Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16120

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,488,877	+		DZA65_RS16110	0.54	-0.9
3,488,877	+		DZA65_RS16110	0.54	-0.2
3,488,877	+		DZA65_RS16110	0.54	+0.2
3,488,982	+		DZA65_RS16110	0.70	-0.5
3,488,982	+		DZA65_RS16110	0.70	+0.3
3,488,983	-		DZA65_RS16110	0.71	-0.8
3,488,983	-		DZA65_RS16110	0.71	+0.3
3,489,068	+		DZA65_RS16110	0.84	+1.2
3,489,068	+		DZA65_RS16110	0.84	-0.4
3,489,068	+		DZA65_RS16110	0.84	-0.3
3,489,100	-		DZA65_RS16110	0.89	+0.2
3,489,171	+				+1.3
3,489,172	-				-0.8
3,489,175	+				+0.8
3,489,175	+				+0.5
3,489,175	+				+0.5
3,489,175	+				-0.3
3,489,278	+				+0.1
3,489,279	-				+0.3
3,489,279	-				+1.0
3,489,279	-				-0.6
3,489,279	-				+1.3
3,489,280	+				+0.4
3,489,280	+				+0.3
3,489,280	+				-1.1
3,489,280	+				-0.4
3,489,280	+				-0.1
3,489,280	+				-0.0
3,489,280	+				-0.7
3,489,280	+				+0.5
3,489,280	+				-0.8
3,489,280	+				-0.3
3,489,280	+				-0.8
3,489,281	-				-0.3
3,489,281	-				+0.6
3,489,281	-				-2.1
3,489,281	-				+2.2
3,489,281	-				-1.4
3,489,281	-				+1.2
3,489,307	+				+0.7
3,489,307	+				-0.1
3,489,308	-				-0.8
3,489,308	-				-0.8
3,489,308	-				-0.2
3,489,333	+				+1.2
3,489,334	-				-0.8
3,489,366	+		DZA65_RS16115	0.14	-1.8
3,489,366	+		DZA65_RS16115	0.14	-0.8
3,489,425	+		DZA65_RS16115	0.27	+0.2
3,489,425	+		DZA65_RS16115	0.27	-0.3
3,489,425	+		DZA65_RS16115	0.27	+0.0
3,489,425	+		DZA65_RS16115	0.27	-1.9
3,489,425	+		DZA65_RS16115	0.27	-0.1
3,489,425	+		DZA65_RS16115	0.27	-0.1
3,489,425	+		DZA65_RS16115	0.27	-0.2
3,489,425	+		DZA65_RS16115	0.27	-1.0
3,489,425	+		DZA65_RS16115	0.27	+0.6
3,489,425	+		DZA65_RS16115	0.27	-0.3
3,489,426	-		DZA65_RS16115	0.27	-0.3
3,489,426	-		DZA65_RS16115	0.27	+0.1
3,489,426	-		DZA65_RS16115	0.27	+1.6
3,489,426	-		DZA65_RS16115	0.27	-0.3
3,489,426	-		DZA65_RS16115	0.27	-0.6
3,489,426	-		DZA65_RS16115	0.27	+0.7
3,489,426	-		DZA65_RS16115	0.27	-1.6
3,489,426	-		DZA65_RS16115	0.27	-0.3
3,489,426	-		DZA65_RS16115	0.27	+1.2
3,489,427	+		DZA65_RS16115	0.27	+1.9
3,489,427	+		DZA65_RS16115	0.27	-0.2
3,489,427	+		DZA65_RS16115	0.27	-0.6
3,489,427	+		DZA65_RS16115	0.27	-0.6
3,489,427	+		DZA65_RS16115	0.27	-1.0
3,489,428	-		DZA65_RS16115	0.28	-0.3
3,489,428	-		DZA65_RS16115	0.28	-1.7
3,489,428	-		DZA65_RS16115	0.28	+0.7
3,489,428	-		DZA65_RS16115	0.28	-0.3
3,489,428	-		DZA65_RS16115	0.28	+0.2
3,489,491	+		DZA65_RS16115	0.41	-0.6
3,489,491	+		DZA65_RS16115	0.41	+0.1
3,489,491	+		DZA65_RS16115	0.41	+0.1
3,489,491	+		DZA65_RS16115	0.41	+0.7
3,489,491	+		DZA65_RS16115	0.41	+1.0
3,489,491	+		DZA65_RS16115	0.41	-1.7
3,489,491	+		DZA65_RS16115	0.41	+0.3
3,489,491	+		DZA65_RS16115	0.41	-1.3
3,489,491	+		DZA65_RS16115	0.41	-0.5
3,489,491	+		DZA65_RS16115	0.41	+0.2
3,489,491	+		DZA65_RS16115	0.41	+0.9
