Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15685

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,406,183	+		DZA65_RS15680	0.55	-0.7
3,406,183	+		DZA65_RS15680	0.55	+1.3
3,406,183	+		DZA65_RS15680	0.55	-0.7
3,406,183	+		DZA65_RS15680	0.55	+0.7
3,406,183	+		DZA65_RS15680	0.55	+0.5
3,406,183	+		DZA65_RS15680	0.55	-1.6
3,406,183	+		DZA65_RS15680	0.55	+0.6
3,406,183	+		DZA65_RS15680	0.55	+0.7
3,406,184	-		DZA65_RS15680	0.55	+0.4
3,406,184	-		DZA65_RS15680	0.55	+0.1
3,406,184	-		DZA65_RS15680	0.55	+0.7
3,406,184	-		DZA65_RS15680	0.55	+1.1
3,406,184	-		DZA65_RS15680	0.55	+0.7
3,406,184	-		DZA65_RS15680	0.55	+1.0
3,406,318	-		DZA65_RS15680	0.61	+0.5
3,406,318	-		DZA65_RS15680	0.61	-0.0
3,406,326	+		DZA65_RS15680	0.62	-0.5
3,406,326	+		DZA65_RS15680	0.62	-0.0
3,406,326	+		DZA65_RS15680	0.62	-1.2
3,406,326	+		DZA65_RS15680	0.62	+0.4
3,406,326	+		DZA65_RS15680	0.62	-0.1
3,406,327	-		DZA65_RS15680	0.62	+0.7
3,406,327	-		DZA65_RS15680	0.62	-1.6
3,406,327	-		DZA65_RS15680	0.62	+0.8
3,406,327	-		DZA65_RS15680	0.62	-0.3
3,406,327	-		DZA65_RS15680	0.62	-0.3
3,406,327	-		DZA65_RS15680	0.62	-0.0
3,406,327	-		DZA65_RS15680	0.62	-2.1
3,406,330	+		DZA65_RS15680	0.62	+1.2
3,406,330	+		DZA65_RS15680	0.62	-1.2
3,406,330	+		DZA65_RS15680	0.62	-1.1
3,406,331	-		DZA65_RS15680	0.62	+0.5
3,406,331	-		DZA65_RS15680	0.62	+0.3
3,406,331	-		DZA65_RS15680	0.62	-1.4
3,406,436	-		DZA65_RS15680	0.67	+0.2
3,406,436	-		DZA65_RS15680	0.67	-0.4
3,406,436	-		DZA65_RS15680	0.67	+0.3
3,406,542	+		DZA65_RS15680	0.72	+0.3
3,406,543	-		DZA65_RS15680	0.72	-2.8
3,406,543	-		DZA65_RS15680	0.72	+0.4
3,406,543	-		DZA65_RS15680	0.72	-0.4
3,406,543	-		DZA65_RS15680	0.72	-1.1
3,406,591	+		DZA65_RS15680	0.74	+1.0
3,406,591	+		DZA65_RS15680	0.74	-0.4
3,406,591	+		DZA65_RS15680	0.74	-0.5
3,406,592	-		DZA65_RS15680	0.74	+0.7
3,406,662	+		DZA65_RS15680	0.78	-1.4
3,406,662	+		DZA65_RS15680	0.78	+0.1
3,406,662	+		DZA65_RS15680	0.78	-0.1
3,406,793	-		DZA65_RS15680	0.84	-1.6
3,406,796	-		DZA65_RS15680	0.84	-1.3
3,406,807	+		DZA65_RS15680	0.84	+0.7
3,406,807	+		DZA65_RS15680	0.84	-0.1
3,406,819	+		DZA65_RS15680	0.85	+0.2
3,406,820	-		DZA65_RS15680	0.85	+2.4
3,406,844	+		DZA65_RS15680	0.86	-0.5
3,406,844	+		DZA65_RS15680	0.86	-1.9
3,406,844	+		DZA65_RS15680	0.86	+0.4
3,406,845	-		DZA65_RS15680	0.86	+1.3
3,406,845	-		DZA65_RS15680	0.86	-0.3
3,406,847	+		DZA65_RS15680	0.86	-0.3
