZA65_RS16570	0.79	+1.7
3,579,802	+		DZA65_RS16570	0.79	+0.0
3,579,802	+		DZA65_RS16570	0.79	+0.7
3,579,802	+		DZA65_RS16570	0.79	+0.2
3,579,802	+		DZA65_RS16570	0.79	-1.4
3,579,802	+		DZA65_RS16570	0.79	-0.2
3,579,802	+		DZA65_RS16570	0.79	+0.6
3,579,802	+		DZA65_RS16570	0.79	+0.4
3,579,802	+		DZA65_RS16570	0.79	+0.6
3,579,802	+		DZA65_RS16570	0.79	+1.1
3,579,802	+		DZA65_RS16570	0.79	+1.4
3,579,802	+		DZA65_RS16570	0.79	+0.1
3,579,802	+		DZA65_RS16570	0.79	+0.6
3,579,802	+		DZA65_RS16570	0.79	-0.2
3,579,802	+		DZA65_RS16570	0.79	+0.4
3,579,802	+		DZA65_RS16570	0.79	-0.1
3,579,802	+		DZA65_RS16570	0.79	+1.0
3,579,803	-		DZA65_RS16570	0.79	+0.4
3,579,803	-		DZA65_RS16570	0.79	+1.7
3,579,803	-		DZA65_RS16570	0.79	+0.0
3,579,803	-		DZA65_RS16570	0.79	-0.8
3,579,803	-		DZA65_RS16570	0.79	+0.2
3,579,803	-		DZA65_RS16570	0.79	-0.2
3,579,803	-		DZA65_RS16570	0.79	+0.1
3,579,803	-		DZA65_RS16570	0.79	-1.0
3,579,803	-		DZA65_RS16570	0.79	+2.2
3,579,803	-		DZA65_RS16570	0.79	-0.6
3,579,803	-		DZA65_RS16570	0.79	-0.5
3,579,803	-		DZA65_RS16570	0.79	-1.9
3,579,803	-		DZA65_RS16570	0.79	-0.2
3,579,803	-		DZA65_RS16570	0.79	+0.1
3,579,803	-		DZA65_RS16570	0.79	-0.5
3,579,803	-		DZA65_RS16570	0.79	-0.8
3,579,803	-		DZA65_RS16570	0.79	+0.8
3,579,803	-		DZA65_RS16570	0.79	-1.6
3,579,803	-		DZA65_RS16570	0.79	+1.8
3,579,803	-		DZA65_RS16570	0.79	-0.8
3,579,803	-		DZA65_RS16570	0.79	-0.6
3,579,803	-		DZA65_RS16570	0.79	+0.8
3,579,803	-		DZA65_RS16570	0.79	+0.8
3,579,803	-		DZA65_RS16570	0.79	-1.6
3,579,803	-		DZA65_RS16570	0.79	-1.0
3,579,803	-		DZA65_RS16570	0.79	+0.6
3,579,803	-		DZA65_RS16570	0.79	-0.2
3,579,803	-		DZA65_RS16570	0.79	-1.2
3,579,803	-		DZA65_RS16570	0.79	+0.3
3,579,989	+				-0.8
3,579,989	+				-0.4
3,579,989	+				-0.6
3,579,989	+				+1.3
3,579,989	+				+0.8
3,579,989	+				-0.7
3,579,989	+				-0.8
3,579,989	+				+0.1
3,579,989	+				+0.4
3,579,990	-				+0.3
3,579,990	-				+0.6
3,579,990	-				-0.2
3,579,990	-				-1.8
3,579,990	-				+0.4
3,579,990	-				-1.7
3,579,990	-				+1.5
3,579,990	-				+0.4
3,579,990	-				-1.6
3,579,990	-				-0.5
3,579,990	-				-0.1
3,579,990	-				+0.8
3,579,992	+				+0.1
3,579,992	+				+1.4
3,579,992	+				-0.2
3,579,992	+				+3.4
3,580,023	+				+0.2
3,580,023	+				-0.2
3,580,024	-				-0.8
3,580,024	-				-0.5
3,580,024	-				+0.7
3,580,024	-				+0.8
3,580,032	+				-0.2
3,580,032	+				+1.0
3,580,032	+				+1.4
3,580,032	+				+0.2
3,580,032	+				+0.2
3,580,032	+				+0.9
3,580,032	+				-1.3
3,580,032	+				+1.4
3,580,032	+				-0.7
3,580,032	+				-1.1
3,580,032	+				-0.3
3,580,033	-				+2.4
3,580,033	-				+0.0
3,580,033	-				-0.2
3,580,033	-				-0.6
3,580,033	-				+1.1
3,580,033	-				+2.0
3,580,033	-				+0.4
3,580,033	-				+0.8
3,580,033	-				+0.3
3,580,036	+				-0.0
3,580,036	+				-0.6
3,580,036	+				-0.2
3,580,036	+				-0.7
3,580,036	+				-1.8
3,580,036	+				-0.1
3,580,036	+				+2.1
3,580,036	+				-0.8
3,580,036	+				-0.0
3,580,036	+				+0.2
3,580,036	+				-0.7
3,580,037	-				+3.4
3,580,037	-				-0.4
3,580,037	-				+0.4
3,580,037	-				+0.8
