Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16210

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,515,533	+				+0.7
3,515,540	+				-1.8
3,515,540	+				-0.4
3,515,541	-				+0.9
3,515,541	-				-0.4
3,515,561	+				-0.2
3,515,562	-				+0.7
3,515,602	+				+0.1
3,515,602	+				+0.2
3,515,730	+		DZA65_RS16205	0.25	-1.4
3,515,730	+		DZA65_RS16205	0.25	+0.7
3,515,731	-		DZA65_RS16205	0.25	+1.0
3,515,731	-		DZA65_RS16205	0.25	-0.4
3,515,731	-		DZA65_RS16205	0.25	+0.2
3,515,815	-		DZA65_RS16205	0.44	-2.6
3,515,854	-		DZA65_RS16205	0.52	+0.7
3,515,868	+		DZA65_RS16205	0.55	+0.2
3,515,868	+		DZA65_RS16205	0.55	+0.5
3,515,868	+		DZA65_RS16205	0.55	+0.2
3,515,868	+		DZA65_RS16205	0.55	-0.5
3,515,868	+		DZA65_RS16205	0.55	+1.7
3,515,868	+		DZA65_RS16205	0.55	-0.8
3,515,869	-		DZA65_RS16205	0.55	+0.9
3,515,869	-		DZA65_RS16205	0.55	-0.3
3,515,869	-		DZA65_RS16205	0.55	-0.0
3,515,869	-		DZA65_RS16205	0.55	-0.6
3,515,869	-		DZA65_RS16205	0.55	+0.7
3,515,873	+		DZA65_RS16205	0.56	-3.3
3,515,873	+		DZA65_RS16205	0.56	+0.5
3,515,873	+		DZA65_RS16205	0.56	-1.6
3,515,873	+		DZA65_RS16205	0.56	+0.7
3,515,873	+		DZA65_RS16205	0.56	-1.3
3,515,873	+		DZA65_RS16205	0.56	-0.8
3,515,874	-		DZA65_RS16205	0.56	-1.6
3,515,874	-		DZA65_RS16205	0.56	-0.1
3,515,874	-		DZA65_RS16205	0.56	+0.0
3,515,874	-		DZA65_RS16205	0.56	+1.7
3,515,874	-		DZA65_RS16205	0.56	+0.2
3,515,874	-		DZA65_RS16205	0.56	-0.6
3,515,874	-		DZA65_RS16205	0.56	+0.0
3,515,874	-		DZA65_RS16205	0.56	+3.0
3,516,008	+		DZA65_RS16205	0.85	+0.0
3,516,008	+		DZA65_RS16205	0.85	+0.7
3,516,008	+		DZA65_RS16205	0.85	+0.1
3,516,143	-				+0.6
3,516,143	-				+1.1
3,516,178	+				+0.1
3,516,345	-				-0.5
3,516,360	-				+0.4
3,516,360	-				-1.3
3,516,389	+				+0.2
3,516,425	+				+0.4
3,516,425	+				+0.0
3,516,426	-				-2.0
3,516,696	+		DZA65_RS16210	0.28	+0.7
3,516,708	+		DZA65_RS16210	0.29	+0.1
3,516,708	+		DZA65_RS16210	0.29	-0.1
3,516,708	+		DZA65_RS16210	0.29	+1.0
3,516,709	-		DZA65_RS16210	0.29	-0.5
3,516,709	-		DZA65_RS16210	0.29	+0.2
3,516,709	-		DZA65_RS16210	0.29	+0.6
3,516,709	-		DZA65_RS16210	0.29	-0.8
3,516,709	-		DZA65_RS16210	0.29	-0.4
3,516,709	-		DZA65_RS16210	0.29	+3.4
3,516,826	+		DZA65_RS16210	0.39	+0.2
3,516,826	+		DZA65_RS16210	0.39	-0.7
3,516,826	+		DZA65_RS16210	0.39	-0.3
3,516,827	-		DZA65_RS16210	0.39	-0.5
3,516,903	+		DZA65_RS16210	0.45	+0.3
3,516,903	+		DZA65_RS16210	0.45	-0.8
3,516,903	+		DZA65_RS16210	0.45	+1.6
3,516,903	+		DZA65_RS16210	0.45	-1.3
3,516,903	+		DZA65_RS16210	0.45	+0.2
