Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15405

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,337,437	+		DZA65_RS15395	0.56	-0.0
3,337,438	-		DZA65_RS15395	0.56	-0.3
3,337,438	-		DZA65_RS15395	0.56	+2.1
3,337,492	+		DZA65_RS15395	0.62	-0.0
3,337,492	+		DZA65_RS15395	0.62	-0.2
3,337,493	-		DZA65_RS15395	0.62	-1.5
3,337,493	-		DZA65_RS15395	0.62	-1.0
3,337,493	-		DZA65_RS15395	0.62	+0.1
3,337,511	+		DZA65_RS15395	0.64	+0.1
3,337,613	+		DZA65_RS15395	0.74	+0.3
3,337,613	+		DZA65_RS15395	0.74	-0.3
3,337,613	+		DZA65_RS15395	0.74	-3.9
3,337,614	-		DZA65_RS15395	0.74	-1.1
3,337,614	-		DZA65_RS15395	0.74	-0.2
3,337,626	+				+1.1
3,337,659	+		DZA65_RS15395	0.79	+0.0
3,337,660	-		DZA65_RS15395	0.79	+0.3
3,337,660	-		DZA65_RS15395	0.79	+0.7
3,337,689	+		DZA65_RS15395	0.82	-0.7
3,337,689	+		DZA65_RS15395	0.82	-0.2
3,337,690	-		DZA65_RS15395	0.82	-1.0
3,337,712	+		DZA65_RS15395	0.84	+0.2
3,337,713	-		DZA65_RS15395	0.84	-0.1
3,337,713	-		DZA65_RS15395	0.84	-0.7
3,337,803	+				+1.3
3,337,803	+				+1.0
3,337,803	+				-1.2
3,337,803	+				+0.1
3,337,803	+				+1.2
3,337,803	+				-0.3
3,337,803	+				-1.5
3,337,804	-				-1.7
3,337,804	-				-0.9
3,337,804	-				+1.5
3,337,804	-				+2.5
3,337,804	-				+0.9
3,337,804	-				-1.1
3,337,804	-				-1.3
3,337,804	-				+1.3
3,337,804	-				+0.3
3,337,804	-				-0.6
3,337,828	-				+1.1
3,337,828	-				-0.3
3,337,860	-				-0.2
3,337,961	+		DZA65_RS15400	0.19	+1.1
3,337,961	+		DZA65_RS15400	0.19	+0.7
3,337,961	+		DZA65_RS15400	0.19	-0.3
3,337,961	+		DZA65_RS15400	0.19	-0.4
3,337,962	-		DZA65_RS15400	0.19	+1.1
3,337,962	-		DZA65_RS15400	0.19	-0.5
3,337,962	-		DZA65_RS15400	0.19	+1.3
3,337,962	-		DZA65_RS15400	0.19	-0.1
3,337,962	-		DZA65_RS15400	0.19	-0.9
3,337,967	+		DZA65_RS15400	0.20	-2.3
3,337,967	+		DZA65_RS15400	0.20	+0.3
3,337,967	+		DZA65_RS15400	0.20	+1.2
3,337,967	+		DZA65_RS15400	0.20	+1.1
3,337,967	+		DZA65_RS15400	0.20	+0.9
3,337,968	-		DZA65_RS15400	0.21	-1.6
3,337,968	-				+0.7
3,338,005	-		DZA65_RS15400	0.29	-0.5
3,338,094	+		DZA65_RS15400	0.50	-0.1
3,338,094	+		DZA65_RS15400	0.50	+1.0
3,338,095	-		DZA65_RS15400	0.50	+2.4
3,338,095	-		DZA65_RS15400	0.50	+1.4
3,338,123	+		DZA65_RS15400	0.57	+0.1
3,338,124	-		DZA65_RS15400	0.57	-0.7
3,338,124	-		DZA65_RS15400	0.57	+0.8
3,338,124	-		DZA65_RS15400	0.57	+0.9
3,338,188	+		DZA65_RS15400	0.72	+0.7
3,338,188	+		DZA65_RS15400	0.72	+1.0
3,338,188	+		DZA65_RS15400	0.72	-1.3
3,338,189	-		DZA65_RS15400	0.72	+0.4
3,338,189	-		DZA65_RS15400	0.72	-1.2
3,338,244	+		DZA65_RS15400	0.85	+1.0
