Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16505

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,570,662	+		DZA65_RS16495	0.41	-0.4
3,570,662	+		DZA65_RS16495	0.41	-0.8
3,570,662	+		DZA65_RS16495	0.41	+1.0
3,570,662	+		DZA65_RS16495	0.41	-1.6
3,570,662	+		DZA65_RS16495	0.41	-1.5
3,570,662	+		DZA65_RS16495	0.41	+1.9
3,570,662	+		DZA65_RS16495	0.41	-2.1
3,570,662	+		DZA65_RS16495	0.41	+0.3
3,570,662	+		DZA65_RS16495	0.41	+1.1
3,570,663	-		DZA65_RS16495	0.41	+1.3
3,570,663	-		DZA65_RS16495	0.41	+0.6
3,570,663	-		DZA65_RS16495	0.41	-2.4
3,570,663	-		DZA65_RS16495	0.41	-0.2
3,570,663	-		DZA65_RS16495	0.41	-0.2
3,570,663	-		DZA65_RS16495	0.41	-1.8
3,570,663	-		DZA65_RS16495	0.41	+0.4
3,570,703	+		DZA65_RS16495	0.46	-1.3
3,570,703	+		DZA65_RS16495	0.46	+0.5
3,570,704	-		DZA65_RS16495	0.46	+1.8
3,570,714	+		DZA65_RS16495	0.48	-0.6
3,570,803	+		DZA65_RS16495	0.59	-2.4
3,570,803	+		DZA65_RS16495	0.59	+0.8
3,570,804	-		DZA65_RS16495	0.59	-0.2
3,570,804	-		DZA65_RS16495	0.59	+2.3
3,570,804	-		DZA65_RS16495	0.59	+0.6
3,570,806	+		DZA65_RS16495	0.60	-0.4
3,570,806	+		DZA65_RS16495	0.60	+0.3
3,570,807	-		DZA65_RS16495	0.60	+0.4
3,570,807	-		DZA65_RS16495	0.60	+0.6
3,570,807	-		DZA65_RS16495	0.60	+0.5
3,570,807	-		DZA65_RS16495	0.60	-0.8
3,570,807	-		DZA65_RS16495	0.60	+1.2
3,570,807	-		DZA65_RS16495	0.60	-0.1
3,570,807	-		DZA65_RS16495	0.60	-0.1
3,570,833	+		DZA65_RS16495	0.63	+0.6
3,570,833	+		DZA65_RS16495	0.63	-1.2
3,570,833	+		DZA65_RS16495	0.63	-0.5
3,570,834	-		DZA65_RS16495	0.63	-1.8
3,570,834	-		DZA65_RS16495	0.63	-0.7
3,570,869	+		DZA65_RS16495	0.68	-1.4
3,570,869	+		DZA65_RS16495	0.68	+0.0
3,570,870	-		DZA65_RS16495	0.68	-1.8
3,570,912	+		DZA65_RS16495	0.73	+0.2
3,570,912	+		DZA65_RS16495	0.73	+0.2
3,570,912	+		DZA65_RS16495	0.73	+1.8
3,570,912	+		DZA65_RS16495	0.73	+0.3
3,570,913	-		DZA65_RS16495	0.73	+0.8
3,570,988	+		DZA65_RS16495	0.83	-0.7
3,570,988	+		DZA65_RS16495	0.83	+0.6
3,570,988	+		DZA65_RS16495	0.83	-0.9
3,570,988	+		DZA65_RS16495	0.83	-0.2
3,571,012	+		DZA65_RS16495	0.86	-0.4
3,571,013	-		DZA65_RS16495	0.86	-0.2
3,571,015	+		DZA65_RS16495	0.87	-0.8
3,571,015	+		DZA65_RS16495	0.87	+0.3
3,571,015	+		DZA65_RS16495	0.87	-0.0
3,571,015	+		DZA65_RS16495	0.87	-0.2
3,571,015	+		DZA65_RS16495	0.87	+0.5
3,571,015	+		DZA65_RS16495	0.87	+1.2
3,571,016	-		DZA65_RS16495	0.87	+0.8
3,571,016	-		DZA65_RS16495	0.87	-0.0
3,571,016	-		DZA65_RS16495	0.87	-0.4
3,571,016	-		DZA65_RS16495	0.87	-0.9
3,571,023	+		DZA65_RS16495	0.88	-0.9
3,571,038	+		DZA65_RS16495	0.90	+0.4
3,571,076	+				+0.8
3,571,076	+				+0.7
3,571,076	+				+0.1
3,571,076	+				-0.7
3,571,076	+				-1.8
3,571,076	+				+0.8
3,571,076	+				-0.2
3,571,077	-				+0.8
3,571,102	+				-1.1
3,571,102	+				+1.0
3,571,103	-				+0.3
3,571,103	-				-0.1
3,571,110	+				-1.1
3,571,111	-				+0.0
3,571,111	-				+0.2
3,571,121	+				-0.2
3,571,121	+				+1.1
3,571,121	+				-0.9
3,571,122	-				+0.2
3,571,122	-				-0.9
3,571,122	-				+0.8
3,571,131	+				-0.7
3,571,131	+				+0.8
3,571,131	+				-1.5
3,571,132	-				+0.0
3,571,132	-				+0.4
3,571,132	-				+1.6
3,571,134	+		DZA65_RS22955	0.11	+0.8
3,571,135	-		DZA65_RS22955	0.11	-0.1
3,571,154	+		DZA65_RS22955	0.21	+0.2
3,571,172	+		DZA65_RS22955	0.30	-1.5
