Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14745

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,205,437	+				-0.4
3,205,506	+				+0.6
3,205,506	+				+1.6
3,205,506	+				+0.2
3,205,506	+				-1.3
3,205,507	-				+0.0
3,205,507	-				+0.2
3,205,759	+		DZA65_RS14740	0.33	+0.9
3,205,759	+		DZA65_RS14740	0.33	-1.2
3,205,759	+		DZA65_RS14740	0.33	-0.1
3,205,759	+		DZA65_RS14740	0.33	-0.3
3,205,759	+		DZA65_RS14740	0.33	+0.6
3,205,759	+		DZA65_RS14740	0.33	-1.0
3,205,759	+		DZA65_RS14740	0.33	-0.1
3,205,760	-		DZA65_RS14740	0.33	+0.2
3,205,760	-		DZA65_RS14740	0.33	-1.9
3,205,760	-		DZA65_RS14740	0.33	+0.9
3,205,760	-		DZA65_RS14740	0.33	+0.2
3,205,760	-		DZA65_RS14740	0.33	+1.3
3,205,760	-		DZA65_RS14740	0.33	+0.7
3,205,760	-		DZA65_RS14740	0.33	+2.2
3,205,760	-		DZA65_RS14740	0.33	+0.6
3,205,839	-		DZA65_RS14740	0.42	-0.1
3,205,839	-		DZA65_RS14740	0.42	-2.7
3,205,953	+		DZA65_RS14740	0.56	-1.2
3,205,953	+		DZA65_RS14740	0.56	+0.9
3,205,953	+		DZA65_RS14740	0.56	+0.6
3,205,954	-		DZA65_RS14740	0.56	+0.0
3,205,954	-		DZA65_RS14740	0.56	-0.4
3,205,954	-		DZA65_RS14740	0.56	-0.5
3,205,957	+		DZA65_RS14740	0.56	+2.6
3,205,957	+		DZA65_RS14740	0.56	-0.1
3,205,957	+				+0.6
3,205,958	-		DZA65_RS14740	0.57	+0.0
3,206,006	+		DZA65_RS14740	0.62	-0.0
3,206,006	+		DZA65_RS14740	0.62	+0.6
3,206,049	+		DZA65_RS14740	0.68	-1.1
3,206,049	+		DZA65_RS14740	0.68	-0.1
3,206,049	+		DZA65_RS14740	0.68	-0.6
3,206,049	+		DZA65_RS14740	0.68	+1.6
3,206,049	+		DZA65_RS14740	0.68	-1.4
3,206,049	+		DZA65_RS14740	0.68	-2.7
3,206,050	-		DZA65_RS14740	0.68	-0.4
3,206,050	-		DZA65_RS14740	0.68	-0.4
3,206,050	-		DZA65_RS14740	0.68	-1.4
3,206,050	-		DZA65_RS14740	0.68	-1.4
3,206,050	-		DZA65_RS14740	0.68	-1.9
3,206,108	+		DZA65_RS14740	0.75	+0.3
3,206,109	-		DZA65_RS14740	0.75	-0.4
3,206,109	-		DZA65_RS14740	0.75	-0.7
3,206,128	-		DZA65_RS14740	0.77	+1.6
3,206,128	-		DZA65_RS14740	0.77	+0.6
3,206,128	-		DZA65_RS14740	0.77	-1.3
3,206,128	-		DZA65_RS14740	0.77	-1.0
3,206,138	+		DZA65_RS14740	0.78	-2.2
3,206,138	+		DZA65_RS14740	0.78	+1.3
3,206,138	+		DZA65_RS14740	0.78	-1.1
3,206,138	+		DZA65_RS14740	0.78	-0.0
3,206,139	-		DZA65_RS14740	0.78	-1.4
3,206,139	-		DZA65_RS14740	0.78	-0.7