3,338,245	-		DZA65_RS15400	0.85	-0.2
3,338,255	+		DZA65_RS15400	0.87	-0.3
3,338,256	-		DZA65_RS15400	0.88	-0.9
3,338,307	-				+0.7
3,338,317	+				+1.7
3,338,317	+				-1.9
3,338,318	-				-1.4
3,338,318	-				+0.7
3,338,318	-				+1.2
3,338,329	+				-0.3
3,338,531	+		DZA65_RS15405	0.14	+0.7
3,338,531	+		DZA65_RS15405	0.14	+1.0
3,338,662	+		DZA65_RS15405	0.22	+0.8
3,338,662	+		DZA65_RS15405	0.22	-0.5
3,338,662	+		DZA65_RS15405	0.22	+1.3
3,338,662	+		DZA65_RS15405	0.22	-1.3
3,338,663	-				+2.0
3,338,768	+		DZA65_RS15405	0.29	+0.4
3,338,768	+		DZA65_RS15405	0.29	+0.1
3,338,769	-		DZA65_RS15405	0.29	+0.9
3,339,048	+		DZA65_RS15405	0.48	+1.7
3,339,048	+				+0.7
3,339,048	+		DZA65_RS15405	0.48	+1.4
3,339,049	-		DZA65_RS15405	0.48	+0.7
3,339,049	-		DZA65_RS15405	0.48	-0.2
3,339,049	-		DZA65_RS15405	0.48	-0.0
3,339,069	+		DZA65_RS15405	0.49	+0.7
3,339,069	+		DZA65_RS15405	0.49	-0.5
3,339,069	+		DZA65_RS15405	0.49	-0.1
3,339,069	+		DZA65_RS15405	0.49	+1.4
3,339,069	+		DZA65_RS15405	0.49	+0.0
3,339,069	+		DZA65_RS15405	0.49	-0.6
3,339,070	-		DZA65_RS15405	0.49	+0.8
3,339,070	-		DZA65_RS15405	0.49	-0.6
3,339,070	-		DZA65_RS15405	0.49	-0.1
3,339,070	-		DZA65_RS15405	0.49	+0.4
3,339,070	-		DZA65_RS15405	0.49	+0.1
3,339,070	-		DZA65_RS15405	0.49	+0.7
3,339,070	-		DZA65_RS15405	0.49	+0.6
3,339,070	-		DZA65_RS15405	0.49	-1.1
3,339,070	-		DZA65_RS15405	0.49	-0.2
3,339,070	-		DZA65_RS15405	0.49	+1.0
3,339,070	-		DZA65_RS15405	0.49	+0.3
3,339,070	-		DZA65_RS15405	0.49	+0.4
3,339,250	+		DZA65_RS15405	0.61	+0.3
3,339,251	-		DZA65_RS15405	0.61	-0.1
3,339,274	+		DZA65_RS15405	0.63	+0.7
3,339,345	-		DZA65_RS15405	0.67	-0.1
3,339,345	-		DZA65_RS15405	0.67	+1.0
3,339,345	-		DZA65_RS15405	0.67	+0.9
3,339,349	+		DZA65_RS15405	0.68	+1.2
3,339,349	+		DZA65_RS15405	0.68	+0.1
3,339,349	+		DZA65_RS15405	0.68	-0.5
3,339,349	+		DZA65_RS15405	0.68	-0.2
3,339,349	+		DZA65_RS15405	0.68	-1.9
3,339,350	-		DZA65_RS15405	0.68	+0.9
3,339,350	-		DZA65_RS15405	0.68	+0.1
3,339,350	-		DZA65_RS15405	0.68	+0.5
3,339,350	-		DZA65_RS15405	0.68	+0.7
3,339,373	+		DZA65_RS15405	0.69	-0.9
3,339,438	+		DZA65_RS15405	0.73	-1.3
3,339,439	-		DZA65_RS15405	0.73	+1.3
3,339,475	+		DZA65_RS15405	0.76	+1.3
3,339,475	+		DZA65_RS15405	0.76	-1.8
3,339,539	+		DZA65_RS15405	0.80	-0.1
3,339,540	-		DZA65_RS15405	0.80	-2.1
3,339,547	-		DZA65_RS15405	0.81	+0.1
3,339,547	-		DZA65_RS15405	0.81	-0.3
3,339,556	+		DZA65_RS15405	0.81	+0.3
3,339,556	+		DZA65_RS15405	0.81	-1.1
3,339,556	+		DZA65_RS15405	0.81	-1.9
3,339,557	-		DZA65_RS15405	0.81	+0.1
