Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15515

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,362,044	+		DZA65_RS15510	0.72	+0.2
3,362,044	+		DZA65_RS15510	0.72	-0.3
3,362,044	+		DZA65_RS15510	0.72	-0.3
3,362,045	-		DZA65_RS15510	0.72	-0.3
3,362,045	-		DZA65_RS15510	0.72	+0.7
3,362,048	+		DZA65_RS15510	0.72	-0.6
3,362,049	-		DZA65_RS15510	0.72	+0.7
3,362,049	-		DZA65_RS15510	0.72	+1.1
3,362,049	-		DZA65_RS15510	0.72	+0.1
3,362,049	-		DZA65_RS15510	0.72	+1.0
3,362,091	-		DZA65_RS15510	0.75	-0.3
3,362,137	+		DZA65_RS15510	0.78	-0.1
3,362,137	+		DZA65_RS15510	0.78	-0.7
3,362,227	+		DZA65_RS15510	0.83	+1.8
3,362,227	+		DZA65_RS15510	0.83	+1.7
3,362,228	-		DZA65_RS15510	0.84	+0.2
3,362,228	-		DZA65_RS15510	0.84	+2.5
3,362,267	+		DZA65_RS15510	0.86	-0.5
3,362,343	+				-2.6
3,362,344	-				+0.5
3,362,344	-				+1.1
3,362,349	+				-1.6
3,362,349	+				+1.4
3,362,350	-				-0.6
3,362,354	-				+2.6
3,362,354	-				+1.7
3,362,354	-				-0.1
3,362,354	-				-0.6
3,362,354	-				-0.9
3,362,354	-				-1.2
3,362,354	-				+0.1
3,362,490	+				+1.4
3,362,490	+				-0.7
3,362,490	+				-0.6
3,362,490	+				-0.3
3,362,490	+				-0.6
3,362,490	+				-0.8
3,362,490	+				-0.1
3,362,490	+				-0.1
3,362,491	-				+1.3
3,362,491	-				-1.6
3,362,491	-				-0.9
3,362,491	-				-1.3
3,362,491	-				-1.2
3,362,491	-				+0.5
3,362,500	+				+0.8
3,362,500	+				+0.2
3,362,501	-				-1.3
3,362,501	-				+1.7
3,362,501	-				+1.0
3,362,508	+				+0.6
3,362,508	+				+3.0
3,362,508	+				+1.2
3,362,508	+				+0.8
3,362,508	+				-1.5
3,362,509	-				+1.5
3,362,509	-				+0.3
3,362,509	-				-1.1
3,362,509	-				-0.4
3,362,509	-				+0.5
3,362,509	-				+0.7
3,362,509	-				-0.3
3,362,554	+				+1.0
3,362,555	-				+0.3
3,362,600	+				+0.8
3,362,637	+				+1.0
3,362,638	-				-0.7
3,362,669	-				-0.5
3,362,669	-				-0.9
3,362,669	-				-2.3
3,362,680	-				+1.0
3,362,686	+				+0.1
3,362,726	+				-1.1
3,362,746	+				+0.0
3,362,755	+				-0.6
3,362,756	-				+1.2
3,362,772	+				-1.4
3,362,773	-				+0.8
3,362,778	+				+0.1
3,362,779	-				-0.9
3,362,787	-				+0.7
3,362,807	+				+0.1
3,362,808	-				+0.2
3,362,808	-				+1.2
3,362,809	+				+0.1
3,362,809	+				+0.0
3,362,809	+				-0.5
3,362,809	+				+0.7
3,362,810	-				+0.7
3,362,855	-				-0.9
3,362,890	+				-0.6
3,362,890	+				-0.3
3,362,890	+				-0.0
3,362,891	-				-0.1
3,362,893	+				+1.8
3,362,893	+				+0.3
3,362,894	-				+0.5
3,362,894	-				-0.6
3,362,894	-				+0.3
3,362,894	-				-0.5
3,362,896	+				+0.1
3,362,911	+				-0.8
3,362,911	+				+0.7
3,362,912	-				-0.6
3,362,912	-				+0.3
3,362,915	+				-2.5
3,362,916	-				+0.9
3,363,019	+		DZA65_RS15515	0.14	-2.2
3,363,019	+		DZA65_RS15515	0.14	-2.1
3,363,041	-		DZA65_RS15515	0.17	+0.0