3,516,904	-		DZA65_RS16210	0.45	-0.3
3,516,904	-		DZA65_RS16210	0.45	-0.1
3,516,904	-		DZA65_RS16210	0.45	-0.6
3,516,904	-		DZA65_RS16210	0.45	-0.3
3,516,904	-		DZA65_RS16210	0.45	-0.7
3,516,905	+		DZA65_RS16210	0.45	-0.8
3,516,905	+		DZA65_RS16210	0.45	+0.6
3,516,905	+		DZA65_RS16210	0.45	-0.8
3,517,059	+		DZA65_RS16210	0.57	-1.5
3,517,059	+		DZA65_RS16210	0.57	+0.7
3,517,059	+		DZA65_RS16210	0.57	+1.1
3,517,059	+		DZA65_RS16210	0.57	-0.1
3,517,059	+		DZA65_RS16210	0.57	-0.6
3,517,059	+		DZA65_RS16210	0.57	+1.2
3,517,059	+		DZA65_RS16210	0.57	-0.9
3,517,059	+		DZA65_RS16210	0.57	-0.1
3,517,059	+		DZA65_RS16210	0.57	-0.5
3,517,059	+		DZA65_RS16210	0.57	+0.2
3,517,059	+		DZA65_RS16210	0.57	-0.8
3,517,060	-		DZA65_RS16210	0.57	+0.4
3,517,060	-		DZA65_RS16210	0.57	-0.4
3,517,060	-				+1.7
3,517,060	-		DZA65_RS16210	0.57	+2.1
3,517,060	-		DZA65_RS16210	0.57	-1.8
3,517,060	-		DZA65_RS16210	0.57	+1.7
3,517,060	-		DZA65_RS16210	0.57	-0.7
3,517,060	-		DZA65_RS16210	0.57	+1.6
3,517,060	-		DZA65_RS16210	0.57	+4.0
3,517,060	-		DZA65_RS16210	0.57	-0.6
3,517,060	-		DZA65_RS16210	0.57	+1.3
3,517,060	-		DZA65_RS16210	0.57	+1.3
3,517,060	-		DZA65_RS16210	0.57	+0.6
3,517,060	-		DZA65_RS16210	0.57	-0.4
3,517,060	-		DZA65_RS16210	0.57	+0.3
3,517,062	+		DZA65_RS16210	0.57	+0.7
3,517,062	+		DZA65_RS16210	0.57	+2.6
3,517,062	+		DZA65_RS16210	0.57	+0.6
3,517,063	-		DZA65_RS16210	0.58	-0.8
3,517,063	-		DZA65_RS16210	0.58	+1.1
3,517,063	-		DZA65_RS16210	0.58	-0.7
3,517,068	+		DZA65_RS16210	0.58	+0.3
3,517,194	+		DZA65_RS16210	0.68	-0.8
3,517,194	+		DZA65_RS16210	0.68	+0.7
3,517,194	+		DZA65_RS16210	0.68	-0.6
3,517,194	+		DZA65_RS16210	0.68	-0.3
3,517,194	+				+0.2
3,517,194	+		DZA65_RS16210	0.68	+0.4
3,517,194	+		DZA65_RS16210	0.68	+0.7
3,517,194	+		DZA65_RS16210	0.68	+1.3
3,517,194	+		DZA65_RS16210	0.68	-0.8
3,517,194	+		DZA65_RS16210	0.68	-0.3
3,517,194	+		DZA65_RS16210	0.68	+0.3
3,517,194	+		DZA65_RS16210	0.68	-0.3
3,517,195	-		DZA65_RS16210	0.68	+1.1
3,517,195	-		DZA65_RS16210	0.68	+1.3
3,517,195	-		DZA65_RS16210	0.68	-0.3
3,517,195	-		DZA65_RS16210	0.68	+2.6
3,517,195	-		DZA65_RS16210	0.68	+0.7
3,517,195	-		DZA65_RS16210	0.68	-2.6
3,517,195	-		DZA65_RS16210	0.68	+0.0
3,517,195	-		DZA65_RS16210	0.68	-0.8
3,517,195	-		DZA65_RS16210	0.68	-0.8
3,517,195	-		DZA65_RS16210	0.68	+0.2
3,517,195	-		DZA65_RS16210	0.68	-1.8
3,517,281	+		DZA65_RS16210	0.75	+0.3
3,517,282	-		DZA65_RS16210	0.75	-1.3
3,517,337	+		DZA65_RS16210	0.79	+0.1
3,517,337	+		DZA65_RS16210	0.79	-0.8
