Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15695

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,408,225	+				-0.7
3,408,225	+				+1.4
3,408,225	+				-0.0
3,408,226	-				+1.4
3,408,226	-				-0.7
3,408,262	+				+3.5
3,408,263	-				+0.1
3,408,292	+				+0.0
3,408,292	+				-0.7
3,408,293	-				+0.3
3,408,293	-				-1.1
3,408,336	+				+0.2
3,408,337	-				+0.4
3,408,348	+				-0.3
3,408,349	-				+1.4
3,408,349	-				-1.0
3,408,351	+				-0.3
3,408,351	+				+1.1
3,408,351	+				-0.9
3,408,351	+				-1.1
3,408,351	+				-1.1
3,408,351	+				+0.2
3,408,351	+				-1.2
3,408,351	+				-0.7
3,408,352	-				-1.8
3,408,352	-				+5.0
3,408,352	-				-0.5
3,408,352	-				-0.5
3,408,352	-				-2.0
3,408,352	-				+0.2
3,408,352	-				-1.3
3,408,353	+				+0.8
3,408,353	+				+1.0
3,408,353	+				+0.3
3,408,353	+				+0.9
3,408,353	+				-0.6
3,408,354	-				-0.1
3,408,354	-				+0.3
3,408,354	-				-1.9
3,408,354	-				-1.0
3,408,354	-				-0.8
3,408,405	+				-0.8
3,408,406	-				-0.5
3,408,486	+				+1.2
3,408,486	+				+0.7
3,408,487	-				-0.8
3,408,487	-				+0.1
3,408,487	-				-0.3
3,408,496	+				-0.0
3,408,496	+				-2.6
3,408,496	+				+1.9
3,408,497	-				+0.7
3,408,497	-				-2.7
3,408,497	-				-0.8
3,408,497	-				-2.3
3,408,498	+				-0.0
3,408,498	+				-0.1
3,408,498	+				+0.1
3,408,498	+				+0.5
3,408,498	+				+0.1
3,408,499	-				+3.9
3,408,499	-				+1.7
3,408,499	-				+1.4
3,408,499	-				+1.4
3,408,499	-				+0.3
3,408,504	-				-0.0
3,408,531	-				-1.1
3,408,558	+				+0.9
3,408,562	+				+0.9
3,408,563	-				+1.5
3,408,563	-				+2.6
3,408,563	-				-0.6
3,408,563	-				+0.1
3,408,577	+				+0.7
3,408,578	-				-0.4
3,408,607	+				+1.8
3,408,608	-				+0.0
3,408,608	-				-0.5
3,408,618	+				+0.3
3,408,619	-				-0.5
3,408,619	-				-0.6
3,408,634	+				+0.7
3,408,637	+				-0.7
3,408,653	+				+0.1
3,408,653	+				-0.9
3,408,658	+				+0.1
3,408,658	+				-1.2
3,408,658	+				-2.0
3,408,658	+				+2.0
3,408,659	-				-0.1
3,408,659	-				+3.0
3,408,659	-				-2.0
3,408,659	-				-0.0
3,408,666	+				+0.7
3,408,667	-				-1.6
3,408,689	+				+0.7
3,408,690	-				-0.1
3,408,710	+				-0.6
3,408,710	+				+1.0
3,408,710	+				-1.9
3,408,730	+				-0.6
3,408,731	-				+1.4
3,408,737	+				+0.2
3,408,737	+				-0.4
3,408,737	+				+0.0
3,408,737	+				+0.4
3,408,738	-				+0.4
3,408,753	-				-0.2
3,408,783	+				-0.9
3,408,783	+				+0.7
3,408,783	+				-2.6
3,408,784	-				-0.9
3,408,784	-				-1.1
3,408,784	-				-0.3
3,408,784	-				-0.3
3,408,784	-				-0.8
3,408,794	-				-0.9
3,408,813	+				-0.5
3,408,813	+				+0.1
3,408,813	+				-0.3
3,408,813	+				-0.1
3,408,813	+				-1.0