3,363,143	+		DZA65_RS15515	0.31	-1.6
3,363,145	+		DZA65_RS15515	0.31	-1.6
3,363,145	+		DZA65_RS15515	0.31	+0.1
3,363,145	+		DZA65_RS15515	0.31	-0.6
3,363,145	+		DZA65_RS15515	0.31	-1.3
3,363,145	+		DZA65_RS15515	0.31	+0.1
3,363,145	+		DZA65_RS15515	0.31	-2.6
3,363,146	-		DZA65_RS15515	0.31	-2.5
3,363,146	-		DZA65_RS15515	0.31	-1.5
3,363,146	-				-0.9
3,363,146	-		DZA65_RS15515	0.31	-0.3
3,363,146	-		DZA65_RS15515	0.31	-1.0
3,363,146	-		DZA65_RS15515	0.31	+0.7
3,363,167	+		DZA65_RS15515	0.34	+0.9
3,363,229	+		DZA65_RS15515	0.42	+3.0
3,363,230	-		DZA65_RS15515	0.42	-1.8
3,363,238	+		DZA65_RS15515	0.43	-0.3
3,363,246	-		DZA65_RS15515	0.44	-0.9
3,363,250	+		DZA65_RS15515	0.45	-0.9
3,363,250	+		DZA65_RS15515	0.45	-1.8
3,363,251	-		DZA65_RS15515	0.45	-2.1
3,363,251	-		DZA65_RS15515	0.45	-0.6
3,363,251	-		DZA65_RS15515	0.45	-1.9
3,363,263	+		DZA65_RS15515	0.46	-1.2
3,363,350	+		DZA65_RS15515	0.58	-0.7
3,363,350	+		DZA65_RS15515	0.58	-2.3
3,363,350	+		DZA65_RS15515	0.58	-0.3
3,363,351	-		DZA65_RS15515	0.58	-0.9
3,363,351	-		DZA65_RS15515	0.58	-1.6
3,363,351	-		DZA65_RS15515	0.58	-1.7
3,363,351	-		DZA65_RS15515	0.58	-0.3
3,363,389	-		DZA65_RS15515	0.63	-0.5
3,363,389	-		DZA65_RS15515	0.63	-0.9
3,363,410	-		DZA65_RS15515	0.66	-0.6
3,363,484	+		DZA65_RS15515	0.75	-0.1
3,363,484	+		DZA65_RS15515	0.75	+0.1
3,363,485	-		DZA65_RS15515	0.75	-0.9
3,363,485	-		DZA65_RS15515	0.75	-0.1
3,363,485	-		DZA65_RS15515	0.75	-2.5
3,363,521	-		DZA65_RS15515	0.80	-0.5
3,363,533	+		DZA65_RS15515	0.82	-0.9
3,363,534	-		DZA65_RS15515	0.82	-0.1
3,363,534	-		DZA65_RS15515	0.82	-1.1
3,363,534	-		DZA65_RS15515	0.82	-1.9
3,363,539	-		DZA65_RS15515	0.83	-1.9
3,363,539	-		DZA65_RS15515	0.83	-3.0
3,363,671	+				-0.1
3,363,676	+				+0.1
3,363,676	+				-0.2
3,363,676	+				-0.7
3,363,676	+				-0.1
3,363,676	+				-1.3
3,363,677	-				+1.0
3,363,677	-				-0.1
3,363,677	-				-1.6
3,363,677	-				+0.1
3,363,677	-				+0.2
3,363,677	-				+0.0
3,363,732	+				+1.7
3,363,732	+				-1.0
3,363,733	-				+0.0
3,363,733	-				-0.5
3,363,733	-				-0.5
3,363,733	-				+1.3
3,363,733	-				-0.1
3,363,733	-				-0.0
3,363,733	-				+0.7
3,363,733	-				+0.4
3,363,747	+				-1.8
3,363,747	+				+0.3
3,363,748	-				+0.9
3,363,748	-				-1.0
3,363,755	+				-0.3
3,363,755	+				-1.1
3,363,755	+				+0.5
3,363,755	+				+0.3
3,363,755	+				-0.6
3,363,755	+				-0.5
3,363,756	-				+0.0
3,363,756	-				+1.9
3,363,756	-				-1.1
3,363,756	-				+0.7
3,363,756	-				+1.4
3,363,758	+				-1.1
3,363,759	-				-0.1
3,363,759	-				-1.6
3,363,821	-				+0.4
3,363,852	+				-0.6
3,363,853	-				+0.0
3,363,853	-				-1.2
3,363,879	-				+0.3
3,363,879	-				-0.6
3,363,968	+				-0.5
3,363,968	+				-1.4
3,363,969	-				-1.6
3,363,971	+				-0.3
