Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14890

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,243,368	+		DZA65_RS14880	0.31	-0.6
3,243,368	+		DZA65_RS14880	0.31	-1.1
3,243,369	-		DZA65_RS14880	0.32	+0.9
3,243,369	-		DZA65_RS14880	0.32	+0.3
3,243,484	+		DZA65_RS14880	0.52	+0.6
3,243,546	+		DZA65_RS14880	0.63	+2.2
3,243,547	-		DZA65_RS14880	0.63	-2.0
3,243,547	-		DZA65_RS14880	0.63	+0.6
3,243,600	+		DZA65_RS14880	0.72	-1.4
3,243,600	+		DZA65_RS14880	0.72	-0.9
3,243,601	-		DZA65_RS14880	0.72	-1.0
3,243,601	-		DZA65_RS14880	0.72	-1.7
3,243,601	-		DZA65_RS14880	0.72	+0.2
3,243,601	-		DZA65_RS14880	0.72	-0.6
3,243,697	+		DZA65_RS14880	0.89	-0.3
3,243,711	+				+0.3
3,243,711	+				+0.3
3,243,712	-				-1.0
3,243,712	-				+0.5
3,243,712	-				-1.1
3,243,756	+				+0.4
3,243,756	+				-0.3
3,243,756	+				-0.1
3,243,756	+				-1.1
3,243,756	+				-0.2
3,243,756	+				+0.6
3,243,756	+				+1.0
3,243,756	+				+1.8
3,243,756	+				+0.4
3,243,756	+				-0.1
3,243,756	+				-2.6
3,243,757	-				+0.6
3,243,757	-				-2.0
3,243,757	-				-2.6
3,243,757	-				-0.2
3,243,757	-				-0.4
3,243,757	-				-1.0
3,243,757	-				-2.4
3,243,757	-				+0.6
3,243,757	-				-0.7
3,243,757	-				+0.1
3,243,757	-				-0.8
3,243,757	-				+0.1
3,243,817	+		DZA65_RS14885	0.14	+0.2
3,243,818	-		DZA65_RS14885	0.14	-2.6
3,243,818	-		DZA65_RS14885	0.14	-2.2
3,243,818	-		DZA65_RS14885	0.14	-0.8
3,244,238	+				-0.2
3,244,238	+				-0.2
3,244,238	+				+0.6
3,244,238	+				-0.4
3,244,238	+				-0.7
3,244,238	+				-0.8
3,244,238	+				+1.6
3,244,238	+				+0.6
3,244,238	+				+0.8
3,244,239	-				-2.0
3,244,239	-				+0.9
3,244,239	-				-0.7
3,244,239	-				-0.1
3,244,239	-				+1.4
3,244,239	-				-1.1
3,244,239	-				+0.2
3,244,359	+				+2.9
3,244,360	-				-0.3
3,244,360	-				+0.3
3,244,413	+				-1.1
3,244,466	+		DZA65_RS14890	0.13	-0.2
3,244,466	+		DZA65_RS14890	0.13	-0.8
3,244,466	+		DZA65_RS14890	0.13	-0.7
3,244,466	+		DZA65_RS14890	0.13	-0.9
3,244,467	-		DZA65_RS14890	0.13	-1.7
3,244,467	-		DZA65_RS14890	0.13	-0.3
3,244,475	-		DZA65_RS14890	0.13	+0.1
3,244,475	-		DZA65_RS14890	0.13	-0.4
3,244,488	+		DZA65_RS14890	0.14	+1.0
3,244,651	+		DZA65_RS14890	0.24	+0.6
3,244,652	-		DZA65_RS14890	0.24	-0.2
3,244,669	-		DZA65_RS14890	0.25	-1.0
3,244,750	+		DZA65_RS14890	0.30	+0.6
3,244,779	+		DZA65_RS14890	0.31	+0.5
3,244,780	-		DZA65_RS14890	0.31	-0.7
3,244,780	-		DZA65_RS14890	0.31	-1.4
3,244,868	+		DZA65_RS14890	0.36	-0.8
3,244,868	+		DZA65_RS14890	0.36	+0.6
3,244,868	+		DZA65_RS14890	0.36	-0.4
3,244,869	-		DZA65_RS14890	0.36	+0.6
3,244,869	-		DZA65_RS14890	0.36	-0.5
3,244,869	-		DZA65_RS14890	0.36	-0.8
3,244,869	-		DZA65_RS14890	0.36	-0.8
3,244,869	-		DZA65_RS14890	0.36	-0.0
3,244,895	+		DZA65_RS14890	0.38	+0.0
3,244,895	+		DZA65_RS14890	0.38	-0.4
3,244,895	+		DZA65_RS14890	0.38	-1.1