3,571,173	-		DZA65_RS22955	0.31	-0.5
3,571,183	+		DZA65_RS22955	0.36	+0.0
3,571,183	+		DZA65_RS22955	0.36	+0.4
3,571,184	-		DZA65_RS22955	0.36	-0.1
3,571,184	-		DZA65_RS22955	0.36	+0.1
3,571,227	-		DZA65_RS22955	0.58	-0.2
3,571,227	-		DZA65_RS22955	0.58	+1.1
3,571,235	+		DZA65_RS22955	0.63	-0.4
3,571,288	+				+0.4
3,571,288	+				+0.1
3,571,289	-				+0.4
3,571,293	+				+0.1
3,571,293	+				+0.1
3,571,293	+				+0.8
3,571,293	+				+0.8
3,571,294	-				+0.6
3,571,294	-				-0.4
3,571,302	-				+0.2
3,571,309	+				+0.3
3,571,309	+				+0.2
3,571,309	+				+0.2
3,571,309	+				+1.1
3,571,309	+				+0.1
3,571,309	+				-0.2
3,571,309	+				-0.5
3,571,309	+				-0.1
3,571,310	-				+0.5
3,571,310	-				-1.4
3,571,310	-				-0.5
3,571,310	-				+0.8
3,571,310	-				+0.0
3,571,310	-				-0.9
3,571,310	-				-0.7
3,571,310	-				+0.6
3,571,310	-				+0.2
3,571,408	+		DZA65_RS16500	0.42	+0.2
3,571,408	+		DZA65_RS16500	0.42	+0.5
3,571,408	+		DZA65_RS16500	0.42	-0.9
3,571,408	+		DZA65_RS16500	0.42	+1.1
3,571,409	-		DZA65_RS16500	0.43	-0.1
3,571,409	-		DZA65_RS16500	0.43	+0.1
3,571,409	-		DZA65_RS16500	0.43	-1.2
3,571,409	-		DZA65_RS16500	0.43	-1.2
3,571,409	-		DZA65_RS16500	0.43	-0.2
3,571,519	+		DZA65_RS16500	0.86	+0.7
3,571,519	+		DZA65_RS16500	0.86	-0.2
3,571,519	+		DZA65_RS16500	0.86	+0.5
3,571,538	+				+0.2
3,571,538	+				+0.8
3,571,539	-				-0.2
3,571,539	-				-1.2
3,571,539	-				+5.2
3,571,647	-		DZA65_RS16505	0.10	+0.3
3,571,647	-		DZA65_RS16505	0.10	+0.8
3,571,647	-		DZA65_RS16505	0.10	-0.2
3,571,681	-		DZA65_RS16505	0.22	-0.6
3,571,681	-		DZA65_RS16505	0.22	+0.9
3,571,700	+		DZA65_RS16505	0.28	+0.8
3,571,720	+		DZA65_RS16505	0.35	-0.7
3,571,720	+		DZA65_RS16505	0.35	+1.5
3,571,721	-		DZA65_RS16505	0.35	-1.6
3,571,740	+		DZA65_RS16505	0.42	+0.8
3,571,741	-		DZA65_RS16505	0.42	-0.2
3,571,901	+				+0.8
3,571,942	+				+0.5
3,572,043	+		DZA65_RS22960	0.20	-0.5
3,572,043	+		DZA65_RS22960	0.20	-0.8
3,572,116	-		DZA65_RS22960	0.31	-0.1
3,572,127	+		DZA65_RS22960	0.33	+0.2
3,572,145	+		DZA65_RS22960	0.35	-0.8
3,572,146	-		DZA65_RS22960	0.36	-1.1
3,572,219	+		DZA65_RS22960	0.47	-0.2
3,572,219	+		DZA65_RS22960	0.47	-0.2
3,572,219	+		DZA65_RS22960	0.47	-0.8
3,572,219	+		DZA65_RS22960	0.47	-0.7
3,572,219	+		DZA65_RS22960	0.47	+1.0
3,572,219	+		DZA65_RS22960	0.47	-0.2
3,572,220	-		DZA65_RS22960	0.47	-0.8
3,572,220	-		DZA65_RS22960	0.47	+0.2
3,572,220	-		DZA65_RS22960	0.47	+1.0
3,572,239	+		DZA65_RS22960	0.50	+0.8
3,572,239	+		DZA65_RS22960	0.50	+0.9
3,572,289	+		DZA65_RS22960	0.57	+0.9
3,572,289	+		DZA65_RS22960	0.57	+0.8
3,572,290	-		DZA65_RS22960	0.58	-0.9
3,572,327	+		DZA65_RS22960	0.63	-0.2
3,572,328	-				+1.8
3,572,350	+		DZA65_RS22960	0.67	-0.3
3,572,351	-		DZA65_RS22960	0.67	+0.2
3,572,351	-		DZA65_RS22960	0.67	-1.2
3,572,352	+		DZA65_RS22960	0.67	-0.2
3,572,453	-		DZA65_RS22960	0.83	-0.0
3,572,455	+		DZA65_RS22960	0.83	+0.3
3,572,455	+		DZA65_RS22960	0.83	+0.9
3,572,455	+		DZA65_RS22960	0.83	-1.0
3,572,455	+		DZA65_RS22960	0.83	-2.1
3,572,455	+		DZA65_RS22960	0.83	-1.4
3,572,456	-		DZA65_RS22960	0.83	+1.6
3,572,456	-		DZA65_RS22960	0.83	+0.8
3,572,456	-		DZA65_RS22960	0.83	-0.2
3,572,561	-				-0.6
3,572,561	-				+2.1
3,572,625	+				+0.3
3,572,628	+				+0.5