Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15095

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,289,880	+		DZA65_RS15080	0.71	+0.6
3,289,881	-		DZA65_RS15080	0.71	-1.0
3,289,881	-		DZA65_RS15080	0.71	+0.5
3,289,884	+		DZA65_RS15080	0.72	-0.4
3,289,884	+		DZA65_RS15080	0.72	-1.4
3,289,884	+		DZA65_RS15080	0.72	+1.0
3,289,884	+		DZA65_RS15080	0.72	+0.1
3,289,884	+		DZA65_RS15080	0.72	+0.5
3,289,884	+		DZA65_RS15080	0.72	+0.6
3,289,885	-		DZA65_RS15080	0.72	-0.7
3,289,885	-		DZA65_RS15080	0.72	+0.4
3,289,885	-		DZA65_RS15080	0.72	-0.6
3,289,885	-		DZA65_RS15080	0.72	+1.6
3,289,885	-		DZA65_RS15080	0.72	-1.0
3,289,885	-		DZA65_RS15080	0.72	-0.5
3,289,885	-		DZA65_RS15080	0.72	+1.2
3,289,891	-		DZA65_RS15080	0.73	+0.4
3,289,995	-		DZA65_RS15080	0.88	-2.5
3,290,046	+				+0.2
3,290,046	+				-1.2
3,290,047	-				-1.4
3,290,047	-				-0.7
3,290,047	-				+0.0
3,290,047	-				+0.6
3,290,047	-				+0.1
3,290,138	+		DZA65_RS15085	0.14	+1.3
3,290,139	-		DZA65_RS15085	0.15	-1.3
3,290,139	-		DZA65_RS15085	0.15	-0.9
3,290,139	-		DZA65_RS15085	0.15	+0.6
3,290,236	+		DZA65_RS15085	0.37	+0.6
3,290,236	+		DZA65_RS15085	0.37	+3.1
3,290,237	-		DZA65_RS15085	0.37	-0.1
3,290,237	-		DZA65_RS15085	0.37	+1.1
3,290,237	-		DZA65_RS15085	0.37	-0.5
3,290,237	-		DZA65_RS15085	0.37	-0.7
3,290,237	-		DZA65_RS15085	0.37	-0.4
3,290,237	-		DZA65_RS15085	0.37	+1.6
3,290,268	-		DZA65_RS15085	0.44	-1.2
3,290,365	+		DZA65_RS15085	0.67	+0.1
3,290,365	+		DZA65_RS15085	0.67	-0.1
3,290,365	+		DZA65_RS15085	0.67	+0.1
3,290,365	+		DZA65_RS15085	0.67	+0.3
3,290,365	+		DZA65_RS15085	0.67	-0.9
3,290,365	+		DZA65_RS15085	0.67	+1.0
3,290,365	+		DZA65_RS15085	0.67	-0.3
3,290,366	-		DZA65_RS15085	0.67	+1.1
3,290,366	-		DZA65_RS15085	0.67	-0.1
3,290,366	-		DZA65_RS15085	0.67	-0.8
3,290,409	+		DZA65_RS15085	0.77	-0.3
3,290,410	-		DZA65_RS15085	0.77	-1.4
3,290,410	-		DZA65_RS15085	0.77	-2.5
3,290,482	-				+0.6
3,290,503	+				-1.1
3,290,503	+				+0.1
3,290,503	+				+1.6
3,290,503	+				+1.2
3,290,503	+				+1.4
3,290,503	+				+2.9
3,290,503	+				-1.7
3,290,503	+				+2.0
3,290,503	+				+2.5
3,290,503	+				-0.4
3,290,504	-				+0.3
3,290,504	-				+1.1
3,290,504	-				+0.1
3,290,504	-				+0.6
3,290,504	-				-1.7
3,290,504	-				-0.4
