Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15005

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,274,585	-		DZA65_RS14995	0.85	-0.2
3,274,608	-		DZA65_RS14995	0.87	-0.8
3,274,634	+		DZA65_RS14995	0.89	-0.3
3,274,634	+		DZA65_RS14995	0.89	-0.2
3,274,635	-		DZA65_RS14995	0.89	+0.0
3,274,635	-		DZA65_RS14995	0.89	+0.9
3,274,687	-				+0.4
3,274,765	+				-0.0
3,274,866	-				-0.3
3,274,882	+				+0.8
3,274,882	+				+0.3
3,274,882	+				-0.1
3,274,883	-				+0.1
3,274,883	-				+1.6
3,274,898	+				+0.8
3,274,898	+				+0.0
3,274,898	+				+0.0
3,274,899	-				+0.9
3,274,899	-				+1.8
3,274,899	-				-0.7
3,274,899	-				-1.0
3,274,899	-				-0.8
3,274,914	+				+1.4
3,274,914	+				+0.8
3,274,914	+				-1.7
3,274,914	+				-0.8
3,274,914	+				-1.0
3,274,914	+				-1.0
3,274,914	+				-0.0
3,274,914	+				-0.4
3,274,915	-				+1.4
3,274,915	-				-0.3
3,274,915	-				-0.5
3,274,915	-				-1.4
3,274,915	-				-0.3
3,274,915	-				-0.6
3,274,915	-				-0.4
3,274,915	-				-0.6
3,274,915	-				-0.7
3,274,915	-				-0.4
3,274,963	-				+0.2
3,275,113	+		DZA65_RS15000	0.33	-0.9
3,275,113	+		DZA65_RS15000	0.33	-1.0
3,275,113	+		DZA65_RS15000	0.33	-0.3
3,275,113	+		DZA65_RS15000	0.33	-0.1
3,275,113	+		DZA65_RS15000	0.33	-0.1
3,275,113	+		DZA65_RS15000	0.33	-0.2
3,275,113	+		DZA65_RS15000	0.33	+0.5
3,275,113	+		DZA65_RS15000	0.33	-0.5
3,275,113	+		DZA65_RS15000	0.33	+0.5
3,275,113	+		DZA65_RS15000	0.33	-1.0
3,275,113	+		DZA65_RS15000	0.33	+0.2
3,275,114	-		DZA65_RS15000	0.33	-0.2
3,275,114	-		DZA65_RS15000	0.33	+1.3
3,275,114	-		DZA65_RS15000	0.33	+0.3
3,275,114	-		DZA65_RS15000	0.33	+0.0
3,275,114	-		DZA65_RS15000	0.33	-0.8
3,275,114	-		DZA65_RS15000	0.33	+0.8
3,275,114	-		DZA65_RS15000	0.33	-2.0
3,275,114	-		DZA65_RS15000	0.33	-2.0
3,275,114	-		DZA65_RS15000	0.33	+0.7
3,275,165	-		DZA65_RS15000	0.42	-0.4
3,275,165	-		DZA65_RS15000	0.42	-0.3
3,275,167	+		DZA65_RS15000	0.42	+0.2
3,275,167	+		DZA65_RS15000	0.42	-1.7
3,275,167	+		DZA65_RS15000	0.42	-1.9
3,275,167	+		DZA65_RS15000	0.42	-1.7
3,275,191	+		DZA65_RS15000	0.46	-0.8
3,275,191	+		DZA65_RS15000	0.46	-0.6
3,275,192	-		DZA65_RS15000	0.46	+0.7
3,275,249	+		DZA65_RS15000	0.56	-0.8
3,275,249	+				+0.6
3,275,249	+		DZA65_RS15000	0.56	-0.5
3,275,249	+		DZA65_RS15000	0.56	+0.2
3,275,286	+		DZA65_RS15000	0.62	-1.4
3,275,371	-		DZA65_RS15000	0.76	-0.6
3,275,443	+		DZA65_RS15000	0.88	+0.4
3,275,444	-		DZA65_RS15000	0.88	-0.2
3,275,460	+				+0.1
3,275,460	+				-1.0
3,275,461	-				-0.2
3,275,538	+				-0.6
3,275,538	+				-0.2
3,275,538	+				-1.1
3,275,538	+				-1.0
3,275,539	-				-0.1
3,275,539	-				+0.8
3,275,572	+				-0.6
3,275,572	+				+1.0
3,275,572	+				-0.2
3,275,572	+				-1.0
3,275,572	+				-1.2
3,275,572	+				+0.7
3,275,573	-				+0.9