3,244,895	+		DZA65_RS14890	0.38	+0.1
3,244,896	-				+1.8
3,244,896	-		DZA65_RS14890	0.38	-1.1
3,244,896	-		DZA65_RS14890	0.38	-0.1
3,244,947	-		DZA65_RS14890	0.41	-0.2
3,244,992	+		DZA65_RS14890	0.44	+0.9
3,244,992	+		DZA65_RS14890	0.44	-0.6
3,244,992	+		DZA65_RS14890	0.44	+0.6
3,244,992	+		DZA65_RS14890	0.44	-1.7
3,244,992	+		DZA65_RS14890	0.44	-0.3
3,244,992	+		DZA65_RS14890	0.44	+0.4
3,244,993	-		DZA65_RS14890	0.44	-0.6
3,244,993	-		DZA65_RS14890	0.44	-1.2
3,244,993	-		DZA65_RS14890	0.44	-2.4
3,244,993	-		DZA65_RS14890	0.44	-0.4
3,245,045	+		DZA65_RS14890	0.47	+0.4
3,245,046	-		DZA65_RS14890	0.47	+0.4
3,245,046	-		DZA65_RS14890	0.47	+0.8
3,245,109	-		DZA65_RS14890	0.51	-1.0
3,245,109	-		DZA65_RS14890	0.51	-1.2
3,245,109	-		DZA65_RS14890	0.51	+0.5
3,245,180	+		DZA65_RS14890	0.55	-1.3
3,245,180	+		DZA65_RS14890	0.55	+0.1
3,245,180	+		DZA65_RS14890	0.55	-0.4
3,245,180	+		DZA65_RS14890	0.55	+0.6
3,245,181	-		DZA65_RS14890	0.55	+1.4
3,245,181	-		DZA65_RS14890	0.55	-1.3
3,245,181	-		DZA65_RS14890	0.55	-0.4
3,245,181	-		DZA65_RS14890	0.55	+0.8
3,245,225	-		DZA65_RS14890	0.57	-0.6
3,245,228	+		DZA65_RS14890	0.58	+0.0
3,245,228	+		DZA65_RS14890	0.58	-0.0
3,245,228	+		DZA65_RS14890	0.58	-0.6
3,245,228	+		DZA65_RS14890	0.58	-0.0
3,245,228	+		DZA65_RS14890	0.58	-0.1
3,245,229	-		DZA65_RS14890	0.58	+0.1
3,245,229	-		DZA65_RS14890	0.58	-2.0
3,245,382	-		DZA65_RS14890	0.67	+0.6
3,245,627	+		DZA65_RS14890	0.81	-2.7
3,245,628	-		DZA65_RS14890	0.81	+0.3
3,245,684	+		DZA65_RS14890	0.84	-0.7
3,245,684	+				-1.0
3,245,684	+		DZA65_RS14890	0.84	+1.2
3,245,684	+		DZA65_RS14890	0.84	-0.7
3,245,684	+		DZA65_RS14890	0.84	+0.0
3,245,684	+		DZA65_RS14890	0.84	+0.0
3,245,685	-		DZA65_RS14890	0.84	+1.5
3,245,685	-		DZA65_RS14890	0.84	+0.4
3,245,752	+		DZA65_RS14890	0.88	+0.2
3,245,752	+		DZA65_RS14890	0.88	-0.7
3,245,753	-		DZA65_RS14890	0.88	+0.1
3,245,753	-		DZA65_RS14890	0.88	-1.1
3,245,761	-		DZA65_RS14890	0.89	-0.7
3,245,775	+		DZA65_RS14890	0.90	-1.7
3,245,775	+		DZA65_RS14890	0.90	+0.5
3,245,776	-		DZA65_RS14890	0.90	-1.1
3,245,776	-		DZA65_RS14890	0.90	-0.7
3,245,776	-		DZA65_RS14890	0.90	-2.2
3,245,844	+				-0.4
3,245,844	+				+0.2
3,245,844	+				-0.6
3,245,844	+				-2.0
3,245,844	+				-0.2
3,245,844	+				-2.0
3,245,844	+				+1.6
3,245,844	+				-1.7
3,245,844	+				+1.9
3,245,845	-				+0.2
3,245,845	-				-0.6
3,245,845	-				+0.1
3,245,845	-				-0.0
3,245,845	-				+0.2
3,245,957	+				+0.5
3,245,957	+				-0.8
3,245,958	-				+2.0
3,245,958	-				+0.3
3,245,958	-				-1.7
3,245,977	+				-1.1
3,245,977	+				-3.0
3,245,977	+				+0.3
3,245,977	+				+0.3
3,245,977	+				+1.0
3,245,977	+				-0.4
3,245,977	+				+0.0
3,245,978	-				-1.0
3,245,978	-				+2.2
3,245,978	-				-1.3
3,245,978	-				+0.2
3,245,978	-				-1.2
3,245,978	-				+0.4
3,245,978	-				-0.4
3,245,978	-				-0.1
3,245,978	-				-2.7
