Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14830

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,230,306	+				-0.3
3,230,307	-				+0.3
3,230,326	+				-0.4
3,230,326	+				-0.7
3,230,393	-				-0.4
3,230,413	+				-1.9
3,230,413	+				-0.4
3,230,413	+				+0.4
3,230,413	+				-0.8
3,230,413	+				-0.6
3,230,413	+				-0.4
3,230,413	+				-1.0
3,230,413	+				-1.4
3,230,413	+				+1.1
3,230,413	+				-0.1
3,230,413	+				+1.3
3,230,413	+				-0.7
3,230,413	+				+0.0
3,230,414	-				-0.7
3,230,414	-				+1.2
3,230,414	-				-0.7
3,230,414	-				+1.9
3,230,414	-				+0.3
3,230,414	-				+0.6
3,230,414	-				-1.4
3,230,417	+				+1.0
3,230,417	+				-0.7
3,230,417	+				-0.6
3,230,418	-				+0.1
3,230,418	-				-0.1
3,230,418	-				+0.3
3,230,418	-				+1.4
3,230,426	-				+1.0
3,230,535	-		DZA65_RS14825	0.21	+1.4
3,230,563	+		DZA65_RS14825	0.25	+0.1
3,230,563	+		DZA65_RS14825	0.25	-0.1
3,230,563	+		DZA65_RS14825	0.25	+0.1
3,230,563	+		DZA65_RS14825	0.25	-0.4
3,230,564	-		DZA65_RS14825	0.25	+0.0
3,230,564	-		DZA65_RS14825	0.25	+0.2
3,230,564	-		DZA65_RS14825	0.25	+3.4
3,230,567	+		DZA65_RS14825	0.25	-1.6
3,230,567	+		DZA65_RS14825	0.25	-0.4
3,230,567	+		DZA65_RS14825	0.25	+1.1
3,230,567	+		DZA65_RS14825	0.25	-0.0
3,230,567	+		DZA65_RS14825	0.25	-0.7
3,230,567	+		DZA65_RS14825	0.25	+0.1
3,230,567	+		DZA65_RS14825	0.25	-0.6
3,230,567	+		DZA65_RS14825	0.25	-0.1
3,230,567	+				+0.3
3,230,567	+		DZA65_RS14825	0.25	-0.6
3,230,568	-		DZA65_RS14825	0.25	+0.6
3,230,568	-		DZA65_RS14825	0.25	-0.6
3,230,568	-		DZA65_RS14825	0.25	+3.4
3,230,568	-		DZA65_RS14825	0.25	+2.0
3,230,568	-		DZA65_RS14825	0.25	-1.4
3,230,568	-		DZA65_RS14825	0.25	+1.2
3,230,568	-		DZA65_RS14825	0.25	+0.6
3,230,568	-		DZA65_RS14825	0.25	+0.4
3,230,568	-		DZA65_RS14825	0.25	+0.5
3,230,568	-		DZA65_RS14825	0.25	-0.3
3,230,568	-		DZA65_RS14825	0.25	+0.1
3,230,568	-				-1.4
3,230,568	-		DZA65_RS14825	0.25	+1.0
3,230,568	-		DZA65_RS14825	0.25	-0.0
3,230,604	-		DZA65_RS14825	0.29	-0.6
3,230,771	+		DZA65_RS14825	0.48	+0.6
3,230,771	+		DZA65_RS14825	0.48	-0.7
3,230,771	+		DZA65_RS14825	0.48	+1.0
3,230,771	+		DZA65_RS14825	0.48	+1.4
3,230,772	-		DZA65_RS14825	0.48	-2.2
3,230,772	-		DZA65_RS14825	0.48	-0.2
3,230,772	-		DZA65_RS14825	0.48	-0.5
3,231,037	-		DZA65_RS14825	0.77	-1.4
3,231,222	+				-0.6
3,231,222	+				-0.1
3,231,222	+				-1.3
3,231,222	+				-1.0
3,231,223	-				-2.6
3,231,223	-				+0.1
3,231,223	-				+1.6
3,231,223	-				+1.6
3,231,223	-				-1.5
3,231,223	-				-0.4
3,231,223	-				+1.2
3,231,223	-				+0.0
3,231,243	+				-1.6
3,231,244	-				+1.2
3,231,293	+				+1.4
3,231,293	+				+0.2
3,231,293	+				-0.2
3,231,293	+				+0.7