3,290,504	-				-0.4
3,290,508	+				-0.4
3,290,508	+				+0.2
3,290,508	+				+0.6
3,290,508	+				-0.4
3,290,508	+				-0.1
3,290,508	+				+1.2
3,290,508	+				+0.9
3,290,508	+				-0.4
3,290,508	+				+0.1
3,290,508	+				+0.1
3,290,509	-				+0.6
3,290,509	-				+0.3
3,290,509	-				-2.2
3,290,509	-				-2.7
3,290,549	+		DZA65_RS15090	0.12	+1.5
3,290,716	+		DZA65_RS15090	0.59	+0.9
3,290,787	+		DZA65_RS15090	0.78	+2.4
3,290,788	-		DZA65_RS15090	0.79	-1.9
3,290,788	-		DZA65_RS15090	0.79	-0.1
3,290,791	+		DZA65_RS15090	0.80	+1.0
3,290,791	+		DZA65_RS15090	0.80	+0.0
3,290,791	+		DZA65_RS15090	0.80	+1.3
3,290,791	+		DZA65_RS15090	0.80	+0.3
3,290,791	+		DZA65_RS15090	0.80	-0.6
3,290,791	+		DZA65_RS15090	0.80	+0.1
3,290,791	+		DZA65_RS15090	0.80	-0.1
3,290,791	+		DZA65_RS15090	0.80	+0.0
3,290,792	-		DZA65_RS15090	0.80	-1.4
3,290,792	-		DZA65_RS15090	0.80	-0.0
3,290,792	-		DZA65_RS15090	0.80	-0.4
3,290,792	-		DZA65_RS15090	0.80	-0.1
3,290,864	+				-0.3
3,290,865	-				-1.4
3,290,889	-				-1.1
3,290,978	+		DZA65_RS15095	0.13	-1.9
3,290,978	+		DZA65_RS15095	0.13	+0.1
3,290,979	-		DZA65_RS15095	0.13	+0.9
3,290,979	-		DZA65_RS15095	0.13	+0.6
3,291,009	+		DZA65_RS15095	0.16	-1.6
3,291,010	-		DZA65_RS15095	0.16	-0.8
3,291,010	-		DZA65_RS15095	0.16	-0.4
3,291,020	+		DZA65_RS15095	0.17	-2.7
3,291,020	+		DZA65_RS15095	0.17	-0.5
3,291,021	-		DZA65_RS15095	0.17	+0.4
3,291,116	+		DZA65_RS15095	0.28	-0.9
3,291,116	+		DZA65_RS15095	0.28	+0.1
3,291,116	+		DZA65_RS15095	0.28	+0.1
3,291,116	+		DZA65_RS15095	0.28	-0.3
3,291,116	+		DZA65_RS15095	0.28	-1.0
3,291,117	-		DZA65_RS15095	0.28	-0.1
3,291,117	-		DZA65_RS15095	0.28	-0.0
3,291,162	-		DZA65_RS15095	0.33	-0.9
3,291,162	-		DZA65_RS15095	0.33	-1.9
3,291,162	-		DZA65_RS15095	0.33	-0.9
3,291,211	-		DZA65_RS15095	0.38	+0.2
3,291,244	+		DZA65_RS15095	0.42	-0.1
3,291,245	-		DZA65_RS15095	0.42	-1.5
3,291,272	+		DZA65_RS15095	0.45	-2.7
3,291,272	+		DZA65_RS15095	0.45	-0.4
3,291,272	+		DZA65_RS15095	0.45	-0.9
3,291,273	-		DZA65_RS15095	0.45	-1.5
3,291,315	+		DZA65_RS15095	0.50	-0.6
3,291,316	-		DZA65_RS15095	0.50	-1.4
3,291,316	-		DZA65_RS15095	0.50	+0.1
3,291,319	-		DZA65_RS15095	0.50	-0.2
3,291,360	+		DZA65_RS15095	0.55	+0.2
3,291,383	+		DZA65_RS15095	0.57	-0.7