3,408,814	-				-1.3
3,408,814	-				+0.3
3,408,814	-				+0.6
3,408,814	-				+1.1
3,408,814	-				-1.3
3,408,830	+				+0.1
3,408,831	-				+0.7
3,408,837	+				-0.5
3,408,837	+				+0.7
3,408,837	+				+0.7
3,408,838	-				+1.1
3,408,838	-				-2.6
3,408,838	-				+2.3
3,408,838	-				-0.1
3,408,838	-				-0.4
3,408,838	-				+0.8
3,408,838	-				+0.3
3,408,866	+				+0.1
3,408,867	-				-0.3
3,408,874	-				+0.5
3,408,874	-				-0.6
3,408,874	-				-1.6
3,408,874	-				-0.6
3,408,937	+				+0.2
3,408,999	-				+1.9
3,408,999	-				+0.3
3,408,999	-				+0.2
3,409,030	+				-1.0
3,409,031	-				-0.9
3,409,031	-				+0.2
3,409,031	-				+0.3
3,409,052	-				-1.1
3,409,106	-				-0.1
3,409,106	-				-0.2
3,409,106	-				-0.1
3,409,106	-				+2.3
3,409,106	-				-0.9
3,409,111	-				+0.7
3,409,111	-				-0.7
3,409,111	-				+0.1
3,409,111	-				+0.6
3,409,133	+				+0.3
3,409,133	+				+0.7
3,409,133	+				+0.2
3,409,133	+				+0.0
3,409,134	-				+0.4
3,409,134	-				-0.9
3,409,134	-				+0.2
3,409,135	+				-1.5
3,409,136	-				+1.2
3,409,136	-				-0.6
3,409,148	-				+0.1
3,409,151	-				+1.0
3,409,151	-				-0.9
3,409,213	+				-1.6
3,409,229	-		DZA65_RS15695	0.12	-1.5
3,409,443	+		DZA65_RS15695	0.46	+0.2
3,409,443	+		DZA65_RS15695	0.46	-1.9
3,409,443	+		DZA65_RS15695	0.46	+0.7
3,409,444	-		DZA65_RS15695	0.47	+0.0
3,409,444	-		DZA65_RS15695	0.47	-0.7
3,409,444	-		DZA65_RS15695	0.47	+0.0
3,409,444	-		DZA65_RS15695	0.47	-0.9
3,409,495	+		DZA65_RS15695	0.55	+0.1
3,409,495	+		DZA65_RS15695	0.55	-0.0
3,409,495	+		DZA65_RS15695	0.55	+0.9
3,409,496	-		DZA65_RS15695	0.55	-1.6
3,409,496	-		DZA65_RS15695	0.55	-0.8
3,409,496	-		DZA65_RS15695	0.55	-0.9
3,409,519	+		DZA65_RS15695	0.59	-0.3
3,409,520	-		DZA65_RS15695	0.59	-1.1
3,409,520	-		DZA65_RS15695	0.59	+0.4
3,409,520	-		DZA65_RS15695	0.59	-0.9
3,409,548	+		DZA65_RS15695	0.63	+0.2
3,409,548	+		DZA65_RS15695	0.63	+0.7
3,409,548	+		DZA65_RS15695	0.63	+0.1
3,409,548	+		DZA65_RS15695	0.63	+0.7
3,409,568	-		DZA65_RS15695	0.67	-1.1
3,409,623	+		DZA65_RS15695	0.76	-0.7
3,409,624	-		DZA65_RS15695	0.76	-1.6
3,409,624	-		DZA65_RS15695	0.76	-0.5
3,409,716	+				+0.5
3,409,716	+				-1.5
3,409,716	+				+0.4
3,409,854	+		DZA65_RS15700	0.12	+1.0
3,409,855	-		DZA65_RS15700	0.12	+0.6
3,409,907	+		DZA65_RS15700	0.25	-0.4
3,409,908	-		DZA65_RS15700	0.25	+1.5
3,409,940	+		DZA65_RS15700	0.33	+0.6
3,410,042	+		DZA65_RS15700	0.58	+0.1
3,410,042	+		DZA65_RS15700	0.58	+2.9
3,410,043	-		DZA65_RS15700	0.59	+1.2
3,410,043	-		DZA65_RS15700	0.59	-0.7
3,410,046	+		DZA65_RS15700	0.59	-2.5
3,410,046	+		DZA65_RS15700	0.59	+1.0
