Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16230

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,520,041	-		DZA65_RS16225	0.11	+0.7
3,520,066	+		DZA65_RS16225	0.13	+0.9
3,520,067	-		DZA65_RS16225	0.13	+0.2
3,520,074	+		DZA65_RS16225	0.14	-0.4
3,520,075	-		DZA65_RS16225	0.14	+0.4
3,520,075	-		DZA65_RS16225	0.14	+1.4
3,520,079	+		DZA65_RS16225	0.14	-0.0
3,520,113	+		DZA65_RS16225	0.18	+0.7
3,520,113	+		DZA65_RS16225	0.18	-0.3
3,520,113	+		DZA65_RS16225	0.18	+0.2
3,520,114	-		DZA65_RS16225	0.18	+0.7
3,520,114	-		DZA65_RS16225	0.18	-0.3
3,520,166	+		DZA65_RS16225	0.23	+0.6
3,520,166	+		DZA65_RS16225	0.23	+2.6
3,520,166	+		DZA65_RS16225	0.23	+0.3
3,520,166	+		DZA65_RS16225	0.23	+0.6
3,520,167	-		DZA65_RS16225	0.23	+0.9
3,520,167	-		DZA65_RS16225	0.23	-0.3
3,520,167	-		DZA65_RS16225	0.23	+0.3
3,520,167	-		DZA65_RS16225	0.23	-0.8
3,520,214	+		DZA65_RS16225	0.28	+0.2
3,520,214	+		DZA65_RS16225	0.28	-3.0
3,520,215	-		DZA65_RS16225	0.28	-0.4
3,520,215	-		DZA65_RS16225	0.28	-0.3
3,520,218	+		DZA65_RS16225	0.29	-2.4
3,520,218	+		DZA65_RS16225	0.29	-1.3
3,520,218	+		DZA65_RS16225	0.29	+1.9
3,520,218	+		DZA65_RS16225	0.29	-0.6
3,520,219	-		DZA65_RS16225	0.29	-1.0
3,520,219	-		DZA65_RS16225	0.29	+1.1
3,520,263	-		DZA65_RS16225	0.33	-1.6
3,520,293	+		DZA65_RS16225	0.36	-1.6
3,520,294	-		DZA65_RS16225	0.36	-0.3
3,520,294	-		DZA65_RS16225	0.36	-0.7
3,520,294	-		DZA65_RS16225	0.36	+0.9
3,520,296	+		DZA65_RS16225	0.37	-0.3
3,520,296	+		DZA65_RS16225	0.37	-0.1
3,520,297	-		DZA65_RS16225	0.37	+0.0
3,520,334	+		DZA65_RS16225	0.40	-0.3
3,520,334	+		DZA65_RS16225	0.40	+0.3
3,520,334	+		DZA65_RS16225	0.40	+1.2
3,520,334	+		DZA65_RS16225	0.40	+2.6
3,520,334	+		DZA65_RS16225	0.40	+1.1
3,520,334	+		DZA65_RS16225	0.40	+1.0
3,520,335	-		DZA65_RS16225	0.41	+0.3
3,520,337	+		DZA65_RS16225	0.41	+0.3
3,520,337	+		DZA65_RS16225	0.41	+0.6
3,520,337	+		DZA65_RS16225	0.41	+0.5
3,520,338	-		DZA65_RS16225	0.41	-0.3
3,520,338	-		DZA65_RS16225	0.41	-0.3
3,520,338	-		DZA65_RS16225	0.41	+0.5
3,520,338	-		DZA65_RS16225	0.41	-1.8
3,520,492	+		DZA65_RS16225	0.57	+0.2
3,520,493	-		DZA65_RS16225	0.57	-0.1
3,520,493	-		DZA65_RS16225	0.57	-0.0
3,520,494	+		DZA65_RS16225	0.57	-0.1
3,520,494	+		DZA65_RS16225	0.57	-0.6
3,520,494	+		DZA65_RS16225	0.57	+0.1
3,520,494	+		DZA65_RS16225	0.57	-0.8
3,520,494	+		DZA65_RS16225	0.57	+0.4
3,520,494	+		DZA65_RS16225	0.57	+1.2
3,520,494	+		DZA65_RS16225	0.57	+0.3
3,520,495	-		DZA65_RS16225	0.57	+1.5
3,520,495	-		DZA65_RS16225	0.57	+0.4
3,520,495	-		DZA65_RS16225	0.57	-0.3
3,520,495	-		DZA65_RS16225	0.57	+0.7
3,520,498	+		DZA65_RS16225	0.57	+2.1
3,520,499	-		DZA65_RS16225	0.57	+0.2
3,520,499	-		DZA65_RS16225	0.57	+0.3
3,520,499	-		DZA65_RS16225	0.57	+1.0
3,520,556	-		DZA65_RS16225	0.63	+0.2
3,520,570	+		DZA65_RS16225	0.65	-0.2
3,520,570	+		DZA65_RS16225	0.65	+0.7