3,275,573	-				-0.1
3,275,573	-				-0.8
3,275,573	-				+0.6
3,275,628	+				+0.1
3,275,691	+				-1.5
3,275,696	+				-0.6
3,275,696	+				+0.1
3,275,696	+				-2.5
3,275,696	+				-0.4
3,275,696	+				+0.4
3,275,697	-				-1.4
3,275,697	-				+2.0
3,275,724	-				+0.2
3,275,847	+		DZA65_RS15005	0.18	+1.8
3,275,874	+				-0.4
3,275,874	+		DZA65_RS15005	0.20	-0.7
3,275,874	+		DZA65_RS15005	0.20	-0.1
3,275,874	+		DZA65_RS15005	0.20	+0.7
3,275,875	-		DZA65_RS15005	0.20	+0.0
3,276,089	+		DZA65_RS15005	0.35	+0.4
3,276,096	-		DZA65_RS15005	0.35	-0.8
3,276,110	+		DZA65_RS15005	0.36	-0.3
3,276,110	+		DZA65_RS15005	0.36	+0.8
3,276,111	-		DZA65_RS15005	0.36	+0.7
3,276,111	-		DZA65_RS15005	0.36	-0.2
3,276,111	-		DZA65_RS15005	0.36	-0.4
3,276,165	-		DZA65_RS15005	0.40	-2.2
3,276,270	+		DZA65_RS15005	0.47	-0.7
3,276,271	-		DZA65_RS15005	0.47	+1.5
3,276,276	-		DZA65_RS15005	0.47	-0.7
3,276,342	+		DZA65_RS15005	0.52	+1.6
3,276,342	+		DZA65_RS15005	0.52	+0.6
3,276,463	+		DZA65_RS15005	0.60	-2.0
3,276,463	+		DZA65_RS15005	0.60	-1.0
3,276,463	+		DZA65_RS15005	0.60	-0.2
3,276,464	-		DZA65_RS15005	0.60	+0.4
3,276,477	+		DZA65_RS15005	0.61	-0.4
3,276,477	+		DZA65_RS15005	0.61	-0.2
3,276,478	-		DZA65_RS15005	0.61	+0.4
3,276,539	+		DZA65_RS15005	0.65	-1.2
3,276,539	+		DZA65_RS15005	0.65	+0.8
3,276,539	+		DZA65_RS15005	0.65	-2.2
3,276,539	+		DZA65_RS15005	0.65	-0.1
3,276,539	+		DZA65_RS15005	0.65	+1.2
3,276,576	-		DZA65_RS15005	0.68	+0.6
3,276,596	+		DZA65_RS15005	0.69	-0.2
3,276,596	+		DZA65_RS15005	0.69	-2.0
3,276,597	-		DZA65_RS15005	0.69	-0.2
3,276,657	+		DZA65_RS15005	0.73	-0.2
3,276,657	+		DZA65_RS15005	0.73	+0.6
3,276,657	+				+1.2
3,276,739	+		DZA65_RS15005	0.79	-0.1
3,276,833	+		DZA65_RS15005	0.85	+1.1
3,276,833	+		DZA65_RS15005	0.85	-0.2
3,276,833	+		DZA65_RS15005	0.85	+0.8
3,276,833	+		DZA65_RS15005	0.85	-1.7
3,276,833	+		DZA65_RS15005	0.85	-2.4
3,276,833	+				+1.2
3,276,833	+		DZA65_RS15005	0.85	-0.6
3,276,833	+		DZA65_RS15005	0.85	-0.1
3,276,833	+		DZA65_RS15005	0.85	-0.8
3,276,833	+		DZA65_RS15005	0.85	+0.9
3,276,833	+		DZA65_RS15005	0.85	+0.6
3,276,833	+		DZA65_RS15005	0.85	-1.0
3,276,833	+		DZA65_RS15005	0.85	-0.9
3,276,833	+		DZA65_RS15005	0.85	-1.6
3,276,833	+		DZA65_RS15005	0.85	-1.3
3,276,833	+		DZA65_RS15005	0.85	-1.7
3,276,833	+		DZA65_RS15005	0.85	-0.7
3,276,833	+		DZA65_RS15005	0.85	-1.5
3,276,833	+		DZA65_RS15005	0.85	-2.7
3,276,833	+		DZA65_RS15005	0.85	-0.5
3,276,834	-		DZA65_RS15005	0.85	-0.4
3,276,834	-		DZA65_RS15005	0.85	-0.1
3,276,834	-		DZA65_RS15005	0.85	+0.6
3,276,834	-		DZA65_RS15005	0.85	-2.0
3,276,834	-		DZA65_RS15005	0.85	+2.5
3,276,834	-		DZA65_RS15005	0.85	+0.9
3,276,834	-		DZA65_RS15005	0.85	-0.6
3,276,834	-		DZA65_RS15005	0.85	-0.2