3,231,293	+				-0.1
3,231,293	+				-1.2
3,231,294	-				+0.3
3,231,294	-				+0.9
3,231,339	+				+0.6
3,231,340	-				-0.4
3,231,348	+				-1.0
3,231,349	-				+0.2
3,231,424	-				+0.9
3,231,438	+				-1.7
3,231,468	+				+0.6
3,231,468	+				-0.9
3,231,468	+				-0.6
3,231,468	+				-0.2
3,231,468	+				-0.4
3,231,468	+				-0.7
3,231,468	+				+0.2
3,231,468	+				-0.5
3,231,468	+				-1.7
3,231,468	+				-0.6
3,231,468	+				-1.7
3,231,468	+				-0.6
3,231,468	+				+0.6
3,231,468	+				+0.6
3,231,468	+				+1.0
3,231,468	+				-1.1
3,231,468	+				-0.6
3,231,468	+				-0.8
3,231,469	-				+0.0
3,231,469	-				-0.8
3,231,469	-				+0.7
3,231,469	-				-0.1
3,231,469	-				+0.1
3,231,469	-				-0.4
3,231,469	-				+1.3
3,231,469	-				+0.2
3,231,469	-				+0.8
3,231,469	-				-1.4
3,231,469	-				-0.8
3,231,469	-				+0.0
3,231,469	-				-2.2
3,231,469	-				-1.2
3,231,469	-				-0.1
3,231,469	-				+0.1
3,231,469	-				+0.6
3,231,469	-				-0.1
3,231,469	-				+1.2
3,231,469	-				-1.5
3,231,469	-				+1.0
3,231,469	-				-1.6
3,231,470	+				+0.8
3,231,470	+				-0.7
3,231,470	+				-0.5
3,231,470	+				+0.8
3,231,470	+				-3.0
3,231,471	-				+0.3
3,231,471	-				+1.9
3,231,471	-				-2.7
3,231,471	-				+0.0
3,231,471	-				-0.7
3,231,623	+		DZA65_RS14830	0.12	-0.7
3,231,623	+		DZA65_RS14830	0.12	+0.3
3,231,623	+		DZA65_RS14830	0.12	-0.7
3,231,624	-		DZA65_RS14830	0.12	-0.2
3,231,624	-		DZA65_RS14830	0.12	-1.4
3,231,652	+		DZA65_RS14830	0.13	-0.4
3,231,663	+		DZA65_RS14830	0.13	-0.6
3,231,664	-		DZA65_RS14830	0.13	+0.2
3,231,664	-		DZA65_RS14830	0.13	+0.6
3,231,665	+		DZA65_RS14830	0.13	-0.6
3,231,665	+		DZA65_RS14830	0.13	-1.0
3,231,665	+		DZA65_RS14830	0.13	+1.2
3,231,665	+		DZA65_RS14830	0.13	+0.6
3,231,665	+		DZA65_RS14830	0.13	+1.3
3,231,665	+		DZA65_RS14830	0.13	-1.7
3,231,665	+		DZA65_RS14830	0.13	-2.0
3,231,666	-		DZA65_RS14830	0.13	-0.8
3,231,666	-		DZA65_RS14830	0.13	-1.5
3,231,666	-		DZA65_RS14830	0.13	+0.4
3,231,666	-				+1.0
3,231,666	-		DZA65_RS14830	0.13	-1.4
3,231,666	-		DZA65_RS14830	0.13	-1.1
3,231,666	-		DZA65_RS14830	0.13	-0.9
3,231,666	-		DZA65_RS14830	0.13	+0.7
3,231,666	-		DZA65_RS14830	0.13	+0.6
3,231,666	-		DZA65_RS14830	0.13	-0.6
3,231,687	+		DZA65_RS14830	0.14	-0.2
3,231,687	+		DZA65_RS14830	0.14	-1.0
3,231,688	-		DZA65_RS14830	0.14	+0.4
3,231,719	+		DZA65_RS14830	0.15	-2.0
3,231,719	+		DZA65_RS14830	0.15	-0.4
3,231,758	+		DZA65_RS14830	0.16	-0.8
3,231,759	-		DZA65_RS14830	0.16	+0.5
3,231,759	-		DZA65_RS14830	0.16	+0.0
3,231,759	-		DZA65_RS14830	0.16	-1.9
3,231,759	-		DZA65_RS14830	0.16	-0.6
3,232,185	+		DZA65_RS14830	0.30	-1.9
3,232,193	+		DZA65_RS14830	0.31	-1.2
3,232,193	+		DZA65_RS14830	0.31	-0.7