3,206,141	+		DZA65_RS14740	0.79	+0.9
3,206,141	+		DZA65_RS14740	0.79	-1.5
3,206,142	-		DZA65_RS14740	0.79	-0.4
3,206,309	+				+0.2
3,206,309	+				-0.1
3,206,309	+				+0.0
3,206,310	-				-0.4
3,206,310	-				+1.0
3,206,310	-				-0.9
3,206,310	-				+0.1
3,206,310	-				-1.0
3,206,310	-				-2.6
3,206,380	+				-0.1
3,206,380	+				+0.9
3,206,380	+				-0.2
3,206,380	+				+3.0
3,206,380	+				+1.0
3,206,380	+				-0.1
3,206,380	+				-0.4
3,206,380	+				-0.1
3,206,380	+				-0.6
3,206,380	+				+0.3
3,206,380	+				-0.7
3,206,380	+				+1.2
3,206,380	+				+0.2
3,206,380	+				+1.2
3,206,381	-				-0.1
3,206,381	-				+0.0
3,206,381	-				-1.2
3,206,381	-				+1.3
3,206,381	-				+0.2
3,206,381	-				+1.2
3,206,381	-				-0.4
3,206,451	+				-0.2
3,206,665	+		DZA65_RS14745	0.12	-0.3
3,206,665	+		DZA65_RS14745	0.12	+1.4
3,206,665	+		DZA65_RS14745	0.12	-2.0
3,206,665	+		DZA65_RS14745	0.12	-0.4
3,206,665	+		DZA65_RS14745	0.12	-1.7
3,206,665	+		DZA65_RS14745	0.12	-1.4
3,206,665	+		DZA65_RS14745	0.12	+1.3
3,206,665	+		DZA65_RS14745	0.12	-1.6
3,206,665	+		DZA65_RS14745	0.12	+0.0
3,206,665	+		DZA65_RS14745	0.12	-0.4
3,206,666	-		DZA65_RS14745	0.12	-0.4
3,206,666	-		DZA65_RS14745	0.12	-0.1
3,206,666	-		DZA65_RS14745	0.12	+0.1
3,206,666	-		DZA65_RS14745	0.12	+0.2
3,206,666	-		DZA65_RS14745	0.12	+0.9
3,206,666	-		DZA65_RS14745	0.12	+1.9
3,206,666	-		DZA65_RS14745	0.12	-0.3
3,206,666	-		DZA65_RS14745	0.12	+0.5
3,206,666	-		DZA65_RS14745	0.12	-0.4
3,206,666	-		DZA65_RS14745	0.12	+1.0
3,206,666	-		DZA65_RS14745	0.12	+0.0
3,206,666	-		DZA65_RS14745	0.12	-0.8
3,206,666	-		DZA65_RS14745	0.12	+1.6
3,206,666	-		DZA65_RS14745	0.12	+0.6
3,206,666	-		DZA65_RS14745	0.12	-1.5
3,206,666	-		DZA65_RS14745	0.12	+0.2
3,206,666	-		DZA65_RS14745	0.12	-0.7
3,206,666	-		DZA65_RS14745	0.12	+0.8
3,206,666	-		DZA65_RS14745	0.12	+0.6
3,206,666	-		DZA65_RS14745	0.12	-1.0
3,206,666	-		DZA65_RS14745	0.12	-1.3
3,206,666	-		DZA65_RS14745	0.12	+0.4
3,206,666	-		DZA65_RS14745	0.12	-2.0
3,206,666	-		DZA65_RS14745	0.12	-0.8
3,206,666	-		DZA65_RS14745	0.12	+1.2
3,206,666	-		DZA65_RS14745	0.12	+0.1
3,206,666	-		DZA65_RS14745	0.12	+0.5
3,206,741	-		DZA65_RS14745	0.15	-0.6
3,206,741	-		DZA65_RS14745	0.15	-0.7
3,206,818	+		DZA65_RS14745	0.18	-0.6