3,489,491	+		DZA65_RS16115	0.41	-0.4
3,489,491	+		DZA65_RS16115	0.41	-1.0
3,489,491	+		DZA65_RS16115	0.41	-0.6
3,489,491	+		DZA65_RS16115	0.41	-0.5
3,489,491	+		DZA65_RS16115	0.41	+0.5
3,489,491	+		DZA65_RS16115	0.41	-1.6
3,489,491	+		DZA65_RS16115	0.41	-0.7
3,489,491	+		DZA65_RS16115	0.41	-0.1
3,489,491	+		DZA65_RS16115	0.41	+1.0
3,489,492	-		DZA65_RS16115	0.42	-0.5
3,489,492	-		DZA65_RS16115	0.42	-0.4
3,489,492	-		DZA65_RS16115	0.42	-0.9
3,489,492	-		DZA65_RS16115	0.42	+1.9
3,489,492	-		DZA65_RS16115	0.42	+0.5
3,489,492	-		DZA65_RS16115	0.42	+0.2
3,489,492	-		DZA65_RS16115	0.42	-0.8
3,489,492	-		DZA65_RS16115	0.42	-0.3
3,489,492	-		DZA65_RS16115	0.42	-1.0
3,489,492	-		DZA65_RS16115	0.42	+0.7
3,489,492	-		DZA65_RS16115	0.42	+0.5
3,489,492	-		DZA65_RS16115	0.42	-0.6
3,489,681	+		DZA65_RS16115	0.83	-1.3
3,489,682	-		DZA65_RS16115	0.83	+0.3
3,489,736	+				+0.7
3,489,736	+				-0.8
3,489,737	-				+2.0
3,489,737	-				-0.5
3,489,758	-				+1.1
3,489,824	+				+0.5
3,489,824	+				+0.3
3,489,824	+				+0.2
3,489,824	+				-1.1
3,489,824	+				-0.1
3,489,824	+				+0.3
3,489,824	+				-2.6
3,489,824	+				-0.0
3,489,824	+				-0.5
3,489,825	-				+0.5
3,489,825	-				-2.1
3,489,825	-				+0.3
3,489,825	-				-0.8
3,489,825	-				-0.7
3,489,825	-				+1.7
3,489,825	-				-0.8
3,489,825	-				-0.5
3,489,910	+				-0.8
3,489,911	-				-0.5
3,489,952	+				-2.3
3,489,952	+				-1.3
3,489,952	+				-0.8
3,489,952	+				+0.5
3,489,952	+				-0.7
3,489,953	-				+0.2
3,489,953	-				-2.8
3,489,953	-				-0.3
3,489,953	-				-1.3
3,490,081	+		DZA65_RS16120	0.12	-1.0
3,490,081	+		DZA65_RS16120	0.12	-1.6
3,490,100	+		DZA65_RS16120	0.13	+0.2
3,490,112	+		DZA65_RS16120	0.14	+0.2
3,490,112	+		DZA65_RS16120	0.14	-1.6
3,490,112	+		DZA65_RS16120	0.14	-0.3
3,490,113	-		DZA65_RS16120	0.14	+0.1
3,490,131	+		DZA65_RS16120	0.14	-1.4
3,490,131	+		DZA65_RS16120	0.14	+1.7
3,490,132	-		DZA65_RS16120	0.14	-0.6
3,490,132	-		DZA65_RS16120	0.14	-1.6
3,490,226	-		DZA65_RS16120	0.19	-0.3
3,490,387	+		DZA65_RS16120	0.27	+0.5
3,490,445	+		DZA65_RS16120	0.30	+0.3
3,490,474	+				+1.3
3,490,475	-		DZA65_RS16120	0.31	-0.1
3,490,592	+		DZA65_RS16120	0.37	-0.6
3,490,592	+		DZA65_RS16120	0.37	-1.3
3,490,593	-		DZA65_RS16120	0.37	+0.0
3,491,343	+		DZA65_RS16120	0.73	-3.7
3,491,425	+		DZA65_RS16120	0.77	+0.2
3,491,425	+		DZA65_RS16120	0.77	-1.3
3,491,426	-		DZA65_RS16120	0.77	-1.4
3,491,426	-		DZA65_RS16120	0.77	+1.5
3,491,426	-		DZA65_RS16120	0.77	-1.3
3,491,426	-		DZA65_RS16120	0.77	+1.3
3,491,426	-		DZA65_RS16120	0.77	+0.0
3,491,568	-		DZA65_RS16120	0.84	+1.7
3,491,586	+		DZA65_RS16120	0.85	-1.1
3,491,586	+		DZA65_RS16120	0.85	-0.5
3,491,586	+		DZA65_RS16120	0.85	-1.3
3,491,586	+		DZA65_RS16120	0.85	-2.3
3,491,586	+		DZA65_RS16120	0.85	-0.4
3,491,587	-		DZA65_RS16120	0.85	-0.8
3,491,786	-				-0.3
3,491,786	-				-0.4
