Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16200

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,514,005	+		DZA65_RS16195	0.44	+0.1
3,514,005	+		DZA65_RS16195	0.44	-1.8
3,514,006	-		DZA65_RS16195	0.44	+1.0
3,514,006	-		DZA65_RS16195	0.44	-0.3
3,514,006	-		DZA65_RS16195	0.44	-0.1
3,514,006	-		DZA65_RS16195	0.44	+1.2
3,514,048	+		DZA65_RS16195	0.47	+1.6
3,514,048	+		DZA65_RS16195	0.47	-1.0
3,514,048	+		DZA65_RS16195	0.47	-0.4
3,514,049	-		DZA65_RS16195	0.47	-1.4
3,514,049	-		DZA65_RS16195	0.47	-0.5
3,514,049	-		DZA65_RS16195	0.47	+2.1
3,514,049	-				-0.3
3,514,049	-		DZA65_RS16195	0.47	+0.3
3,514,170	+		DZA65_RS16195	0.56	-1.4
3,514,170	+		DZA65_RS16195	0.56	-0.3
3,514,170	+		DZA65_RS16195	0.56	-0.5
3,514,170	+		DZA65_RS16195	0.56	-2.0
3,514,170	+		DZA65_RS16195	0.56	+0.8
3,514,170	+		DZA65_RS16195	0.56	+0.2
3,514,171	-		DZA65_RS16195	0.56	+0.7
3,514,171	-		DZA65_RS16195	0.56	+0.3
3,514,171	-		DZA65_RS16195	0.56	-0.1
3,514,171	-		DZA65_RS16195	0.56	-0.7
3,514,171	-		DZA65_RS16195	0.56	+0.4
3,514,171	-		DZA65_RS16195	0.56	+1.7
3,514,171	-		DZA65_RS16195	0.56	-0.3
3,514,171	-		DZA65_RS16195	0.56	+0.3
3,514,203	+		DZA65_RS16195	0.58	+0.7
3,514,203	+		DZA65_RS16195	0.58	-0.7
3,514,203	+		DZA65_RS16195	0.58	+0.5
3,514,203	+		DZA65_RS16195	0.58	+0.6
3,514,203	+		DZA65_RS16195	0.58	+0.3
3,514,203	+		DZA65_RS16195	0.58	-1.8
3,514,203	+		DZA65_RS16195	0.58	+0.5
3,514,203	+		DZA65_RS16195	0.58	-0.6
3,514,203	+		DZA65_RS16195	0.58	-0.5
3,514,203	+		DZA65_RS16195	0.58	+0.1
3,514,203	+		DZA65_RS16195	0.58	-0.4
3,514,203	+		DZA65_RS16195	0.58	+0.5
3,514,203	+		DZA65_RS16195	0.58	+0.0
3,514,204	-		DZA65_RS16195	0.58	-0.5
3,514,204	-		DZA65_RS16195	0.58	-1.1
3,514,204	-		DZA65_RS16195	0.58	-1.8
3,514,204	-		DZA65_RS16195	0.58	-0.2
3,514,204	-		DZA65_RS16195	0.58	-0.3
3,514,204	-		DZA65_RS16195	0.58	-0.6
3,514,204	-		DZA65_RS16195	0.58	+1.7
3,514,204	-		DZA65_RS16195	0.58	+0.8
3,514,204	-		DZA65_RS16195	0.58	-0.6
3,514,204	-		DZA65_RS16195	0.58	+0.1
3,514,204	-		DZA65_RS16195	0.58	-0.2
3,514,305	+				+1.3
3,514,305	+		DZA65_RS16195	0.65	-0.3
3,514,305	+		DZA65_RS16195	0.65	-1.8
3,514,305	+		DZA65_RS16195	0.65	-0.3
3,514,305	+		DZA65_RS16195	0.65	+0.5
3,514,306	-		DZA65_RS16195	0.65	-1.1
3,514,306	-		DZA65_RS16195	0.65	-0.8
3,514,306	-		DZA65_RS16195	0.65	-0.1
3,514,309	-		DZA65_RS16195	0.66	-0.1
3,514,309	-		DZA65_RS16195	0.66	-0.2
3,514,309	-		DZA65_RS16195	0.66	-1.5
3,514,309	-		DZA65_RS16195	0.66	+0.2
3,514,309	-		DZA65_RS16195	0.66	-0.7
3,514,330	+		DZA65_RS16195	0.67	-1.7
3,514,330	+		DZA65_RS16195	0.67	+0.1
3,514,331	-		DZA65_RS16195	0.67	-0.3