3,339,557	-		DZA65_RS15405	0.81	-0.6
3,339,557	-		DZA65_RS15405	0.81	+1.2
3,339,557	-		DZA65_RS15405	0.81	+0.7
3,339,557	-		DZA65_RS15405	0.81	-0.1
3,339,711	+				+1.3
3,339,744	+				-1.5
3,339,744	+				+1.3
3,339,744	+				-0.6
3,339,744	+				-0.1
3,339,744	+				-1.2
3,339,745	-				+0.3
3,339,745	-				-2.5
3,339,745	-				-1.2
3,339,745	-				-1.3
3,339,794	+				-0.8
3,339,795	-				-0.3
3,339,852	-				+0.9
3,339,873	+				+1.5
3,339,874	-				+0.4
3,339,913	+				+0.3
3,340,017	-				+0.7
3,340,066	-				+0.5
3,340,093	+				-0.5
3,340,093	+				-0.9
3,340,093	+				+0.3
3,340,096	+				+0.0
3,340,097	-				+1.9
3,340,097	-				+0.4
3,340,110	+				-1.6
3,340,111	-				-0.3
3,340,111	-				-0.1
3,340,111	-				+0.9
3,340,111	-				+0.9
3,340,136	+				-1.3
3,340,136	+				-0.9
3,340,136	+				+3.5
3,340,136	+				-0.5
3,340,136	+				-0.3
3,340,136	+				-0.9
3,340,136	+				+0.3
3,340,136	+				-0.1
3,340,136	+				+0.7
3,340,136	+				-0.9
3,340,136	+				+0.1
3,340,136	+				+0.9
3,340,136	+				+1.3
3,340,136	+				-0.7
3,340,136	+				-0.6
3,340,137	-				+0.4
3,340,137	-				-0.3
3,340,137	-				-0.5
3,340,137	-				-0.3
3,340,140	+				-0.0
3,340,140	+				-1.9
3,340,140	+				+0.2
3,340,140	+				-1.6
3,340,140	+				+0.3
3,340,140	+				+0.7
3,340,140	+				+0.1
3,340,140	+				+0.2
3,340,140	+				+0.7
3,340,140	+				+0.7
3,340,140	+				+0.0
3,340,140	+				-0.5
3,340,140	+				-0.6
3,340,140	+				+0.9
3,340,140	+				-0.3
3,340,141	-				-0.2
3,340,141	-				+1.3
3,340,141	-				-1.1
3,340,141	-				+0.5
3,340,141	-				+0.7
3,340,141	-				-1.6
3,340,141	-				-0.4
3,340,141	-				-0.9
3,340,141	-				+0.7
3,340,141	-				-1.3
3,340,141	-				-0.9
3,340,141	-				-1.6
3,340,141	-				+0.5
3,340,141	-				-0.1
3,340,141	-				+1.3
3,340,141	-				+1.0
3,340,141	-				-0.9
3,340,171	+				+0.1
3,340,172	-				+0.1
3,340,190	-				+0.2
3,340,195	-				-1.6
3,340,266	+				-0.3
3,340,266	+				+0.7
3,340,266	+				-0.9
3,340,266	+				-0.5
3,340,266	+				-2.3
3,340,266	+				-0.2
3,340,266	+				+1.2
3,340,266	+				-0.1
3,340,266	+				+1.1
3,340,266	+				-0.3
3,340,267	-				-1.6
3,340,267	-				-1.3
3,340,267	-				-1.9
3,340,267	-				+0.3
3,340,267	-				+0.1
3,340,267	-				+2.3
3,340,344	-		DZA65_RS15410	0.11	+0.7
3,340,368	+		DZA65_RS15410	0.13	-0.4
3,340,369	-		DZA65_RS15410	0.13	+1.3
3,340,369	-		DZA65_RS15410	0.13	-0.1
3,340,369	-		DZA65_RS15410	0.13	+2.1
3,340,369	-		DZA65_RS15410	0.13	+1.3
3,340,404	-		DZA65_RS15410	0.16	-0.8
3,340,404	-		DZA65_RS15410	0.16	-0.9
3,340,549	-		DZA65_RS15410	0.27	+0.7
3,340,641	+		DZA65_RS15410	0.35	-0.5