Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,352,773	-				+0.2
3,352,836	-				-0.3
3,352,950	-		DZA65_RS15470	0.12	-1.3
3,353,016	-		DZA65_RS15470	0.20	+0.7
3,353,139	-		DZA65_RS15470	0.33	-0.0
3,353,218	-		DZA65_RS15470	0.41	+0.3
3,353,218	-		DZA65_RS15470	0.41	-0.7
3,353,218	-		DZA65_RS15470	0.41	-0.3
3,353,218	-		DZA65_RS15470	0.41	-1.1
3,353,218	-		DZA65_RS15470	0.41	-1.6
3,353,218	-		DZA65_RS15470	0.41	-1.1
3,353,220	-		DZA65_RS15470	0.41	-1.3
3,353,220	-		DZA65_RS15470	0.41	-0.6
3,353,220	-		DZA65_RS15470	0.41	-0.6
3,353,220	-		DZA65_RS15470	0.41	-0.3
3,353,220	-		DZA65_RS15470	0.41	-0.0
3,353,278	-		DZA65_RS15470	0.48	-2.5
3,353,278	-		DZA65_RS15470	0.48	-1.2
3,353,362	-		DZA65_RS15470	0.57	-2.3
3,353,362	-		DZA65_RS15470	0.57	+0.1
3,353,362	-				-0.3
3,353,493	-		DZA65_RS15470	0.71	-2.1
3,353,493	-		DZA65_RS15470	0.71	+0.1
3,353,506	-		DZA65_RS15470	0.72	+0.5
3,353,506	-		DZA65_RS15470	0.72	-0.1
3,353,506	-		DZA65_RS15470	0.72	+0.1
3,353,577	-		DZA65_RS15470	0.80	-0.3
3,353,577	-		DZA65_RS15470	0.80	+2.4
3,353,577	-		DZA65_RS15470	0.80	-0.9
3,353,577	-		DZA65_RS15470	0.80	-2.6
3,353,577	-		DZA65_RS15470	0.80	+0.7
3,353,577	-		DZA65_RS15470	0.80	+1.1
3,353,577	-		DZA65_RS15470	0.80	+1.8
3,353,577	-				+1.4
3,353,667	-		DZA65_RS15470	0.89	+0.2
3,353,670	-				+1.4
3,353,725	-				+0.2
3,353,725	-				-0.3
3,353,725	-				+0.7
3,353,725	-				-1.5
3,353,785	-				-0.2
3,353,785	-				-1.3
3,353,785	-				-0.4
3,353,785	-				+0.1
3,353,827	-				+1.7
3,353,827	-				+0.3
3,353,827	-				+0.1
3,353,827	-				-1.6
3,353,831	-				-1.1
3,353,831	-				+0.7
3,353,831	-				+0.8
3,353,831	-				+2.1
3,353,831	-				-0.3
3,353,831	-				+0.5
3,353,831	-				-1.5
3,353,831	-				-0.5
3,353,831	-				+0.9
3,353,831	-				-2.1
3,353,831	-				-1.6
3,353,831	-				-0.9
3,353,831	-				-0.0
3,353,831	-				-0.6
3,353,869	-				-1.6
3,353,869	-				+0.5
3,353,869	-				-0.6
3,353,890	-				+0.5
3,353,894	-				+1.3
3,353,894	-				+0.4
3,353,894	-				+1.2
3,353,894	-				+0.1
3,353,894	-				+3.1
3,353,894	-				-0.3
3,353,894	-				+0.9
3,353,894	-				-0.3
3,353,927	+				+1.3
3,353,928	-				+0.1
3,353,928	-				-1.6
3,354,003	+				-0.3
3,354,003	+				+0.1
3,354,003	+				+2.0
3,354,003	+				+0.1
3,354,003	+				-0.8
3,354,004	-				+0.7
3,354,004	-				-0.5
3,354,004	-				-1.7
3,354,004	-				-0.5
3,354,004	-				-1.1
3,354,004	-				-0.6
3,354,004	-				+0.7
3,354,004	-				+0.3
3,354,004	-				-0.0
3,354,004	-				-1.1
3,354,004	-				+0.7
3,354,004	-				+0.7
3,354,007	+				+0.5
3,354,007	+				-0.5
3,354,007	+				+1.4
3,354,007	+				+1.0
3,354,007	+				+0.7
3,354,007	+				-0.6
3,354,007	+				+0.1
3,354,008	-				-0.1
3,354,008	-				-1.1
3,354,008	-				+0.2
3,354,011	-				-1.8
3,354,011	-				+0.5
3,354,100	+				+0.7
3,354,101	-				-1.2
3,354,113	+				-0.6
3,354,113	+				-1.1
3,354,113	+				+1.2
3,354,234	+		DZA65_RS15475	0.16	-0.4
3,354,234	+		DZA65_RS15475	0.16	-1.9
3,354,234	+		DZA65_RS15475	0.16	-1.9
3,354,234	+		DZA65_RS15475	0.16	+0.5
3,354,234	+		DZA65_RS15475	0.16	+0.9
3,354,234	+		DZA65_RS15475	0.16	+0.8
3,354,234	+		DZA65_RS15475	0.16	-1.6
3,354,234	+		DZA65_RS15475	0.16	-1.8
3,354,234	+		DZA65_RS15475	0.16	+0.3
3,354,234	+		DZA65_RS15475	0.16	+0.3