3,514,331	-		DZA65_RS16195	0.67	+2.1
3,514,331	-		DZA65_RS16195	0.67	+0.7
3,514,331	-		DZA65_RS16195	0.67	+0.2
3,514,331	-		DZA65_RS16195	0.67	+0.5
3,514,333	-		DZA65_RS16195	0.67	-0.5
3,514,458	+		DZA65_RS16195	0.76	+0.6
3,514,467	+		DZA65_RS16195	0.77	+0.6
3,514,467	+		DZA65_RS16195	0.77	+0.1
3,514,467	+		DZA65_RS16195	0.77	-0.4
3,514,467	+		DZA65_RS16195	0.77	+0.6
3,514,468	-		DZA65_RS16195	0.77	-0.1
3,514,473	+		DZA65_RS16195	0.78	+1.6
3,514,689	+				+0.4
3,514,689	+				+1.7
3,514,689	+				+0.6
3,514,689	+				+2.0
3,514,690	-				-1.2
3,514,690	-				+0.7
3,514,690	-				-0.8
3,514,722	+				-0.3
3,514,723	-				-2.1
3,514,740	-				+1.1
3,514,764	-				+1.3
3,514,848	+				+1.1
3,514,848	+				-0.4
3,514,859	+				-0.8
3,514,859	+				-0.4
3,514,859	+				-1.4
3,514,859	+				+0.6
3,514,859	+				+2.1
3,514,859	+				+3.0
3,514,859	+				-0.3
3,514,859	+				+1.9
3,514,859	+				-1.8
3,514,860	-				+0.0
3,514,864	+				-1.3
3,514,898	+				-0.1
3,514,898	+				-1.4
3,514,898	+				+1.1
3,514,899	-				+0.3
3,514,899	-				+1.1
3,514,899	-				+0.5
3,514,899	-				+1.2
3,514,902	+				-0.3
3,514,902	+				+0.0
3,514,902	+				+0.3
3,514,902	+				-1.3
3,514,902	+				-0.5
3,514,902	+				-0.1
3,514,902	+				-0.5
3,514,902	+				+0.0
3,514,902	+				+1.3
3,514,903	-				-0.7
3,514,903	-				-1.8
3,514,903	-				-0.8
3,514,903	-				-1.8
3,514,903	-				-2.4
3,514,907	+				-0.5
3,514,907	+				+0.2
3,514,908	-				-0.2
3,514,910	+				-0.3
3,514,910	+				+0.6
3,514,911	-				-0.3
3,514,911	-				+0.5
3,514,911	-				-2.3
3,515,000	+				+0.6
3,515,000	+				+0.2
3,515,000	+				+0.7
3,515,001	-				-0.9
3,515,001	-				-1.1
3,515,036	+		DZA65_RS16200	0.17	-0.4
3,515,036	+		DZA65_RS16200	0.17	+1.2
3,515,037	-		DZA65_RS16200	0.17	-0.5
3,515,037	-		DZA65_RS16200	0.17	-0.3
3,515,037	-		DZA65_RS16200	0.17	+0.7
3,515,040	+		DZA65_RS16200	0.18	+0.2
3,515,040	+		DZA65_RS16200	0.18	-0.3
3,515,041	-		DZA65_RS16200	0.18	-0.5
3,515,041	-		DZA65_RS16200	0.18	-1.6
3,515,041	-		DZA65_RS16200	0.18	+0.5
3,515,041	-		DZA65_RS16200	0.18	-0.1
3,515,041	-		DZA65_RS16200	0.18	-1.0
3,515,041	-		DZA65_RS16200	0.18	-0.8
3,515,041	-		DZA65_RS16200	0.18	-0.4
3,515,041	-		DZA65_RS16200	0.18	-0.3
3,515,046	+		DZA65_RS16200	0.20	-0.5
3,515,062	-		DZA65_RS16200	0.24	-0.7
3,515,062	-		DZA65_RS16200	0.24	-0.4
3,515,062	-		DZA65_RS16200	0.24	+0.1
3,515,068	+		DZA65_RS16200	0.25	-2.4
3,515,068	+		DZA65_RS16200	0.25	-1.0
3,515,068	+		DZA65_RS16200	0.25	-1.3
3,515,068	+		DZA65_RS16200	0.25	-1.0
3,515,068	+		DZA65_RS16200	0.25	-0.8
3,515,069	-		DZA65_RS16200	0.25	-0.3
3,515,069	-		DZA65_RS16200	0.25	+0.5
3,515,069	-		DZA65_RS16200	0.25	-0.8