3,291,384	-		DZA65_RS15095	0.57	-0.4
3,291,384	-		DZA65_RS15095	0.57	-0.6
3,291,384	-		DZA65_RS15095	0.57	-0.4
3,291,397	-		DZA65_RS15095	0.59	+1.1
3,291,397	-		DZA65_RS15095	0.59	-1.8
3,291,474	+		DZA65_RS15095	0.67	+0.1
3,291,475	-				-0.4
3,291,475	-		DZA65_RS15095	0.67	-0.4
3,291,543	+		DZA65_RS15095	0.75	+0.8
3,291,543	+		DZA65_RS15095	0.75	+0.6
3,291,555	+		DZA65_RS15095	0.76	-0.4
3,291,556	-		DZA65_RS15095	0.76	-2.2
3,291,556	-		DZA65_RS15095	0.76	-1.7
3,291,557	+		DZA65_RS15095	0.76	-1.7
3,291,557	+		DZA65_RS15095	0.76	-1.9
3,291,557	+		DZA65_RS15095	0.76	+0.4
3,291,557	+		DZA65_RS15095	0.76	-0.4
3,291,557	+		DZA65_RS15095	0.76	+1.3
3,291,557	+		DZA65_RS15095	0.76	-0.5
3,291,557	+		DZA65_RS15095	0.76	+0.2
3,291,557	+		DZA65_RS15095	0.76	-1.7
3,291,558	-		DZA65_RS15095	0.76	-2.2
3,291,558	-		DZA65_RS15095	0.76	+1.4
3,291,558	-		DZA65_RS15095	0.76	+1.2
3,291,558	-		DZA65_RS15095	0.76	-2.2
3,291,561	+		DZA65_RS15095	0.77	-0.4
3,291,562	-		DZA65_RS15095	0.77	-0.8
3,291,562	-		DZA65_RS15095	0.77	-1.4
3,291,562	-		DZA65_RS15095	0.77	+0.0
3,291,562	-		DZA65_RS15095	0.77	+0.6
3,291,588	+		DZA65_RS15095	0.80	+0.1
3,291,588	+		DZA65_RS15095	0.80	+1.2
3,291,635	+		DZA65_RS15095	0.85	+0.3
3,291,736	-				+0.2
3,291,774	+				+0.3
3,291,774	+				+0.6
3,291,775	-				+0.6
3,291,775	-				+1.9
3,291,775	-				-0.9
3,291,775	-				+0.9
3,291,775	-				-1.1
3,291,775	-				-0.1
3,291,775	-				-1.3
3,291,785	+				-0.1
3,291,849	+		DZA65_RS15100	0.16	+0.8
3,291,890	+		DZA65_RS15100	0.27	-0.1
3,291,890	+		DZA65_RS15100	0.27	+0.6
3,291,890	+		DZA65_RS15100	0.27	+0.6
3,291,890	+		DZA65_RS15100	0.27	-0.1
3,291,891	-		DZA65_RS15100	0.27	+0.2
3,291,891	-		DZA65_RS15100	0.27	+1.2
3,291,891	-		DZA65_RS15100	0.27	-1.7
3,291,891	-		DZA65_RS15100	0.27	-0.7
3,291,891	-		DZA65_RS15100	0.27	+0.1
3,291,891	-		DZA65_RS15100	0.27	-2.7
3,292,005	+		DZA65_RS15100	0.56	-0.6
3,292,005	+		DZA65_RS15100	0.56	-1.2
3,292,096	-		DZA65_RS15100	0.79	+0.6
3,292,240	+				+1.0
3,292,240	+				+0.6
3,292,240	+				+0.3
3,292,240	+				-0.4
3,292,240	+				-0.9
3,292,240	+				+0.2
3,292,241	-				-0.9
3,292,241	-				-0.2
3,292,241	-				+0.6
3,292,241	-				+1.4
3,292,372	+		DZA65_RS15105	0.18	-1.1
3,292,547	+		DZA65_RS15105	0.33	-0.4