3,232,319	+		DZA65_RS14830	0.35	+0.4
3,232,319	+		DZA65_RS14830	0.35	-0.1
3,232,319	+		DZA65_RS14830	0.35	-1.7
3,232,320	-		DZA65_RS14830	0.35	+0.7
3,232,320	-				+0.6
3,232,320	-		DZA65_RS14830	0.35	-0.7
3,232,320	-		DZA65_RS14830	0.35	+0.6
3,232,577	+		DZA65_RS14830	0.43	+0.6
3,232,577	+				+0.0
3,232,578	-		DZA65_RS14830	0.43	+0.3
3,232,655	+		DZA65_RS14830	0.46	-0.7
3,232,655	+		DZA65_RS14830	0.46	-0.1
3,232,656	-		DZA65_RS14830	0.46	+0.8
3,232,656	-		DZA65_RS14830	0.46	+0.3
3,232,691	+		DZA65_RS14830	0.47	+1.8
3,232,691	+		DZA65_RS14830	0.47	+0.1
3,232,820	+		DZA65_RS14830	0.51	-0.9
3,232,821	-		DZA65_RS14830	0.51	-0.5
3,232,821	-		DZA65_RS14830	0.51	-1.0
3,232,856	-		DZA65_RS14830	0.52	+0.0
3,232,868	+		DZA65_RS14830	0.53	+0.2
3,232,868	+		DZA65_RS14830	0.53	-1.0
3,232,868	+		DZA65_RS14830	0.53	+0.4
3,232,868	+		DZA65_RS14830	0.53	-2.6
3,232,869	-		DZA65_RS14830	0.53	+2.2
3,232,869	-		DZA65_RS14830	0.53	+1.1
3,232,869	-		DZA65_RS14830	0.53	+1.0
3,232,869	-		DZA65_RS14830	0.53	+1.6
3,232,869	-				+0.9
3,232,869	-		DZA65_RS14830	0.53	-0.7
3,232,872	+		DZA65_RS14830	0.53	-0.4
3,232,872	+		DZA65_RS14830	0.53	-0.7
3,232,872	+		DZA65_RS14830	0.53	-1.4
3,232,872	+		DZA65_RS14830	0.53	-1.5
3,232,873	-		DZA65_RS14830	0.53	-0.4
3,232,873	-		DZA65_RS14830	0.53	-1.2
3,232,873	-		DZA65_RS14830	0.53	-2.9
3,232,873	-		DZA65_RS14830	0.53	+0.6
3,232,873	-		DZA65_RS14830	0.53	-0.1
3,232,873	-		DZA65_RS14830	0.53	-0.2
3,232,873	-		DZA65_RS14830	0.53	+0.8
3,232,873	-		DZA65_RS14830	0.53	+1.1
3,232,873	-		DZA65_RS14830	0.53	-1.7
3,232,873	-		DZA65_RS14830	0.53	+1.1
3,232,873	-		DZA65_RS14830	0.53	+2.3
3,232,873	-		DZA65_RS14830	0.53	-0.8
3,232,910	+		DZA65_RS14830	0.54	-0.6
3,232,910	+		DZA65_RS14830	0.54	+0.9
3,232,910	+		DZA65_RS14830	0.54	-0.7
3,232,910	+		DZA65_RS14830	0.54	-1.0
3,232,911	-		DZA65_RS14830	0.54	-1.5
3,232,911	-		DZA65_RS14830	0.54	-1.5
3,232,949	+		DZA65_RS14830	0.55	+1.6
3,232,949	+		DZA65_RS14830	0.55	-0.5
3,232,949	+		DZA65_RS14830	0.55	+0.0
3,232,950	-		DZA65_RS14830	0.55	-1.6
3,232,960	-		DZA65_RS14830	0.56	-0.7
3,232,960	-		DZA65_RS14830	0.56	-0.7
3,233,087	+		DZA65_RS14830	0.60	-1.0
3,233,087	+		DZA65_RS14830	0.60	+0.9
3,233,087	+		DZA65_RS14830	0.60	-0.4
3,233,087	+		DZA65_RS14830	0.60	-0.9
3,233,088	-		DZA65_RS14830	0.60	-1.3
3,233,088	-		DZA65_RS14830	0.60	-0.6
3,233,088	-				+0.6
3,233,094	+		DZA65_RS14830	0.60	+0.6
3,233,094	+		DZA65_RS14830	0.60	-0.2
3,233,094	+		DZA65_RS14830	0.60	-0.5
3,233,095	-		DZA65_RS14830	0.60	-1.1
3,233,095	-		DZA65_RS14830	0.60	+0.0
3,233,121	+		DZA65_RS14830	0.61	-0.7
3,233,121	+		DZA65_RS14830	0.61	+0.0