3,245,978	-				-0.4
3,246,030	+				-1.2
3,246,030	+				+0.6
3,246,031	-				+0.6
3,246,031	-				-1.6
3,246,031	-				-0.9
3,246,031	-				+0.6
3,246,031	-				+1.0
3,246,031	-				+0.6
3,246,031	-				-1.0
3,246,093	+		DZA65_RS14895	0.14	-0.8
3,246,093	+		DZA65_RS14895	0.14	+0.4
3,246,093	+		DZA65_RS14895	0.14	+1.2
3,246,094	-		DZA65_RS14895	0.14	+1.0
3,246,132	+		DZA65_RS14895	0.17	-1.3
3,246,133	-		DZA65_RS14895	0.17	-0.4
3,246,320	+		DZA65_RS14895	0.33	-0.2
3,246,320	+		DZA65_RS14895	0.33	+0.0
3,246,320	+		DZA65_RS14895	0.33	-1.4
3,246,320	+		DZA65_RS14895	0.33	-0.4
3,246,321	-		DZA65_RS14895	0.33	+0.0
3,246,321	-		DZA65_RS14895	0.33	-1.0
3,246,321	-		DZA65_RS14895	0.33	-0.7
3,246,321	-		DZA65_RS14895	0.33	-1.7
3,246,321	-		DZA65_RS14895	0.33	+0.2
3,246,321	-		DZA65_RS14895	0.33	-0.5
3,246,321	-		DZA65_RS14895	0.33	-1.0
3,246,321	-		DZA65_RS14895	0.33	-0.8
3,246,378	-		DZA65_RS14895	0.37	-0.4
3,246,510	+		DZA65_RS14895	0.48	+1.9
3,246,510	+		DZA65_RS14895	0.48	-0.4
3,246,510	+		DZA65_RS14895	0.48	-0.4
3,246,510	+		DZA65_RS14895	0.48	+0.7
3,246,510	+		DZA65_RS14895	0.48	+0.5
3,246,511	-		DZA65_RS14895	0.48	+1.2
3,246,535	+		DZA65_RS14895	0.50	+0.2
3,246,535	+		DZA65_RS14895	0.50	+0.9
3,246,535	+		DZA65_RS14895	0.50	-0.7
3,246,535	+		DZA65_RS14895	0.50	-1.0
3,246,535	+		DZA65_RS14895	0.50	+0.3
3,246,535	+		DZA65_RS14895	0.50	+0.3
3,246,535	+		DZA65_RS14895	0.50	-1.1
3,246,536	-		DZA65_RS14895	0.51	-0.7
3,246,536	-		DZA65_RS14895	0.51	+0.3
3,246,537	+		DZA65_RS14895	0.51	-0.4
3,246,537	+		DZA65_RS14895	0.51	-0.3
3,246,537	+		DZA65_RS14895	0.51	+0.1
3,246,705	+		DZA65_RS14895	0.65	+0.2
3,246,705	+		DZA65_RS14895	0.65	-0.4
3,246,705	+		DZA65_RS14895	0.65	+2.4
3,246,705	+		DZA65_RS14895	0.65	-0.7
3,246,705	+		DZA65_RS14895	0.65	+0.6
3,246,705	+		DZA65_RS14895	0.65	-1.7
3,246,705	+		DZA65_RS14895	0.65	+0.2
3,246,705	+		DZA65_RS14895	0.65	+0.6
3,246,705	+		DZA65_RS14895	0.65	+0.2
3,246,706	-		DZA65_RS14895	0.65	-1.1
3,246,706	-		DZA65_RS14895	0.65	+0.1
3,246,719	+		DZA65_RS14895	0.66	-0.2
3,246,768	+		DZA65_RS14895	0.70	+0.5
3,246,768	+		DZA65_RS14895	0.70	+1.2
3,246,768	+		DZA65_RS14895	0.70	-1.1
3,246,769	-		DZA65_RS14895	0.70	-1.1
3,246,769	-		DZA65_RS14895	0.70	+0.9
3,246,769	-		DZA65_RS14895	0.70	-0.7
3,246,769	-		DZA65_RS14895	0.70	+0.5
3,246,769	-		DZA65_RS14895	0.70	-0.9
3,246,774	+		DZA65_RS14895	0.70	-0.9
3,246,774	+		DZA65_RS14895	0.70	-0.4
3,246,877	-		DZA65_RS14895	0.79	+0.9
3,246,877	-		DZA65_RS14895	0.79	+0.2
3,246,877	-		DZA65_RS14895	0.79	-0.1
3,246,897	+		DZA65_RS14895	0.81	-0.8
3,246,897	+		DZA65_RS14895	0.81	-0.5
3,246,897	+		DZA65_RS14895	0.81	+0.3
3,246,897	+		DZA65_RS14895	0.81	+1.2
3,246,898	-		DZA65_RS14895	0.81	-0.2
3,246,898	-		DZA65_RS14895	0.81	-0.4
3,246,898	-		DZA65_RS14895	0.81	+1.9
3,246,898	-		DZA65_RS14895	0.81	-1.2