3,276,834	-		DZA65_RS15005	0.85	+0.8
3,276,834	-		DZA65_RS15005	0.85	-1.2
3,276,834	-		DZA65_RS15005	0.85	-0.6
3,276,834	-		DZA65_RS15005	0.85	-0.4
3,276,834	-		DZA65_RS15005	0.85	+0.0
3,276,834	-		DZA65_RS15005	0.85	+2.3
3,276,834	-		DZA65_RS15005	0.85	-0.1
3,276,834	-		DZA65_RS15005	0.85	+0.4
3,276,835	+		DZA65_RS15005	0.85	-0.1
3,276,835	+		DZA65_RS15005	0.85	-1.4
3,276,835	+		DZA65_RS15005	0.85	+0.0
3,276,835	+		DZA65_RS15005	0.85	-2.1
3,276,835	+		DZA65_RS15005	0.85	+1.8
3,276,835	+		DZA65_RS15005	0.85	-0.8
3,276,835	+		DZA65_RS15005	0.85	+0.7
3,276,835	+		DZA65_RS15005	0.85	+0.8
3,276,835	+		DZA65_RS15005	0.85	+0.8
3,276,835	+		DZA65_RS15005	0.85	-2.2
3,276,835	+		DZA65_RS15005	0.85	-0.3
3,276,835	+		DZA65_RS15005	0.85	-0.1
3,276,835	+		DZA65_RS15005	0.85	+1.0
3,276,835	+		DZA65_RS15005	0.85	-0.1
3,276,835	+		DZA65_RS15005	0.85	-0.4
3,276,836	-		DZA65_RS15005	0.85	-0.4
3,276,836	-		DZA65_RS15005	0.85	+0.2
3,276,836	-		DZA65_RS15005	0.85	+1.6
3,276,836	-		DZA65_RS15005	0.85	+1.4
3,276,836	-		DZA65_RS15005	0.85	+0.2
3,276,836	-		DZA65_RS15005	0.85	+0.2
3,276,836	-		DZA65_RS15005	0.85	-1.0
3,276,836	-				+2.2
3,276,836	-		DZA65_RS15005	0.85	+1.4
3,276,836	-		DZA65_RS15005	0.85	+0.5
3,276,836	-		DZA65_RS15005	0.85	+1.0
3,276,836	-		DZA65_RS15005	0.85	-1.5
3,276,836	-		DZA65_RS15005	0.85	+1.2
3,276,935	+				-0.8
3,276,936	-				-0.5
3,277,055	-				+0.6
3,277,076	+				+0.8
3,277,181	-				-1.5
3,277,192	+				-2.8
3,277,192	+				+0.6
3,277,220	+		DZA65_RS15010	0.10	-0.5
3,277,231	+		DZA65_RS15010	0.12	-1.6
3,277,232	-		DZA65_RS15010	0.12	-2.2
3,277,234	-		DZA65_RS15010	0.12	+0.4
3,277,287	+		DZA65_RS15010	0.20	+1.1
3,277,287	+		DZA65_RS15010	0.20	-0.2
3,277,288	-		DZA65_RS15010	0.20	+3.3
3,277,288	-		DZA65_RS15010	0.20	-0.4
3,277,288	-		DZA65_RS15010	0.20	-2.4
3,277,312	+		DZA65_RS15010	0.23	-1.0
3,277,330	+		DZA65_RS15010	0.26	+0.9
3,277,360	-		DZA65_RS15010	0.30	+1.1
3,277,371	+		DZA65_RS15010	0.32	+0.0
3,277,384	+		DZA65_RS15010	0.34	+0.2
3,277,384	+		DZA65_RS15010	0.34	+1.2
3,277,384	+		DZA65_RS15010	0.34	+0.9
3,277,384	+		DZA65_RS15010	0.34	-1.5
3,277,384	+		DZA65_RS15010	0.34	-0.2
3,277,385	-		DZA65_RS15010	0.34	-2.3
3,277,386	+		DZA65_RS15010	0.34	+0.7
3,277,386	+		DZA65_RS15010	0.34	+1.6
3,277,386	+		DZA65_RS15010	0.34	+1.3
3,277,386	+		DZA65_RS15010	0.34	+0.1
3,277,386	+		DZA65_RS15010	0.34	+0.1
3,277,387	-		DZA65_RS15010	0.34	+1.3
3,277,387	-		DZA65_RS15010	0.34	-1.4
3,277,407	+		DZA65_RS15010	0.37	+2.0
3,277,407	+		DZA65_RS15010	0.37	+0.5
3,277,470	+		DZA65_RS15010	0.46	+0.6
3,277,475	+		DZA65_RS15010	0.47	+0.9
3,277,475	+		DZA65_RS15010	0.47	-0.6
3,277,501	+		DZA65_RS15010	0.50	+0.0
3,277,501	+		DZA65_RS15010	0.50	+0.6
3,277,501	+		DZA65_RS15010	0.50	-0.8