3,233,121	+		DZA65_RS14830	0.61	+0.8
3,233,121	+		DZA65_RS14830	0.61	+0.0
3,233,122	-		DZA65_RS14830	0.61	+0.8
3,233,122	-		DZA65_RS14830	0.61	-0.1
3,233,122	-		DZA65_RS14830	0.61	+0.4
3,233,292	-		DZA65_RS14830	0.67	-0.4
3,233,292	-		DZA65_RS14830	0.67	-0.4
3,233,304	+		DZA65_RS14830	0.67	+0.6
3,233,304	+		DZA65_RS14830	0.67	+0.1
3,233,312	+		DZA65_RS14830	0.67	-0.7
3,233,312	+		DZA65_RS14830	0.67	-1.2
3,233,313	-		DZA65_RS14830	0.67	-2.2
3,233,333	+		DZA65_RS14830	0.68	-1.1
3,233,334	-		DZA65_RS14830	0.68	-0.4
3,233,363	+		DZA65_RS14830	0.69	+0.3
3,233,364	-		DZA65_RS14830	0.69	+0.0
3,233,395	-		DZA65_RS14830	0.70	-0.2
3,233,395	-		DZA65_RS14830	0.70	-2.3
3,233,395	-		DZA65_RS14830	0.70	-0.1
3,233,396	+				+1.3
3,233,396	+		DZA65_RS14830	0.70	+0.4
3,233,396	+		DZA65_RS14830	0.70	-2.0
3,233,396	+		DZA65_RS14830	0.70	-0.7
3,233,397	-		DZA65_RS14830	0.70	+1.9
3,233,397	-				+2.2
3,233,397	-		DZA65_RS14830	0.70	+1.9
3,233,397	-		DZA65_RS14830	0.70	-0.5
3,233,397	-		DZA65_RS14830	0.70	-1.0
3,233,397	-		DZA65_RS14830	0.70	-1.1
3,233,397	-		DZA65_RS14830	0.70	+0.7
3,233,408	+		DZA65_RS14830	0.70	-0.7
3,233,408	+		DZA65_RS14830	0.70	+0.1
3,233,408	+		DZA65_RS14830	0.70	+2.4
3,233,408	+		DZA65_RS14830	0.70	-1.2
3,233,408	+		DZA65_RS14830	0.70	-0.6
3,233,408	+		DZA65_RS14830	0.70	-0.6
3,233,408	+		DZA65_RS14830	0.70	+0.4
3,233,409	-		DZA65_RS14830	0.70	+2.5
3,233,429	+		DZA65_RS14830	0.71	+0.6
3,233,429	+		DZA65_RS14830	0.71	-1.4
3,233,434	+		DZA65_RS14830	0.71	-0.3
3,233,435	-		DZA65_RS14830	0.71	+0.6
3,233,441	+		DZA65_RS14830	0.72	+0.4
3,233,441	+		DZA65_RS14830	0.72	-1.7
3,233,441	+		DZA65_RS14830	0.72	+0.0
3,233,441	+		DZA65_RS14830	0.72	-2.6
3,233,441	+		DZA65_RS14830	0.72	+0.5
3,233,442	-		DZA65_RS14830	0.72	+0.6
3,233,469	+		DZA65_RS14830	0.72	+2.5
3,233,469	+		DZA65_RS14830	0.72	+0.6
3,233,469	+		DZA65_RS14830	0.72	+0.6
3,233,470	-		DZA65_RS14830	0.72	+0.3
3,233,470	-		DZA65_RS14830	0.72	-0.9
3,233,495	+		DZA65_RS14830	0.73	+0.1
3,233,495	+				-1.0
3,233,495	+		DZA65_RS14830	0.73	-0.4
3,233,495	+		DZA65_RS14830	0.73	-0.8
3,233,495	+				-1.7
3,233,495	+		DZA65_RS14830	0.73	+0.0
3,233,496	-		DZA65_RS14830	0.73	+1.9
3,233,496	-		DZA65_RS14830	0.73	-0.4
3,233,496	-		DZA65_RS14830	0.73	-1.7
3,233,785	+		DZA65_RS14830	0.83	+0.6
3,233,973	-		DZA65_RS14830	0.89	-0.1
3,234,007	-				+0.9
3,234,007	-				-0.7
3,234,083	+				+0.6
3,234,083	+				+0.6
3,234,083	+				-0.4
3,234,083	+				+3.5
3,234,083	+				-1.1
3,234,083	+				-1.1
3,234,084	-				+1.2
3,234,125	+				+0.9
3,234,125	+				+0.6
3,234,126	-				-0.7
3,234,126	-				+1.2
3,234,126	-				-0.5
3,234,155	+				-1.7
3,234,155	+				-0.4