3,515,069	-		DZA65_RS16200	0.25	-0.3
3,515,105	+		DZA65_RS16200	0.34	-0.6
3,515,105	+		DZA65_RS16200	0.34	-1.3
3,515,106	-		DZA65_RS16200	0.34	-0.1
3,515,106	-		DZA65_RS16200	0.34	-0.3
3,515,106	-		DZA65_RS16200	0.34	+0.2
3,515,115	-		DZA65_RS16200	0.37	+0.7
3,515,115	-		DZA65_RS16200	0.37	-1.8
3,515,115	-		DZA65_RS16200	0.37	-1.8
3,515,147	+		DZA65_RS16200	0.44	-0.1
3,515,148	-		DZA65_RS16200	0.45	-0.2
3,515,186	+		DZA65_RS16200	0.54	-0.1
3,515,213	+		DZA65_RS16200	0.61	-0.8
3,515,213	+		DZA65_RS16200	0.61	+0.4
3,515,213	+		DZA65_RS16200	0.61	-0.5
3,515,213	+		DZA65_RS16200	0.61	-0.7
3,515,213	+		DZA65_RS16200	0.61	-1.4
3,515,213	+		DZA65_RS16200	0.61	+0.5
3,515,214	-		DZA65_RS16200	0.61	+1.3
3,515,214	-		DZA65_RS16200	0.61	-0.1
3,515,214	-		DZA65_RS16200	0.61	+0.4
3,515,214	-		DZA65_RS16200	0.61	-1.8
3,515,214	-		DZA65_RS16200	0.61	-1.6
3,515,214	-		DZA65_RS16200	0.61	-2.4
3,515,323	+		DZA65_RS16200	0.88	+1.0
3,515,324	-		DZA65_RS16200	0.88	+0.0
3,515,340	+				-1.3
3,515,533	+				+0.7
3,515,540	+				-1.8
3,515,540	+				-0.4
3,515,541	-				+0.9
3,515,541	-				-0.4
3,515,561	+				-0.2
3,515,562	-				+0.7
3,515,602	+				+0.1
3,515,602	+				+0.2
3,515,730	+		DZA65_RS16205	0.25	-1.4
3,515,730	+		DZA65_RS16205	0.25	+0.7
3,515,731	-		DZA65_RS16205	0.25	+1.0
3,515,731	-		DZA65_RS16205	0.25	-0.4
3,515,731	-		DZA65_RS16205	0.25	+0.2
3,515,815	-		DZA65_RS16205	0.44	-2.6
3,515,854	-		DZA65_RS16205	0.52	+0.7
3,515,868	+		DZA65_RS16205	0.55	+0.2
3,515,868	+		DZA65_RS16205	0.55	+0.5
3,515,868	+		DZA65_RS16205	0.55	+0.2
3,515,868	+		DZA65_RS16205	0.55	-0.5
3,515,868	+		DZA65_RS16205	0.55	+1.7
3,515,868	+		DZA65_RS16205	0.55	-0.8
3,515,869	-		DZA65_RS16205	0.55	+0.9
3,515,869	-		DZA65_RS16205	0.55	-0.3
3,515,869	-		DZA65_RS16205	0.55	-0.0
3,515,869	-		DZA65_RS16205	0.55	-0.6
3,515,869	-		DZA65_RS16205	0.55	+0.7
3,515,873	+		DZA65_RS16205	0.56	-3.3
3,515,873	+		DZA65_RS16205	0.56	+0.5
3,515,873	+		DZA65_RS16205	0.56	-1.6
3,515,873	+		DZA65_RS16205	0.56	+0.7
3,515,873	+		DZA65_RS16205	0.56	-1.3
3,515,873	+		DZA65_RS16205	0.56	-0.8
3,515,874	-		DZA65_RS16205	0.56	-1.6
3,515,874	-		DZA65_RS16205	0.56	-0.1
3,515,874	-		DZA65_RS16205	0.56	+0.0
3,515,874	-		DZA65_RS16205	0.56	+1.7
3,515,874	-		DZA65_RS16205	0.56	+0.2
3,515,874	-		DZA65_RS16205	0.56	-0.6
3,515,874	-		DZA65_RS16205	0.56	+0.0
3,515,874	-		DZA65_RS16205	0.56	+3.0
3,516,008	+		DZA65_RS16205	0.85	+0.0
3,516,008	+		DZA65_RS16205	0.85	+0.7
3,516,008	+		DZA65_RS16205	0.85	+0.1
3,516,143	-				+0.6
3,516,143	-				+1.1
3,516,178	+				+0.1
3,516,345	-				-0.5
3,516,360	-				+0.4
3,516,360	-				-1.3