3,517,338	-		DZA65_RS16210	0.80	-0.3
3,517,338	-		DZA65_RS16210	0.80	+0.1
3,517,341	+		DZA65_RS16210	0.80	-0.6
3,517,342	-		DZA65_RS16210	0.80	+0.1
3,517,342	-		DZA65_RS16210	0.80	+0.2
3,517,403	+		DZA65_RS16210	0.85	+0.7
3,517,403	+		DZA65_RS16210	0.85	+0.2
3,517,404	-		DZA65_RS16210	0.85	-0.3
3,517,404	-		DZA65_RS16210	0.85	+0.2
3,517,404	-		DZA65_RS16210	0.85	+0.0
3,517,452	+		DZA65_RS16210	0.89	-1.2
3,517,452	+		DZA65_RS16210	0.89	+0.2
3,517,452	+		DZA65_RS16210	0.89	-1.1
3,517,453	-		DZA65_RS16210	0.89	-1.6
3,517,453	-		DZA65_RS16210	0.89	-0.4
3,517,489	+				-0.8
3,517,489	+				-1.1
3,517,490	-				+0.1
3,517,490	-				-0.8
3,517,490	-				-0.5
3,517,490	-				-0.7
3,517,565	+				+0.3
3,517,569	+				-0.3
3,517,598	+				-2.4
3,517,598	+				-0.9
3,517,598	+				-1.4
3,517,599	-				+0.2
3,517,599	-				+0.7
3,517,599	-				-0.1
3,517,599	-				+0.5
3,517,599	-				-0.3
3,517,602	+				+0.9
3,517,602	+				-0.3
3,517,603	-				+1.6
3,517,624	+				-0.8
3,517,624	+				-0.3
3,517,624	+				+0.1
3,517,624	+				+0.3
3,517,625	-				-0.3
3,517,625	-				+0.1
3,517,653	+				-1.1
3,517,653	+				-1.0
3,517,653	+				-2.1
3,517,653	+				+0.1
3,517,653	+				-0.0
3,517,654	-				-2.3
3,517,655	+				-0.7
3,517,655	+				+1.7
3,517,655	+				-0.4
3,517,656	-				+0.7
3,517,656	-				+1.3
3,517,656	-				-1.1
3,517,656	-				-0.0
3,517,676	+				-0.3
3,517,676	+				-0.2
3,517,676	+				+1.1
3,517,791	+		DZA65_RS16215	0.17	-0.3
3,517,792	-		DZA65_RS16215	0.17	-0.1
3,517,922	+		DZA65_RS16215	0.29	+0.2
3,518,049	+		DZA65_RS16215	0.41	+1.7
3,518,049	+		DZA65_RS16215	0.41	-1.1
3,518,259	+		DZA65_RS16215	0.60	+0.4
3,518,259	+		DZA65_RS16215	0.60	+0.7
3,518,259	+		DZA65_RS16215	0.60	+0.7
3,518,260	-		DZA65_RS16215	0.60	-0.3
3,518,260	-		DZA65_RS16215	0.60	-1.8
3,518,274	-		DZA65_RS16215	0.62	+0.7
3,518,282	-		DZA65_RS16215	0.62	+1.3
3,518,282	-		DZA65_RS16215	0.62	-0.3
3,518,295	+		DZA65_RS16215	0.64	+0.3
3,518,295	+		DZA65_RS16215	0.64	-0.5
3,518,296	-		DZA65_RS16215	0.64	-2.4
3,518,296	-		DZA65_RS16215	0.64	-0.3
3,518,296	-		DZA65_RS16215	0.64	+0.0
3,518,312	+		DZA65_RS16215	0.65	-0.5
3,518,316	+		DZA65_RS16215	0.66	+0.4
3,518,316	+		DZA65_RS16215	0.66	-1.3
3,518,316	+		DZA65_RS16215	0.66	-0.7
3,518,317	-		DZA65_RS16215	0.66	+0.0
3,518,317	-		DZA65_RS16215	0.66	+0.7
3,518,361	-		DZA65_RS16215	0.70	-0.3
3,518,361	-		DZA65_RS16215	0.70	-2.0
3,518,484	+		DZA65_RS16215	0.81	+0.4
3,518,484	+		DZA65_RS16215	0.81	-1.1
3,518,484	+		DZA65_RS16215	0.81	-0.6
3,518,485	-		DZA65_RS16215	0.81	+0.5