3,206,854	+		DZA65_RS14745	0.19	+0.1
3,206,927	+		DZA65_RS14745	0.22	+1.3
3,207,176	-		DZA65_RS14745	0.31	-0.0
3,207,363	-		DZA65_RS14745	0.38	+0.2
3,207,364	+		DZA65_RS14745	0.38	-0.4
3,207,364	+		DZA65_RS14745	0.38	-1.7
3,207,364	+		DZA65_RS14745	0.38	-0.1
3,207,364	+		DZA65_RS14745	0.38	-0.1
3,207,364	+		DZA65_RS14745	0.38	+0.8
3,207,364	+				-1.4
3,207,365	-				+2.6
3,207,365	-		DZA65_RS14745	0.38	+0.6
3,207,365	-		DZA65_RS14745	0.38	+0.6
3,207,365	-		DZA65_RS14745	0.38	+0.6
3,207,365	-		DZA65_RS14745	0.38	+0.6
3,207,365	-		DZA65_RS14745	0.38	+0.0
3,207,365	-		DZA65_RS14745	0.38	-0.2
3,207,365	-		DZA65_RS14745	0.38	-1.5
3,207,647	+		DZA65_RS14745	0.49	-0.6
3,207,647	+		DZA65_RS14745	0.49	+0.7
3,207,647	+		DZA65_RS14745	0.49	+0.2
3,207,648	-		DZA65_RS14745	0.49	+0.2
3,207,824	+		DZA65_RS14745	0.56	+0.6
3,207,824	+		DZA65_RS14745	0.56	-0.4
3,207,824	+				-0.4
3,207,824	+				-1.4
3,207,827	+		DZA65_RS14745	0.56	+0.0
3,208,081	-		DZA65_RS14745	0.65	+0.1
3,208,103	+		DZA65_RS14745	0.66	+0.6
3,208,103	+		DZA65_RS14745	0.66	+0.6
3,208,104	-		DZA65_RS14745	0.66	+1.8
3,208,104	-		DZA65_RS14745	0.66	+0.0
3,208,471	+		DZA65_RS14745	0.80	+0.0
3,208,471	+		DZA65_RS14745	0.80	-0.4
3,208,471	+		DZA65_RS14745	0.80	-0.1
3,208,471	+		DZA65_RS14745	0.80	-1.4
3,208,472	-		DZA65_RS14745	0.80	+0.6
3,208,472	-		DZA65_RS14745	0.80	+1.0
3,208,472	-		DZA65_RS14745	0.80	-0.6
3,208,543	+		DZA65_RS14745	0.83	-0.8
3,208,543	+		DZA65_RS14745	0.83	+0.3
3,208,543	+		DZA65_RS14745	0.83	-0.1
3,208,543	+		DZA65_RS14745	0.83	+1.3
3,208,544	-		DZA65_RS14745	0.83	+0.6
3,208,547	+		DZA65_RS14745	0.83	-0.3
3,208,547	+		DZA65_RS14745	0.83	-0.7
3,208,548	-		DZA65_RS14745	0.83	+1.1
3,208,548	-		DZA65_RS14745	0.83	+0.4
3,208,583	-		DZA65_RS14745	0.84	+1.0
3,208,672	+		DZA65_RS14745	0.88	-0.6
3,208,672	+		DZA65_RS14745	0.88	-0.4
3,208,672	+		DZA65_RS14745	0.88	+0.1
3,208,672	+		DZA65_RS14745	0.88	+1.1
3,208,672	+		DZA65_RS14745	0.88	-0.8
3,208,672	+		DZA65_RS14745	0.88	+0.0
3,208,672	+		DZA65_RS14745	0.88	+1.1
3,208,672	+		DZA65_RS14745	0.88	-2.3
3,208,672	+		DZA65_RS14745	0.88	-0.1
3,208,672	+		DZA65_RS14745	0.88	-1.0
3,208,672	+		DZA65_RS14745	0.88	+0.0
3,208,672	+		DZA65_RS14745	0.88	+1.2
3,208,673	-		DZA65_RS14745	0.88	+0.6