3,363,971	+				+0.1
3,363,972	-				-1.6
3,363,972	-				+0.9
3,363,973	+				+0.7
3,363,973	+				+0.6
3,363,973	+				+0.7
3,363,973	+				-2.6
3,363,973	+				+0.9
3,363,973	+				+0.1
3,363,973	+				+0.7
3,363,973	+				-0.2
3,363,973	+				-0.5
3,363,974	-				-0.3
3,363,974	-				-1.2
3,363,974	-				-0.9
3,363,974	-				-1.6
3,364,048	+				-0.6
3,364,048	+				-0.1
3,364,049	-				+0.4
3,364,064	-				-0.7
3,364,073	-				-1.5
3,364,132	-				-0.4
3,364,132	-				+0.5
3,364,132	-				+0.0
3,364,154	+				+0.3
3,364,154	+				-0.5
3,364,154	+				-0.4
3,364,155	-				-2.5
3,364,155	-				+0.1
3,364,155	-				-1.6
3,364,155	-				+0.0
3,364,179	+				-1.1
3,364,180	-		DZA65_RS15520	0.11	-1.3
3,364,180	-		DZA65_RS15520	0.11	-1.2
3,364,180	-		DZA65_RS15520	0.11	-1.1
3,364,183	+		DZA65_RS15520	0.15	-0.6
3,364,184	-		DZA65_RS15520	0.16	-1.5
3,364,191	+		DZA65_RS15520	0.25	-1.6
3,364,193	+		DZA65_RS15520	0.28	-1.1
3,364,193	+		DZA65_RS15520	0.28	-1.8
3,364,193	+		DZA65_RS15520	0.28	-1.3
3,364,193	+		DZA65_RS15520	0.28	-1.4
3,364,193	+		DZA65_RS15520	0.28	-0.9
3,364,193	+		DZA65_RS15520	0.28	-2.3
3,364,193	+		DZA65_RS15520	0.28	-1.6
3,364,193	+		DZA65_RS15520	0.28	-1.3
3,364,193	+		DZA65_RS15520	0.28	-0.9
3,364,193	+		DZA65_RS15520	0.28	-1.9
3,364,194	-				-0.9
3,364,194	-		DZA65_RS15520	0.29	-1.1
3,364,194	-		DZA65_RS15520	0.29	-0.9
3,364,194	-		DZA65_RS15520	0.29	+0.3
3,364,194	-		DZA65_RS15520	0.29	-1.7
3,364,194	-		DZA65_RS15520	0.29	-0.1
3,364,194	-		DZA65_RS15520	0.29	-1.1
3,364,194	-		DZA65_RS15520	0.29	-0.1
3,364,194	-		DZA65_RS15520	0.29	-2.9
3,364,194	-		DZA65_RS15520	0.29	-0.3
3,364,194	-		DZA65_RS15520	0.29	-2.2
3,364,194	-		DZA65_RS15520	0.29	-2.1
3,364,194	-		DZA65_RS15520	0.29	-3.6
3,364,207	+		DZA65_RS15520	0.47	-2.8
3,364,207	+		DZA65_RS15520	0.47	-0.3
3,364,208	-		DZA65_RS15520	0.48	-3.1
3,364,214	+		DZA65_RS15520	0.56	-2.3
3,364,214	+		DZA65_RS15520	0.56	-1.3
3,364,215	-		DZA65_RS15520	0.57	+0.5
3,364,248	+				+0.8
3,364,253	+				-0.1
3,364,272	+				-0.3
3,364,272	+				-0.1
3,364,272	+				-1.3
3,364,278	+				+0.7
3,364,279	-				+0.1
3,364,279	-				+1.7
3,364,352	+				+0.1
3,364,352	+				-0.5
3,364,353	-				-0.8
3,364,353	-				-0.9
3,364,353	-				-1.3
3,364,390	+				+0.7
3,364,390	+				+1.3
3,364,390	+				-0.3
3,364,391	-				-0.2
3,364,391	-				-1.5
3,364,392	+				-0.0
3,364,403	+				+0.2
3,364,411	+				-0.1
3,364,411	+				-0.8
3,364,412	-				-1.6
3,364,522	+				-0.6
3,364,522	+				-0.9
3,364,522	+				-0.3
3,364,522	+				+0.8
3,364,522	+				+1.3
3,364,523	-				+0.8
3,364,523	-				+0.2
3,364,589	+				+0.7
3,364,633	+		DZA65_RS15525	0.14	-0.3
3,364,634	-		DZA65_RS15525	0.14	-0.8
3,364,634	-		DZA65_RS15525	0.14	+0.4
3,364,634	-		DZA65_RS15525	0.14	-1.6