3,406,848	-		DZA65_RS15680	0.86	+0.2
3,406,881	+		DZA65_RS15680	0.88	-1.3
3,406,881	+		DZA65_RS15680	0.88	+0.0
3,406,881	+		DZA65_RS15680	0.88	+0.1
3,406,882	-		DZA65_RS15680	0.88	-1.3
3,406,882	-		DZA65_RS15680	0.88	+0.2
3,406,882	-		DZA65_RS15680	0.88	-0.1
3,406,911	+		DZA65_RS15680	0.89	+0.1
3,406,911	+		DZA65_RS15680	0.89	+1.3
3,406,912	-		DZA65_RS15680	0.89	+0.4
3,406,914	+		DZA65_RS15680	0.89	-0.7
3,406,915	-		DZA65_RS15680	0.89	-0.3
3,406,915	-		DZA65_RS15680	0.89	-0.7
3,406,915	-		DZA65_RS15680	0.89	-0.4
3,406,915	-		DZA65_RS15680	0.89	+1.6
3,406,915	-		DZA65_RS15680	0.89	-0.0
3,406,915	-		DZA65_RS15680	0.89	-1.9
3,406,938	+				+0.1
3,406,938	+				+1.2
3,406,938	+				-1.6
3,406,938	+				+0.7
3,406,939	-				-0.5
3,406,939	-				+0.3
3,406,939	-				-0.5
3,406,978	+				-1.4
3,407,074	-				-0.9
3,407,168	+				+0.2
3,407,170	+				-0.6
3,407,170	+				+0.1
3,407,170	+				+0.2
3,407,170	+				-0.1
3,407,170	+				-0.6
3,407,170	+				+0.1
3,407,170	+				-1.6
3,407,170	+				+0.3
3,407,170	+				+0.1
3,407,170	+				-0.9
3,407,170	+				+0.5
3,407,170	+				+0.7
3,407,171	-				+0.1
3,407,171	-				-0.9
3,407,171	-				-0.3
3,407,171	-				-1.6
3,407,171	-				-0.3
3,407,171	-				-1.1
3,407,171	-				-1.5
3,407,171	-				-1.8
3,407,171	-				-0.9
3,407,171	-				+0.3
3,407,171	-				+0.9
3,407,171	-				+0.2
3,407,171	-				+0.3
3,407,174	+				+0.9
3,407,175	-				-0.2
3,407,216	+				-0.3
3,407,216	+				+0.7
3,407,216	+				-1.1
3,407,217	-				+0.4
3,407,217	-				+0.8
3,407,217	-				+1.7
3,407,268	+		DZA65_RS15685	0.15	+0.1
3,407,268	+		DZA65_RS15685	0.15	+0.3
3,407,268	+		DZA65_RS15685	0.15	+1.4
3,407,269	-		DZA65_RS15685	0.15	+0.7
3,407,323	+		DZA65_RS15685	0.22	+1.4
3,407,323	+		DZA65_RS15685	0.22	-0.3
3,407,324	-		DZA65_RS15685	0.22	-1.0
3,407,404	+		DZA65_RS15685	0.32	-1.3
3,407,404	+		DZA65_RS15685	0.32	-0.3
3,407,404	+		DZA65_RS15685	0.32	+1.3
3,407,405	-		DZA65_RS15685	0.32	+1.4
3,407,405	-		DZA65_RS15685	0.32	+0.2
3,407,405	-		DZA65_RS15685	0.32	+1.3
3,407,494	+		DZA65_RS15685	0.43	-1.6
3,407,494	+		DZA65_RS15685	0.43	-0.1
3,407,495	-		DZA65_RS15685	0.43	+0.8
3,407,495	-		DZA65_RS15685	0.43	+0.7
3,407,495	-		DZA65_RS15685	0.43	+0.9
3,407,495	-		DZA65_RS15685	0.43	-0.5
3,407,495	-		DZA65_RS15685	0.43	-0.5
3,407,524	+		DZA65_RS15685	0.46	+1.0
3,407,572	+		DZA65_RS15685	0.52	-0.1
3,407,573	-		DZA65_RS15685	0.52	-0.7
3,407,627	+		DZA65_RS15685	0.59	-0.5