3,410,046	+		DZA65_RS15700	0.59	-1.0
3,410,046	+		DZA65_RS15700	0.59	+0.7
3,410,047	-		DZA65_RS15700	0.60	-0.9
3,410,047	-		DZA65_RS15700	0.60	-1.3
3,410,047	-		DZA65_RS15700	0.60	-1.5
3,410,106	+		DZA65_RS15700	0.74	-1.3
3,410,200	+				+1.0
3,410,200	+				-0.6
3,410,200	+				+0.4
3,410,200	+				-1.3
3,410,200	+				-0.9
3,410,201	-				-0.6
3,410,201	-				-2.1
3,410,201	-				+0.5
3,410,223	+				+0.3
3,410,224	-				-0.9
3,410,224	-				+0.2
3,410,224	-				+0.0
3,410,224	-				-1.0
3,410,230	+				-0.3
3,410,230	+				-0.0
3,410,230	+				+0.6
3,410,230	+				-2.8
3,410,231	-				-0.7
3,410,231	-				+0.3
3,410,231	-				+0.9
3,410,269	+				-1.1
3,410,365	+				-0.2
3,410,365	+				+1.4
3,410,365	+				-2.5
3,410,365	+				-0.3
3,410,365	+				+3.0
3,410,366	-				-0.3
3,410,366	-				+0.1
3,410,418	-				-1.4
3,410,480	+				-0.0
3,410,575	+		DZA65_RS15705	0.17	-0.7
3,410,575	+		DZA65_RS15705	0.17	+1.3
3,410,576	-		DZA65_RS15705	0.17	-1.5
3,410,602	+		DZA65_RS15705	0.19	+2.3
3,410,602	+		DZA65_RS15705	0.19	-0.3
3,410,602	+		DZA65_RS15705	0.19	-0.3
3,410,602	+		DZA65_RS15705	0.19	+0.2
3,410,602	+		DZA65_RS15705	0.19	+1.1
3,410,602	+		DZA65_RS15705	0.19	-1.3
3,410,602	+		DZA65_RS15705	0.19	-1.7
3,410,602	+		DZA65_RS15705	0.19	-1.9
3,410,602	+		DZA65_RS15705	0.19	-0.6
3,410,602	+		DZA65_RS15705	0.19	+0.2
3,410,602	+		DZA65_RS15705	0.19	-2.0
3,410,602	+		DZA65_RS15705	0.19	+1.6
3,410,602	+		DZA65_RS15705	0.19	+0.7
3,410,602	+		DZA65_RS15705	0.19	-1.0
3,410,602	+		DZA65_RS15705	0.19	-1.5
3,410,602	+		DZA65_RS15705	0.19	+1.0
3,410,602	+		DZA65_RS15705	0.19	+1.5
3,410,602	+		DZA65_RS15705	0.19	-1.8
3,410,603	-		DZA65_RS15705	0.20	-1.2
3,410,603	-		DZA65_RS15705	0.20	-1.0
3,410,603	-		DZA65_RS15705	0.20	-0.7
3,410,603	-		DZA65_RS15705	0.20	+1.0
3,410,603	-		DZA65_RS15705	0.20	-0.0
3,410,603	-		DZA65_RS15705	0.20	+0.7
3,410,603	-		DZA65_RS15705	0.20	-0.3
3,410,603	-		DZA65_RS15705	0.20	-1.9
3,410,603	-		DZA65_RS15705	0.20	+0.6
3,410,603	-		DZA65_RS15705	0.20	-0.6
3,410,603	-		DZA65_RS15705	0.20	+0.7
3,410,603	-		DZA65_RS15705	0.20	+0.2
3,410,603	-		DZA65_RS15705	0.20	+0.6
3,410,603	-		DZA65_RS15705	0.20	-2.1
3,410,603	-		DZA65_RS15705	0.20	-0.7
3,410,661	+		DZA65_RS15705	0.24	-0.7
3,410,662	-		DZA65_RS15705	0.24	-0.1
3,410,662	-		DZA65_RS15705	0.24	+0.3
3,410,662	-		DZA65_RS15705	0.24	-1.6
3,410,666	+		DZA65_RS15705	0.25	-0.7
3,410,666	+		DZA65_RS15705	0.25	-0.6
3,410,666	+		DZA65_RS15705	0.25	+0.2
3,410,667	-		DZA65_RS15705	0.25	+0.1
3,410,764	+		DZA65_RS15705	0.33	+0.3
3,410,765	-		DZA65_RS15705	0.33	+0.2
3,410,765	-		DZA65_RS15705	0.33	+0.8