3,354,234	+		DZA65_RS15475	0.16	-0.5
3,354,234	+		DZA65_RS15475	0.16	+0.1
3,354,234	+		DZA65_RS15475	0.16	+0.7
3,354,234	+		DZA65_RS15475	0.16	+0.5
3,354,234	+		DZA65_RS15475	0.16	+0.1
3,354,234	+		DZA65_RS15475	0.16	-1.3
3,354,234	+		DZA65_RS15475	0.16	+0.4
3,354,234	+		DZA65_RS15475	0.16	-0.4
3,354,234	+		DZA65_RS15475	0.16	+1.0
3,354,234	+		DZA65_RS15475	0.16	-0.3
3,354,234	+		DZA65_RS15475	0.16	-0.1
3,354,234	+		DZA65_RS15475	0.16	+1.7
3,354,234	+		DZA65_RS15475	0.16	-1.9
3,354,234	+		DZA65_RS15475	0.16	-0.3
3,354,234	+		DZA65_RS15475	0.16	-0.1
3,354,235	-		DZA65_RS15475	0.16	-1.9
3,354,235	-		DZA65_RS15475	0.16	-2.1
3,354,235	-		DZA65_RS15475	0.16	+0.7
3,354,235	-		DZA65_RS15475	0.16	-0.5
3,354,235	-		DZA65_RS15475	0.16	-3.4
3,354,235	-		DZA65_RS15475	0.16	-0.9
3,354,235	-		DZA65_RS15475	0.16	+0.2
3,354,235	-		DZA65_RS15475	0.16	+0.1
3,354,235	-		DZA65_RS15475	0.16	+0.5
3,354,235	-		DZA65_RS15475	0.16	-1.1
3,354,235	-		DZA65_RS15475	0.16	+0.1
3,354,235	-		DZA65_RS15475	0.16	+0.4
3,354,316	-		DZA65_RS15475	0.31	-0.6
3,354,366	+		DZA65_RS15475	0.40	-0.3
3,354,366	+		DZA65_RS15475	0.40	+1.1
3,354,366	+		DZA65_RS15475	0.40	+0.1
3,354,366	+		DZA65_RS15475	0.40	-1.9
3,354,366	+		DZA65_RS15475	0.40	+0.4
3,354,366	+		DZA65_RS15475	0.40	-1.3
3,354,367	-		DZA65_RS15475	0.41	-1.5
3,354,420	+		DZA65_RS15475	0.50	-1.3
3,354,515	+		DZA65_RS15475	0.68	-0.4
3,354,515	+		DZA65_RS15475	0.68	-0.2
3,354,515	+		DZA65_RS15475	0.68	+0.3
3,354,515	+		DZA65_RS15475	0.68	+1.3
3,354,515	+		DZA65_RS15475	0.68	+1.4
3,354,515	+		DZA65_RS15475	0.68	+1.7
3,354,515	+		DZA65_RS15475	0.68	-0.1
3,354,515	+		DZA65_RS15475	0.68	+1.0
3,354,515	+		DZA65_RS15475	0.68	+0.0
3,354,515	+		DZA65_RS15475	0.68	-2.6
3,354,515	+		DZA65_RS15475	0.68	-0.3
3,354,516	-		DZA65_RS15475	0.68	-0.3
3,354,516	-		DZA65_RS15475	0.68	+1.2
3,354,516	-		DZA65_RS15475	0.68	-2.3
3,354,516	-		DZA65_RS15475	0.68	+0.3
3,354,516	-		DZA65_RS15475	0.68	+0.5
3,354,516	-		DZA65_RS15475	0.68	-0.9
3,354,516	-		DZA65_RS15475	0.68	-0.4
3,354,516	-				+1.3
3,354,516	-		DZA65_RS15475	0.68	-0.0
3,354,519	+		DZA65_RS15475	0.69	+0.1
3,354,519	+		DZA65_RS15475	0.69	-0.2
3,354,519	+		DZA65_RS15475	0.69	-1.2
3,354,519	+		DZA65_RS15475	0.69	+1.3
3,354,519	+		DZA65_RS15475	0.69	-0.5
3,354,519	+		DZA65_RS15475	0.69	+0.2
3,354,519	+		DZA65_RS15475	0.69	-0.5
3,354,519	+		DZA65_RS15475	0.69	-0.5
3,354,520	-		DZA65_RS15475	0.69	+0.7
3,354,520	-		DZA65_RS15475	0.69	-0.5
3,354,520	-				-0.9
3,354,520	-		DZA65_RS15475	0.69	+1.3
3,354,520	-		DZA65_RS15475	0.69	-0.8
3,354,556	+		DZA65_RS15475	0.75	+1.2
3,354,556	+		DZA65_RS15475	0.75	+0.4
3,354,556	+		DZA65_RS15475	0.75	+0.4
3,354,556	+		DZA65_RS15475	0.75	+0.1
3,354,556	+		DZA65_RS15475	0.75	-0.1
3,354,557	-		DZA65_RS15475	0.76	-0.6
3,354,557	-		DZA65_RS15475	0.76	+1.0
3,354,557	-		DZA65_RS15475	0.76	-1.0
3,354,557	-		DZA65_RS15475	0.76	-0.3
3,354,557	-		DZA65_RS15475	0.76	+0.5
3,354,601	+		DZA65_RS15475	0.84	-2.2
3,354,601	+		DZA65_RS15475	0.84	+0.7
3,354,602	-		DZA65_RS15475	0.84	+1.0
3,354,602	-		DZA65_RS15475	0.84	-1.1
3,354,602	-		DZA65_RS15475	0.84	+2.0
3,354,602	-		DZA65_RS15475	0.84	+1.7
3,354,602	-		DZA65_RS15475	0.84	-1.9
3,354,687	+				+0.9