3,520,570	+		DZA65_RS16225	0.65	-2.8
3,520,571	-		DZA65_RS16225	0.65	-0.4
3,520,589	-		DZA65_RS16225	0.66	-0.3
3,520,685	+		DZA65_RS16225	0.76	-0.8
3,520,685	+		DZA65_RS16225	0.76	+0.8
3,520,710	-		DZA65_RS16225	0.79	-1.1
3,520,710	-		DZA65_RS16225	0.79	+0.6
3,520,757	+		DZA65_RS16225	0.84	+1.0
3,520,757	+		DZA65_RS16225	0.84	-0.4
3,520,762	+		DZA65_RS16225	0.84	+1.3
3,520,762	+		DZA65_RS16225	0.84	-0.0
3,520,762	+		DZA65_RS16225	0.84	+0.7
3,520,762	+		DZA65_RS16225	0.84	-0.8
3,520,762	+		DZA65_RS16225	0.84	-0.3
3,520,762	+		DZA65_RS16225	0.84	+1.4
3,520,763	-		DZA65_RS16225	0.84	+0.3
3,520,763	-		DZA65_RS16225	0.84	-0.0
3,520,763	-		DZA65_RS16225	0.84	+0.7
3,520,763	-		DZA65_RS16225	0.84	+0.4
3,520,763	-		DZA65_RS16225	0.84	-1.6
3,520,763	-		DZA65_RS16225	0.84	-2.3
3,520,763	-		DZA65_RS16225	0.84	-0.1
3,520,763	-		DZA65_RS16225	0.84	+0.3
3,520,764	+		DZA65_RS16225	0.84	-0.0
3,520,764	+		DZA65_RS16225	0.84	-0.7
3,520,765	-		DZA65_RS16225	0.84	-1.1
3,520,765	-		DZA65_RS16225	0.84	-0.8
3,520,765	-		DZA65_RS16225	0.84	+0.5
3,520,765	-		DZA65_RS16225	0.84	+0.3
3,520,765	-		DZA65_RS16225	0.84	+0.9
3,520,767	+		DZA65_RS16225	0.85	-0.7
3,520,767	+		DZA65_RS16225	0.85	-0.6
3,520,768	-		DZA65_RS16225	0.85	-0.6
3,520,768	-		DZA65_RS16225	0.85	-0.3
3,520,781	+		DZA65_RS16225	0.86	+0.8
3,520,781	+		DZA65_RS16225	0.86	+1.9
3,520,782	-		DZA65_RS16225	0.86	-0.5
3,520,782	-		DZA65_RS16225	0.86	+0.2
3,520,782	-		DZA65_RS16225	0.86	-1.3
3,520,896	+				+0.4
3,520,921	-				-1.0
3,520,932	+				+2.7
3,520,932	+				-1.0
3,520,932	+				+0.7
3,520,932	+				-0.5
3,520,932	+				-3.4
3,520,932	+				-0.4
3,520,932	+				-0.1
3,520,932	+				+0.7
3,520,932	+				-0.7
3,520,933	-				-2.3
3,520,933	-				-0.5
3,520,933	-				+1.0
3,520,933	-				-1.3
3,520,933	-				-1.3
3,520,933	-				-0.6
3,520,933	-				-0.1
3,520,933	-				-0.1
3,520,962	-				+0.2
3,520,966	+				+0.2
3,520,976	-				+0.1
3,520,985	-				+0.7
3,521,002	+				+0.0
3,521,002	+				-1.1
3,521,003	-				-0.7
3,521,003	-				-0.6
3,521,003	-				+1.7
3,521,003	-				-0.4
3,521,003	-				-0.6
3,521,086	-				-0.4
3,521,088	+				-0.8
3,521,088	+				+2.1
3,521,088	+				-0.9
3,521,088	+				-0.3
3,521,089	-				-2.8
3,521,089	-				+0.2
3,521,094	-				-0.3
3,521,124	+				-1.6
3,521,125	-				+1.1
3,521,125	-				-0.7
3,521,161	+		DZA65_RS16230	0.14	+0.7
3,521,162	-		DZA65_RS16230	0.14	-0.7
3,521,182	-		DZA65_RS16230	0.16	+0.2
3,521,182	-		DZA65_RS16230	0.16	-1.3
3,521,271	+		DZA65_RS16230	0.27	+0.4
3,521,272	-		DZA65_RS16230	0.27	+3.2
3,521,272	-		DZA65_RS16230	0.27	+0.7
3,521,325	+		DZA65_RS16230	0.33	+1.6
3,521,383	-		DZA65_RS16230	0.40	-0.0
3,521,388	+		DZA65_RS16230	0.41	-0.6
3,521,388	+		DZA65_RS16230	0.41	+0.7
3,521,388	+		DZA65_RS16230	0.41	+1.4
3,521,390	+		DZA65_RS16230	0.41	-0.8
3,521,390	+		DZA65_RS16230	0.41	-0.8
3,521,420	+		DZA65_RS16230	0.44	-0.4
3,521,451	-		DZA65_RS16230	0.48	+0.5