3,234,155	+				+0.6
3,234,156	-				-0.1
3,234,156	-				+0.0
3,234,165	+				-0.9
3,234,166	-				+0.9
3,234,166	-				+1.3
3,234,191	-				+0.0
3,234,195	+				+0.9
3,234,195	+				-2.0
3,234,195	+				-2.2
3,234,195	+				+0.0
3,234,196	-				-1.1
3,234,196	-				+0.4
3,234,196	-				-1.7
3,234,197	+				+3.5
3,234,197	+				-0.1
3,234,198	-				-2.6
3,234,277	+				+0.2
3,234,278	-				-0.8
3,234,278	-				+1.5
3,234,341	+				-0.4
3,234,341	+				+0.3
3,234,342	-				-0.7
3,234,342	-				-0.7
3,234,342	-				+0.3
3,234,342	-				-0.4
3,234,342	-				+1.2
3,234,342	-				-1.6
3,234,342	-				-0.5
3,234,342	-				-0.4
3,234,342	-				-1.0
3,234,352	+				+0.6
3,234,353	-				-2.4
3,234,410	-				-0.5
3,234,420	+				-1.0
3,234,420	+				+1.2
3,234,420	+				-0.7
3,234,420	+				+0.6
3,234,420	+				-0.4
3,234,420	+				+0.1
3,234,420	+				+0.0
3,234,420	+				+0.4
3,234,420	+				+1.7
3,234,420	+				+1.2
3,234,420	+				-1.0
3,234,420	+				+0.6
3,234,421	-				+1.0
3,234,421	-				+1.4
3,234,421	-				-1.9
3,234,421	-				-0.1
3,234,421	-				-0.6
3,234,421	-				-2.4
3,234,421	-				+1.2
3,234,421	-				-0.1
3,234,421	-				-0.1
3,234,421	-				-0.5
3,234,421	-				+0.6
3,234,421	-				-1.0
3,234,427	+				-2.2
3,234,428	-				-1.0
3,234,428	-				+0.3
3,234,428	-				+1.9
3,234,428	-				-0.6
3,234,428	-				+0.0
3,234,431	+				-1.7
3,234,431	+				+0.3
3,234,431	+				-0.8
3,234,431	+				+0.7
3,234,431	+				+0.9
3,234,432	-				+0.1
3,234,435	+				-1.5
3,234,435	+				-0.4
3,234,436	-				-0.6
3,234,436	-				-1.4
3,234,436	-				-0.4
3,234,446	+				+2.7
3,234,447	-				+0.1
3,234,452	+				-0.1
3,234,497	+				+0.2
3,234,497	+				+0.6
3,234,497	+				+1.3
3,234,497	+				-0.8
3,234,497	+				+0.1
3,234,497	+				-0.7
3,234,497	+				-0.1
3,234,497	+				+2.2
3,234,497	+				+0.4
3,234,498	-				-0.4
3,234,498	-				+0.6
3,234,504	+				+0.4
3,234,504	+				-0.4
3,234,505	-				+0.6
3,234,505	-				-2.2
3,234,505	-				-2.2
3,234,519	-				-1.0
3,234,532	+				+0.9
3,234,532	+				+0.6
3,234,533	-				+1.8
3,234,533	-				+0.3
3,234,569	+				-0.6
3,234,571	+				-1.0
3,234,571	+				-0.2
3,234,572	-				-0.4
3,234,593	+				+1.1
3,234,594	-				+0.6
3,234,604	+				+0.8
3,234,636	-				+1.2
3,234,664	-				+0.7
3,234,773	+				-0.1
3,234,842	+				+1.0
3,234,848	-				-0.4
3,234,859	+				+0.4
3,234,887	+				+0.1
3,234,939	-				-1.7
3,234,939	-				+0.6
3,234,975	-		DZA65_RS14835	0.34	-1.3
3,235,031	+		DZA65_RS14835	0.83	-0.8
3,235,031	+		DZA65_RS14835	0.83	+0.4
3,235,063	+				+1.2
3,235,063	+				-0.5
3,235,071	+				+0.9
3,235,071	+				+0.9
3,235,071	+				+0.8
3,235,071	+				-0.4
3,235,072	-				-0.5
3,235,072	-				-0.2
3,235,072	-				+1.3
3,235,072	-				-0.9