3,277,531	+		DZA65_RS15010	0.55	+0.9
3,277,531	+		DZA65_RS15010	0.55	-0.3
3,277,531	+		DZA65_RS15010	0.55	-0.8
3,277,531	+		DZA65_RS15010	0.55	+1.0
3,277,531	+		DZA65_RS15010	0.55	-0.5
3,277,552	+		DZA65_RS15010	0.58	-1.1
3,277,552	+		DZA65_RS15010	0.58	-0.6
3,277,552	+		DZA65_RS15010	0.58	-1.1
3,277,552	+		DZA65_RS15010	0.58	-0.4
3,277,553	-		DZA65_RS15010	0.58	-0.1
3,277,566	+		DZA65_RS15010	0.60	-0.4
3,277,566	+		DZA65_RS15010	0.60	-1.7
3,277,566	+		DZA65_RS15010	0.60	+2.2
3,277,566	+		DZA65_RS15010	0.60	-0.2
3,277,567	-		DZA65_RS15010	0.60	-1.6
3,277,567	-		DZA65_RS15010	0.60	+0.6
3,277,567	-		DZA65_RS15010	0.60	-0.7
3,277,567	-		DZA65_RS15010	0.60	+1.6
3,277,567	-				+1.2
3,277,567	-		DZA65_RS15010	0.60	-0.5
3,277,567	-		DZA65_RS15010	0.60	-2.4
3,277,567	-		DZA65_RS15010	0.60	-1.0
3,277,589	+		DZA65_RS15010	0.63	+0.4
3,277,590	-		DZA65_RS15010	0.63	-0.2
3,277,590	-		DZA65_RS15010	0.63	+0.6
3,277,590	-		DZA65_RS15010	0.63	+1.6
3,277,590	-		DZA65_RS15010	0.63	-0.3
3,277,638	-		DZA65_RS15010	0.70	-0.2
3,277,681	-		DZA65_RS15010	0.76	-0.6
3,277,681	-		DZA65_RS15010	0.76	-1.2
3,277,681	-		DZA65_RS15010	0.76	-0.3
3,277,688	-		DZA65_RS15010	0.77	-0.1
3,277,707	+		DZA65_RS15010	0.80	-1.9
3,277,708	-		DZA65_RS15010	0.80	+0.1
3,277,708	-		DZA65_RS15010	0.80	+1.4
3,277,714	+		DZA65_RS15010	0.81	-1.2
3,277,715	-		DZA65_RS15010	0.81	+1.2
3,277,726	+		DZA65_RS15010	0.82	-0.0
3,277,727	-		DZA65_RS15010	0.82	-2.2
3,277,727	-		DZA65_RS15010	0.82	-0.3
3,277,736	+		DZA65_RS15010	0.84	-0.8
3,277,780	-				+0.4
3,277,801	-				-0.7
3,277,805	+				-0.1
3,277,827	-				-1.0
3,277,856	+				+0.6
3,277,856	+				+0.6
3,277,877	+				-1.0
3,277,878	-				-1.1
3,277,888	+				-0.4
3,277,888	+				-0.8
3,277,888	+				-0.4
3,277,910	+				-1.2
3,277,918	+				-0.4
3,277,918	+				-1.3
3,277,918	+				-0.2
3,277,918	+				-1.4
3,277,918	+				-1.0
3,277,919	-				+0.4
3,277,934	-				-1.8
3,277,934	-				-0.8
3,277,943	+				+0.7
3,277,944	-				-0.2
3,277,944	-				-0.2
3,277,944	-				-0.6
3,277,944	-				-0.7
3,277,961	+				-0.5
3,277,966	+				+0.6
3,278,003	+				-0.4
3,278,003	+				+0.0
3,278,003	+				-0.5
3,278,003	+				+1.4
3,278,003	+				-0.7
3,278,004	-				+0.6
3,278,004	-				+1.0
3,278,004	-				+0.2
3,278,004	-				-0.3
3,278,005	+				-0.4
3,278,006	-				+0.1
3,278,017	+				+1.1
3,278,018	-				-1.3
3,278,020	+				-0.0
3,278,020	+				-2.2
3,278,020	+				+0.3
3,278,020	+				-0.3
3,278,020	+				-2.0
3,278,020	+				+0.4
3,278,020	+				+0.2
3,278,020	+				-0.3
3,278,021	-				-0.7
3,278,021	-				+0.8
3,278,021	-				-0.4
3,278,021	-				+0.5
3,278,021	-				+3.3
3,278,021	-				-0.6
3,278,026	+				-1.4
3,278,027	-				-0.6
3,278,027	-				+0.5
3,278,042	+		DZA65_RS15015	0.13	-0.5
3,278,043	-		DZA65_RS15015	0.13	-0.7