3,521,463	+		DZA65_RS16230	0.49	+0.1
3,521,638	-		DZA65_RS16230	0.70	-0.8
3,521,638	-		DZA65_RS16230	0.70	-0.5
3,521,639	+		DZA65_RS16230	0.70	+0.2
3,521,639	+		DZA65_RS16230	0.70	-0.3
3,521,640	-		DZA65_RS16230	0.70	+1.7
3,521,640	-		DZA65_RS16230	0.70	+1.4
3,521,640	-		DZA65_RS16230	0.70	+0.2
3,521,679	+		DZA65_RS16230	0.75	-1.6
3,521,679	+		DZA65_RS16230	0.75	-2.1
3,521,679	+		DZA65_RS16230	0.75	-0.5
3,521,680	-		DZA65_RS16230	0.75	-1.3
3,521,680	-		DZA65_RS16230	0.75	+1.7
3,521,707	-		DZA65_RS16230	0.78	+0.7
3,521,719	-		DZA65_RS16230	0.79	-0.1
3,521,757	+		DZA65_RS16230	0.84	-1.2
3,521,758	-		DZA65_RS16230	0.84	-0.8
3,521,758	-		DZA65_RS16230	0.84	-0.4
3,521,766	+		DZA65_RS16230	0.85	-1.8
3,521,766	+		DZA65_RS16230	0.85	-1.8
3,521,766	+		DZA65_RS16230	0.85	+0.0
3,521,767	-		DZA65_RS16230	0.85	+0.5
3,521,768	+		DZA65_RS16230	0.85	+0.2
3,521,768	+		DZA65_RS16230	0.85	+0.0
3,521,768	+		DZA65_RS16230	0.85	+0.2
3,521,768	+		DZA65_RS16230	0.85	+1.8
3,521,768	+		DZA65_RS16230	0.85	-2.6
3,521,768	+		DZA65_RS16230	0.85	+1.2
3,521,769	-		DZA65_RS16230	0.85	-0.3
3,521,769	-		DZA65_RS16230	0.85	+0.6
3,521,790	+		DZA65_RS16230	0.88	+1.1
3,521,859	+				+0.9
3,521,860	-				-0.3
3,521,860	-				+0.9
3,521,860	-				+1.0
3,521,863	+				-2.6
3,521,891	+				-0.1
3,521,891	+				-0.7
3,521,891	+				-1.2
3,521,891	+				-0.6
3,521,892	-				+0.6
3,521,892	-				+0.3
3,521,895	+				+2.7
3,521,895	+				-0.4
3,521,895	+				-0.8
3,521,895	+				-1.3
3,521,895	+				-0.2
3,521,896	-				-1.6
3,521,896	-				+0.2
3,521,896	-				-0.8
3,521,896	-				+1.6
3,521,909	+				-1.3
3,521,945	+				-0.8
3,521,946	-				+0.5
3,521,946	-				-0.7
3,522,024	-				+0.6
3,522,106	+				-0.3
3,522,106	+				-1.8
3,522,124	+				-0.6
3,522,155	+				+0.9
3,522,159	+				+0.5
3,522,159	+				-0.4
3,522,159	+				-0.7
3,522,159	+				+0.0
3,522,159	+				-0.1
3,522,160	-				+0.9
3,522,160	-				+1.1
3,522,189	-				+1.6
3,522,189	-				+0.1
3,522,193	+				-0.8
3,522,193	+				+2.8
3,522,193	+				+0.4
3,522,193	+				-1.3
3,522,193	+				+1.7
3,522,194	-				-0.8
3,522,194	-				-0.2
3,522,194	-				+0.4
3,522,267	-				+1.2
3,522,269	+				+1.4
3,522,269	+				-0.8
3,522,313	-				+0.1
3,522,313	-				-0.3
3,522,345	-				+0.9
3,522,593	-		DZA65_RS16235	0.33	+1.0
3,522,773	+		DZA65_RS16235	0.55	-0.7
3,522,773	+		DZA65_RS16235	0.55	-1.6
3,522,837	+		DZA65_RS16235	0.63	-1.8
3,522,837	+		DZA65_RS16235	0.63	-1.3
3,522,837	+		DZA65_RS16235	0.63	+0.7
3,522,837	+		DZA65_RS16235	0.63	-0.1
3,522,837	+		DZA65_RS16235	0.63	-1.1
3,522,838	-		DZA65_RS16235	0.63	+1.4
3,522,838	-		DZA65_RS16235	0.63	-0.5
3,522,838	-		DZA65_RS16235	0.63	-0.3
3,522,838	-		DZA65_RS16235	0.63	+0.3
3,522,838	-		DZA65_RS16235	0.63	+1.1
3,522,838	-		DZA65_RS16235	0.63	-1.3
3,522,838	-		DZA65_RS16235	0.63	-0.3
3,522,838	-		DZA65_RS16235	0.63	-1.0
3,522,838	-		DZA65_RS16235	0.63	+1.7