3,407,636	+		DZA65_RS15685	0.60	-1.4
3,407,636	+		DZA65_RS15685	0.60	-0.5
3,407,637	-		DZA65_RS15685	0.60	-0.4
3,407,705	+		DZA65_RS15685	0.68	-2.6
3,407,705	+		DZA65_RS15685	0.68	+0.7
3,407,706	-		DZA65_RS15685	0.68	+0.3
3,407,706	-		DZA65_RS15685	0.68	+0.4
3,407,706	-		DZA65_RS15685	0.68	+0.2
3,407,739	-		DZA65_RS15685	0.73	-1.2
3,407,768	+		DZA65_RS15685	0.76	-0.0
3,407,768	+		DZA65_RS15685	0.76	+1.4
3,407,768	+		DZA65_RS15685	0.76	-1.2
3,407,769	-		DZA65_RS15685	0.76	+0.7
3,407,769	-		DZA65_RS15685	0.76	+0.1
3,407,855	+		DZA65_RS15685	0.87	+0.7
3,407,855	+		DZA65_RS15685	0.87	-0.5
3,407,905	+				+0.7
3,407,905	+				-0.3
3,407,905	+				-0.1
3,407,938	-				+0.5
3,407,957	+				-0.6
3,407,958	-				+0.0
3,407,958	-				-1.6
3,407,958	-				-0.3
3,407,958	-				-0.9
3,407,974	+				+0.4
3,407,974	+				-1.5
3,407,980	+				-0.3
3,407,980	+				+0.2
3,407,980	+				+0.7
3,407,980	+				+0.2
3,407,980	+				-0.2
3,407,980	+				-1.6
3,407,980	+				-0.4
3,407,980	+				+0.4
3,407,980	+				-0.6
3,407,981	-				-0.7
3,407,981	-				-1.1
3,407,981	-				-0.5
3,407,981	-				+0.7
3,408,023	+				-0.3
3,408,032	+				-0.8
3,408,032	+				-0.7
3,408,033	-				-0.9
3,408,033	-				+0.1
3,408,033	-				-1.9
3,408,033	-				-0.2
3,408,033	-				-0.6
3,408,080	-				-0.1
3,408,087	+				-0.6
3,408,087	+				-0.3
3,408,087	+				+0.7
3,408,087	+				+0.7
3,408,088	-				+1.4
3,408,088	-				+0.2
3,408,088	-				-0.3
3,408,118	+				-0.7
3,408,120	+				-0.3
3,408,120	+				-1.0
3,408,120	+				-1.6
3,408,120	+				+1.3
3,408,120	+				+0.7
3,408,120	+				-1.9
3,408,121	-				-1.1
3,408,121	-				-1.0
3,408,121	-				+1.9
3,408,121	-				-0.9
3,408,121	-				-0.1
3,408,121	-				-1.2
3,408,121	-				-0.6
3,408,121	-				-1.0
3,408,121	-				-0.2
3,408,121	-				-0.3
3,408,121	-				+1.1
3,408,121	-				+1.1
3,408,121	-				+0.2
3,408,145	+				-1.0
3,408,146	-				+1.9
3,408,225	+				-0.7
3,408,225	+				+1.4
3,408,225	+				-0.0
3,408,226	-				+1.4
3,408,226	-				-0.7
3,408,262	+				+3.5
3,408,263	-				+0.1
3,408,292	+				+0.0
3,408,292	+				-0.7
3,408,293	-				+0.3
3,408,293	-				-1.1
3,408,336	+				+0.2
3,408,337	-				+0.4
3,408,348	+				-0.3
3,408,349	-				+1.4
3,408,349	-				-1.0
3,408,351	+				-0.3
3,408,351	+				+1.1
3,408,351	+				-0.9
3,408,351	+				-1.1
3,408,351	+				-1.1
3,408,351	+				+0.2
3,408,351	+				-1.2
3,408,351	+				-0.7
3,408,352	-				-1.8
3,408,352	-				+5.0
3,408,352	-				-0.5