3,208,673	-		DZA65_RS14745	0.88	-0.7
3,208,673	-		DZA65_RS14745	0.88	+0.7
3,208,673	-		DZA65_RS14745	0.88	-0.7
3,208,673	-		DZA65_RS14745	0.88	+0.2
3,208,673	-		DZA65_RS14745	0.88	-2.0
3,208,673	-		DZA65_RS14745	0.88	-0.7
3,208,675	+		DZA65_RS14745	0.88	+0.6
3,208,675	+		DZA65_RS14745	0.88	-0.3
3,208,675	+		DZA65_RS14745	0.88	+1.1
3,208,676	-		DZA65_RS14745	0.88	+1.6
3,208,676	-		DZA65_RS14745	0.88	-0.3
3,208,676	-		DZA65_RS14745	0.88	+0.0
3,208,676	-		DZA65_RS14745	0.88	+0.0
3,208,676	-		DZA65_RS14745	0.88	+0.6
3,208,676	-		DZA65_RS14745	0.88	+1.7
3,208,676	-		DZA65_RS14745	0.88	+0.4
3,208,676	-		DZA65_RS14745	0.88	-1.0
3,208,740	-				-1.1
3,208,740	-				+0.4
3,208,740	-				-0.3
3,208,740	-				+0.6
3,208,966	+				+0.2
3,208,994	+				-1.7
3,208,995	-				+0.0
3,208,995	-				-0.7
3,209,050	+				-0.4
3,209,050	+				-0.6
3,209,050	+				-0.2
3,209,050	+				+0.6
3,209,051	-				+0.0
3,209,051	-				-0.9
3,209,051	-				-1.0
3,209,051	-				+0.6
3,209,051	-				-0.7
3,209,060	+				-0.7
3,209,061	-				-0.3
3,209,061	-				-0.3
3,209,230	+				+0.6
3,209,553	+		DZA65_RS14750	0.13	-0.3
3,209,554	-		DZA65_RS14750	0.13	+1.9
3,209,554	-		DZA65_RS14750	0.13	+1.2
3,209,554	-		DZA65_RS14750	0.13	+1.8
3,209,554	-		DZA65_RS14750	0.13	+1.0
3,209,634	+		DZA65_RS14750	0.15	-0.5
3,209,703	+		DZA65_RS14750	0.17	-2.2
3,209,703	+		DZA65_RS14750	0.17	-0.3
3,209,703	+		DZA65_RS14750	0.17	-0.7
3,209,703	+		DZA65_RS14750	0.17	+0.7
3,209,703	+		DZA65_RS14750	0.17	+1.1
3,209,703	+		DZA65_RS14750	0.17	+0.3
3,209,703	+		DZA65_RS14750	0.17	-0.1
3,209,704	-		DZA65_RS14750	0.17	-1.4
3,209,704	-		DZA65_RS14750	0.17	-0.4
3,209,704	-		DZA65_RS14750	0.17	+0.6
3,209,704	-		DZA65_RS14750	0.17	+0.0
3,209,704	-		DZA65_RS14750	0.17	+0.1
3,209,704	-		DZA65_RS14750	0.17	+0.4
3,209,740	+				+0.2
3,209,808	+		DZA65_RS14750	0.19	-2.0
3,209,808	+		DZA65_RS14750	0.19	+0.2
3,209,808	+		DZA65_RS14750	0.19	+2.0
3,209,809	-		DZA65_RS14750	0.19	+1.3
3,209,809	-		DZA65_RS14750	0.19	-0.7
3,209,809	-		DZA65_RS14750	0.19	+0.6
3,209,809	-		DZA65_RS14750	0.19	-0.1
3,209,809	-		DZA65_RS14750	0.19	-0.3
3,209,809	-		DZA65_RS14750	0.19	+0.4
3,209,809	-		DZA65_RS14750	0.19	+0.2
3,209,809	-		DZA65_RS14750	0.19	-0.2
3,209,929	-		DZA65_RS14750	0.22	-2.4