3,580,037	-				-0.7
3,580,037	-				+1.4
3,580,037	-				+0.2
3,580,065	+		DZA65_RS16575	0.11	+0.2
3,580,065	+		DZA65_RS16575	0.11	-0.2
3,580,066	-		DZA65_RS16575	0.11	-1.6
3,580,066	-		DZA65_RS16575	0.11	+0.8
3,580,066	-		DZA65_RS16575	0.11	-0.2
3,580,078	-		DZA65_RS16575	0.16	+1.1
3,580,078	-		DZA65_RS16575	0.16	-0.1
3,580,078	-		DZA65_RS16575	0.16	-0.5
3,580,078	-		DZA65_RS16575	0.16	-0.0
3,580,144	+		DZA65_RS16575	0.41	-0.2
3,580,145	-		DZA65_RS16575	0.41	+0.9
3,580,145	-		DZA65_RS16575	0.41	+2.4
3,580,258	-		DZA65_RS16575	0.85	-0.6
3,580,258	-		DZA65_RS16575	0.85	-0.6
3,580,269	+		DZA65_RS16575	0.89	+2.1
3,580,270	-		DZA65_RS16575	0.89	-1.1
3,580,270	-		DZA65_RS16575	0.89	-2.4
3,580,293	+				+1.1
3,580,293	+				+0.8
3,580,294	-				-1.2
3,580,294	-				-2.2
3,580,294	-				-2.5
3,580,294	-				-2.0
3,580,322	+		DZA65_RS16580	0.18	-0.9
3,580,322	+		DZA65_RS16580	0.18	-1.2
3,580,331	+		DZA65_RS16580	0.23	+0.3
3,580,331	+		DZA65_RS16580	0.23	-1.1
3,580,331	+		DZA65_RS16580	0.23	+0.0
3,580,331	+		DZA65_RS16580	0.23	+0.3
3,580,331	+		DZA65_RS16580	0.23	+0.2
3,580,331	+		DZA65_RS16580	0.23	-1.5
3,580,331	+		DZA65_RS16580	0.23	-0.2
3,580,332	-		DZA65_RS16580	0.24	-0.4
3,580,332	-		DZA65_RS16580	0.24	+0.9
3,580,332	-		DZA65_RS16580	0.24	-1.5
3,580,368	+		DZA65_RS16580	0.47	-0.2
3,580,369	-		DZA65_RS16580	0.47	-0.2
3,580,369	-		DZA65_RS16580	0.47	-0.0
3,580,369	-		DZA65_RS16580	0.47	+0.9
3,580,386	+		DZA65_RS16580	0.58	-0.1
3,580,415	+		DZA65_RS16580	0.76	-0.4
3,580,415	+		DZA65_RS16580	0.76	-0.4
3,580,434	+		DZA65_RS16580	0.88	+0.4
3,580,434	+		DZA65_RS16580	0.88	-0.2
3,580,434	+		DZA65_RS16580	0.88	-0.6
3,580,435	-		DZA65_RS16580	0.89	+0.3
3,580,435	-		DZA65_RS16580	0.89	+0.8
3,580,435	-		DZA65_RS16580	0.89	-0.4
3,580,435	-		DZA65_RS16580	0.89	+0.4
3,580,435	-		DZA65_RS16580	0.89	-0.4
3,580,435	-		DZA65_RS16580	0.89	+0.2
3,580,435	-		DZA65_RS16580	0.89	-0.5
3,580,532	+		DZA65_RS16585	0.12	-0.5
3,580,532	+		DZA65_RS16585	0.12	+0.1
3,580,533	-		DZA65_RS16585	0.13	-1.5
3,580,575	-		DZA65_RS16585	0.19	-0.4
3,580,620	-		DZA65_RS16585	0.26	+0.5
3,580,646	+		DZA65_RS16585	0.29	+0.3
3,580,706	+		DZA65_RS16585	0.38	+0.3
3,580,706	+		DZA65_RS16585	0.38	-0.5
3,580,706	+		DZA65_RS16585	0.38	+0.2
3,580,707	-		DZA65_RS16585	0.39	-0.3
3,580,707	-		DZA65_RS16585	0.39	-0.4
3,580,710	+		DZA65_RS16585	0.39	+0.6
3,580,710	+		DZA65_RS16585	0.39	-1.9
3,580,710	+		DZA65_RS16585	0.39	+1.8
3,580,710	+		DZA65_RS16585	0.39	-0.8
3,580,710	+		DZA65_RS16585	0.39	+0.3
3,580,710	+		DZA65_RS16585	0.39	-0.8
3,580,710	+		DZA65_RS16585	0.39	-1.0
3,580,710	+		DZA65_RS16585	0.39	-1.4
3,580,710	+		DZA65_RS16585	0.39	+1.2
3,580,711	-		DZA65_RS16585	0.39	-0.5
3,580,711	-		DZA65_RS16585	0.39	+0.2
3,580,734	+		DZA65_RS16585	0.43	-0.2
3,580,734	+		DZA65_RS16585	0.43	-0.4
3,580,735	-		DZA65_RS16585	0.43	-1.0
3,580,752	+		DZA65_RS16585	0.45	+1.8
3,580,898	+		DZA65_RS16585	0.67	-0.8
3,580,928	+		DZA65_RS16585	0.72	-0.5
3,580,928	+		DZA65_RS16585	0.72	-1.0
3,580,929	-		DZA65_RS16585	0.72	-0.7
3,580,929	-		DZA65_RS16585	0.72	+0.5