3,491,786	-				-2.3
3,491,786	-				-2.8
3,491,842	+				-0.8
3,491,843	-				+0.7
3,491,930	+				-0.3
3,491,931	-				-0.3
3,491,931	-				-0.5
3,491,931	-				+0.5
3,491,931	-				+1.2
3,491,935	+				-0.5
3,491,935	+				+0.0
3,491,936	-				+0.6
3,491,936	-				+0.4
3,491,993	+				+0.0
3,491,993	+				+0.3
3,491,993	+				-1.6
3,491,994	-				+0.9
3,491,994	-				-0.4
3,492,001	+				-0.7
3,492,035	+				-0.7
3,492,041	+				-0.1
3,492,042	-				+1.1
3,492,056	-				-0.8
3,492,096	-		DZA65_RS16125	0.11	+0.5
3,492,140	-		DZA65_RS16125	0.21	-0.6
3,492,140	-		DZA65_RS16125	0.21	+0.5
3,492,143	+		DZA65_RS16125	0.22	+0.7
3,492,143	+		DZA65_RS16125	0.22	+0.1
3,492,143	+		DZA65_RS16125	0.22	+0.9
3,492,143	+		DZA65_RS16125	0.22	+1.4
3,492,144	-		DZA65_RS16125	0.22	-0.1
3,492,144	-		DZA65_RS16125	0.22	-0.4
3,492,144	-		DZA65_RS16125	0.22	+0.4
3,492,175	+		DZA65_RS16125	0.29	+3.0
3,492,176	-		DZA65_RS16125	0.29	+0.1
3,492,356	+		DZA65_RS16125	0.70	-1.8
3,492,356	+		DZA65_RS16125	0.70	+2.1
3,492,356	+		DZA65_RS16125	0.70	+0.2
3,492,357	-		DZA65_RS16125	0.70	+0.9
3,492,357	-		DZA65_RS16125	0.70	-0.8
3,492,549	+				+0.8
3,492,549	+				+0.0
3,492,549	+				-0.6
3,492,549	+				+0.3
3,492,550	-				+0.4
3,492,567	+				+2.2
3,492,567	+				+0.3
3,492,567	+				-0.1
3,492,567	+				-0.1
3,492,567	+				-0.8
3,492,567	+				-0.8
3,492,567	+				+0.0
3,492,568	-				+0.3
3,492,568	-				-0.8
3,492,568	-				-2.3
3,492,714	-				+1.3
3,492,721	+				+0.1
3,492,721	+				+0.7
3,492,721	+				+0.5
3,492,721	+				-0.6
3,492,721	+				+0.3
3,492,722	-				+1.3
3,492,725	+				-0.5
3,492,725	+				+0.5
3,492,726	-				+1.5
3,492,726	-				+0.3
3,492,759	-		DZA65_RS16130	0.11	-1.3
3,492,759	-		DZA65_RS16130	0.11	+1.5
3,492,787	+		DZA65_RS16130	0.13	-0.4
3,492,787	+		DZA65_RS16130	0.13	-1.6
3,492,791	+				+0.7
3,492,792	-		DZA65_RS16130	0.13	+0.9
3,492,792	-		DZA65_RS16130	0.13	+0.4
3,492,824	+		DZA65_RS16130	0.14	-0.5
3,492,824	+		DZA65_RS16130	0.14	-1.3
3,492,852	+		DZA65_RS16130	0.16	+0.4
3,492,852	+		DZA65_RS16130	0.16	-0.1
3,492,857	+		DZA65_RS16130	0.16	-0.0
3,492,858	-		DZA65_RS16130	0.16	+0.7
3,492,858	-		DZA65_RS16130	0.16	-0.5
3,492,858	-		DZA65_RS16130	0.16	+0.2
3,492,858	-		DZA65_RS16130	0.16	-2.4
3,492,861	-		DZA65_RS16130	0.16	+0.9
3,492,861	-		DZA65_RS16130	0.16	+0.9
3,492,861	-		DZA65_RS16130	0.16	-0.1
3,492,891	+		DZA65_RS16130	0.17	+0.2
3,492,891	+		DZA65_RS16130	0.17	-0.8
3,492,891	+		DZA65_RS16130	0.17	-0.8
3,492,891	+		DZA65_RS16130	0.17	-0.3
3,492,891	+		DZA65_RS16130	0.17	-0.3
3,492,891	+		DZA65_RS16130	0.17	-0.6
3,492,891	+		DZA65_RS16130	0.17	-0.3
3,492,891	+		DZA65_RS16130	0.17	-1.1
3,492,891	+		DZA65_RS16130	0.17	+1.0
3,492,891	+		DZA65_RS16130	0.17	-0.8
3,492,891	+		DZA65_RS16130	0.17	-0.3
3,492,891	+		DZA65_RS16130	0.17	-0.1
3,492,891	+		DZA65_RS16130	0.17	-0.1