3,408,352	-				-0.5
3,408,352	-				-2.0
3,408,352	-				+0.2
3,408,352	-				-1.3
3,408,353	+				+0.8
3,408,353	+				+1.0
3,408,353	+				+0.3
3,408,353	+				+0.9
3,408,353	+				-0.6
3,408,354	-				-0.1
3,408,354	-				+0.3
3,408,354	-				-1.9
3,408,354	-				-1.0
3,408,354	-				-0.8
3,408,405	+				-0.8
3,408,406	-				-0.5
3,408,486	+				+1.2
3,408,486	+				+0.7
3,408,487	-				-0.8
3,408,487	-				+0.1
3,408,487	-				-0.3
3,408,496	+				-0.0
3,408,496	+				-2.6
3,408,496	+				+1.9
3,408,497	-				+0.7
3,408,497	-				-2.7
3,408,497	-				-0.8
3,408,497	-				-2.3
3,408,498	+				-0.0
3,408,498	+				-0.1
3,408,498	+				+0.1
3,408,498	+				+0.5
3,408,498	+				+0.1
3,408,499	-				+3.9
3,408,499	-				+1.7
3,408,499	-				+1.4
3,408,499	-				+1.4
3,408,499	-				+0.3
3,408,504	-				-0.0
3,408,531	-				-1.1
3,408,558	+				+0.9
3,408,562	+				+0.9
3,408,563	-				+1.5
3,408,563	-				+2.6
3,408,563	-				-0.6
3,408,563	-				+0.1
3,408,577	+				+0.7
3,408,578	-				-0.4
3,408,607	+				+1.8
3,408,608	-				+0.0
3,408,608	-				-0.5
3,408,618	+				+0.3
3,408,619	-				-0.5
3,408,619	-				-0.6
3,408,634	+				+0.7
3,408,637	+				-0.7
3,408,653	+				+0.1
3,408,653	+				-0.9
3,408,658	+				+0.1
3,408,658	+				-1.2
3,408,658	+				-2.0
3,408,658	+				+2.0
3,408,659	-				-0.1
3,408,659	-				+3.0
3,408,659	-				-2.0
3,408,659	-				-0.0
3,408,666	+				+0.7
3,408,667	-				-1.6
3,408,689	+				+0.7
3,408,690	-				-0.1
3,408,710	+				-0.6
3,408,710	+				+1.0
3,408,710	+				-1.9
3,408,730	+				-0.6
3,408,731	-				+1.4
3,408,737	+				+0.2
3,408,737	+				-0.4
3,408,737	+				+0.0
3,408,737	+				+0.4
3,408,738	-				+0.4
3,408,753	-				-0.2
3,408,783	+				-0.9
3,408,783	+				+0.7
3,408,783	+				-2.6
3,408,784	-				-0.9
3,408,784	-				-1.1
3,408,784	-				-0.3
3,408,784	-				-0.3
3,408,784	-				-0.8
3,408,794	-				-0.9
3,408,813	+				-0.5
3,408,813	+				+0.1
3,408,813	+				-0.3
3,408,813	+				-0.1
3,408,813	+				-1.0
3,408,814	-				-1.3
3,408,814	-				+0.3
3,408,814	-				+0.6
3,408,814	-				+1.1
3,408,814	-				-1.3
3,408,830	+				+0.1
3,408,831	-				+0.7
3,408,837	+				-0.5
3,408,837	+				+0.7
3,408,837	+				+0.7
3,408,838	-				+1.1
3,408,838	-				-2.6
3,408,838	-				+2.3
3,408,838	-				-0.1
3,408,838	-				-0.4
3,408,838	-				+0.8
3,408,838	-				+0.3
3,408,866	+				+0.1
3,408,867	-				-0.3
3,408,874	-				+0.5
3,408,874	-				-0.6
3,408,874	-				-1.6
3,408,874	-				-0.6
3,408,937	+				+0.2